Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Forward (+)

22845999 .. 22846331

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0244700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATTGTGTGGAGTCCTCCTCCTCTAAACTTTGTCAAATTAAACTTCAACAGTTCTAGAATACAAACTTCTGTTGCAGGTGGATTTGTTATTAGAGACTCTGCTGGAAAGCCACTGGTGGCAGCTGCTAAAGGCTTTGGATGTACCACTGTTCCGGTAGCTGAAGCATTAATGGCTTTGAGAAATGGTTTGATTGCAGCAAAGCAACATGGATTCACATATTTACAAGCTGAAGGAGATTCAAAACTGATTATTGATGCTGTGAAGGGCCGTATACACCCCCTTAGAGAATTTGCAAAGCTAATTCAAGACATTAGGCAGTTTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

110

Amino Acids

11.86

Weight (kDa)

10.01

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	23 - 108	1.6e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	2 cut(s)	183, 252
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	49, 243, 308
AluBI	AGCT	4 cut(s)	125, 161, 230, 301
AluI	AGCT	4 cut(s)	125, 161, 230, 301
Alw26I	GTCTC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	3 cut(s)	122, 125, 197
ApoI	RAATTY	1 cut(s)	290
AseI	ATTAAT	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	112, 134, 209
BceAI	ACGGC	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	123, 126, 198
BlsI	GCNGC	3 cut(s)	124, 127, 199
BmgT120I	GGNCC	1 cut(s)	268
BmsI	GCATC	1 cut(s)	247
BplI	GAGNNNNNCTC	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	2 cut(s)	9, 12
BseXI	GCAGC	3 cut(s)	112, 134, 209
BshFI	GGCC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	120
BssNAI	GTATAC	1 cut(s)	275
Bst1107I	GTATAC	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	53, 151
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	112, 134, 209
BstZ17I	GTATAC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	113, 147
BveI	ACCTGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	8 cut(s)	112, 125, 135, 161, 176, 230, 270, 301
CviKI_1	RGCY	8 cut(s)	112, 125, 135, 161, 176, 230, 270, 301
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	183, 252
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	210, 220, 275, 331
FatI	CATG	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	123, 126, 198
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	123, 126, 198
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	3 cut(s)	123, 126, 198
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	4 cut(s)	13, 98, 213, 239
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188III	TCNNGA	2 cut(s)	57, 308
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	227, 259
HpyCH4III	ACNGT	2 cut(s)	53, 151
HpyCH4V	TGCA	4 cut(s)	77, 197, 296, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	212
LpnPI	CCDG	4 cut(s)	63, 90, 101, 168
Lsp1109I	GCAGC	3 cut(s)	112, 134, 209
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	57
MluCI	AATT	3 cut(s)	38, 290, 303
MlyI	GAGTC	2 cut(s)	22, 92
MnlI	CCTC	3 cut(s)	27, 30, 33
MseI	TTAA	2 cut(s)	41, 170
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	213, 239
PkrI	GCNGC	3 cut(s)	124, 127, 199
PleI	GAGTC	2 cut(s)	21, 92
PpsI	GAGTC	2 cut(s)	21, 92
PshBI	ATTAAT	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	41, 170
SatI	GCNGC	3 cut(s)	123, 126, 198
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	22, 92
SetI	ASST	5 cut(s)	82, 127, 163, 232, 303
SfaNI	GCATC	1 cut(s)	247
SgeI	CNNG	8 cut(s)	69, 90, 117, 128, 167, 221, 239, 320
Sse9I	AATT	3 cut(s)	38, 290, 303
SspMI	CTAG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	53, 151
TasI	AATT	3 cut(s)	38, 290, 303
TfiI	GAWTC	2 cut(s)	213, 239
Tru1I	TTAA	2 cut(s)	41, 170
Tru9I	TTAA	2 cut(s)	41, 170
TscAI	CASTG	2 cut(s)	120, 154
TseI	GCWGC	3 cut(s)	122, 125, 197
TspRI	CASTG	2 cut(s)	120, 154
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	1 cut(s)	290
XbaI	TCTAGA	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.