Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Forward (+)

56428945 .. 56429232

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G033250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTACCACAGAATCTCCGACTGCTGCTAACAAAGTGGTTATTCATCTGAGAGCTACTGGTGATGCTCCTATACTGAAGCAAGCCAAATTTAAGATACCTGTAACGGACAAGTTTGCTAAAGTGATTGACTTTTTAAGGAGGCAACTTCACCGGGATACGTTGTTTGTGTATGTCAATAGTGCATTCTCACCAAACCCAGATGAATTGGTGATGGACCTGTATAATAATTTTGGTTTTGATGGTAAACTGGTAGTCAATTATGCTTGTTCTATGGCTTGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

95

Amino Acids

10.67

Weight (kDa)

8.82

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	12 - 95	5.6e-34	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	74, 143, 183, 223
AvaII	GGWCC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	2 cut(s)	208, 236
BciVI	GTATCC	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	64, 255
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	64, 255
BseXI	GCAGC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	64, 255
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	217
CviJI	RGCY	4 cut(s)	56, 86, 278, 285
CviKI_1	RGCY	4 cut(s)	56, 86, 278, 285
DdeI	CTNAG	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	98
FaiI	YATR	5 cut(s)	74, 174, 225, 264, 275
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	154
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	4 cut(s)	74, 143, 183, 223
Hpy166II	GTNNAC	2 cut(s)	6, 248
Hpy188I	TCNGA	2 cut(s)	21, 51
Hpy8I	GTNNAC	2 cut(s)	6, 248
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	45, 114, 167, 213, 233, 236
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	103
MluCI	AATT	4 cut(s)	89, 206, 229, 259
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	135
MseI	TTAA	2 cut(s)	93, 137
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	155
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	93, 137
SatI	GCNGC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	4 cut(s)	58, 103, 164, 222
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	4 cut(s)	89, 206, 229, 259
StyD4I	CCNGG	1 cut(s)	153
TaiI	ACGT	1 cut(s)	164
TasI	AATT	4 cut(s)	89, 206, 229, 259
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	93, 137
Tru9I	TTAA	2 cut(s)	93, 137
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	35, 219
TspGWI	ACGGA	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.