Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Reverse (-)

58552130 .. 58572651

Gene Structure 20522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTATCACGGAATCTCCGACTACTGCTAAGAAAGTGGTTATTCATCTTAGAGCTACTAGTGATGCCCCTGTATTGAAGCAAGCGAAATTCAAGATACCTGTAACAAACAAATTTGCTAAAGTAATTAATTTTTTAAAGAGGCAACTTCACCAGGATACGTTGTTTGTGTATGTCAACAGTGCATTCTCTCCAAACCCAAATAAATTGGTGATGAATCTGTATAATAATTTTGGTTTTGATGGTAGACTGACGGTCAATTATGCTTATACCATGGCATGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

95

Amino Acids

10.78

Weight (kDa)

10.06

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	12 - 95	3e-30	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	89, 113
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	79, 94
AhdI	GACNNNNNGTC	1 cut(s)	254
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	89, 113
AseI	ATTAAT	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	143, 223
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	155
BmeRI	GACNNNNNGTC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	182, 256
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	30, 50
BstDSI	CCRYGG	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	84
CviAII	CATG	2 cut(s)	274, 279
CviJI	RGCY	2 cut(s)	56, 285
CviKI_1	RGCY	2 cut(s)	56, 285
DdeI	CTNAG	2 cut(s)	30, 50
DraI	TTTAAA	1 cut(s)	138
DriI	GACNNNNNGTC	1 cut(s)	254
Eam1105I	GACNNNNNGTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	277, 282
FaiI	YATR	6 cut(s)	174, 225, 264, 270, 275, 280
FatI	CATG	2 cut(s)	273, 278
FblI	GTMKAC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	60
Hin1II	CATG	2 cut(s)	277, 282
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	14, 217
HphI	GGTGA	2 cut(s)	143, 223
Hpy166II	GTNNAC	2 cut(s)	178, 248
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	178, 248
HpyCH4III	ACNGT	2 cut(s)	182, 256
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	30, 50
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	277, 282
LpnPI	CCDG	4 cut(s)	84, 114, 140, 167
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	103
MluCI	AATT	7 cut(s)	89, 113, 126, 130, 206, 229, 259
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	135
MseI	TTAA	2 cut(s)	129, 137
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	273
NlaIII	CATG	2 cut(s)	277, 282
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	14, 217
PflMI	CCANNNNNTGG	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	129, 137
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	3 cut(s)	58, 103, 164
SfaNI	GCATC	1 cut(s)	55
SgeI	CNNG	8 cut(s)	22, 72, 83, 95, 106, 113, 166, 167
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	7 cut(s)	89, 113, 126, 130, 206, 229, 259
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	182, 256
TaiI	ACGT	1 cut(s)	164
TasI	AATT	7 cut(s)	89, 113, 126, 130, 206, 229, 259
TfiI	GAWTC	2 cut(s)	14, 217
Tru1I	TTAA	2 cut(s)	129, 137
Tru9I	TTAA	2 cut(s)	129, 137
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	35, 230
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	2 cut(s)	89, 113
XmiI	GTMKAC	1 cut(s)	247
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.