Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004991

Physical Location & Seq

Genomic Coordinates Reverse (-)

20666180 .. 20668817

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGAGGAGTGGTGCATCTTAGCACGGCGAAGTTAGCTAGAGGTTTCTTAGTGTGTTTATGTCTTTGGGGTTTTTTCTCGCTATCATACGCCGCAAGGTCCGGCGTATCAAAGCAGAAGTTTGAAGTGAAGAAACATTTGAACAGGCTGAACAAACCTGCTGTCAAAAGCATTCAGAGTTCAGATGGTGATGTGATTGACTGTGTTCCAATCTCAAAGCAACCAGCTTTTGATCATCCGTTCCTCAAAGATCACAAGATTCAGATGAAGCCTAATTACCACCCTGAAGGACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAGAAGGGCATATTCCTCAGTTGTGGCATCGATATGGTAAATGTTCTGAAGGAACTATTCCCATGAGGAGGACAAAGGAAGATGATGTTTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCGTAGAAGTGTCCCTTTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGCATGCCATAGCTTATGTAGAAGGAGATAAGTACTATGGAGCTAAGGCTACTATAAATGTGTGGGAGCCAAAGATACAGCAGCAGAATGAGTTCAGCTTGTCACAGATATGGCTTCTTGGTGGCTCATTCGGACAAGATCTTAATAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCTGTATGGTGACAATAACACGAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTACCGGTTGCTACAATCTTCTTTGCTCCGGTTTTATTCAAATCAACAGTGACATAGCAATGGGAGCAAGCATTTCCCCGGTCTCTGGATATCGTAACTCGCAGTACGATATCAGTATTCTGATCTGGAAGGATCCTAAAGAGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTAGGCTATTGGCCATCTTTTCTCTTCTCCTACTTGACAGAAAGTGCATCGATGATTGAATGGGGAGGAGAAGTCGTGAACTCACAATCAGATGGCCAGCACACTTCAACACAAATGGGCAGTGGTAAATTTCCAGAAGAAGGCTTTAGCAAAGCAAGTTACTTCAGGAACATTCAGGTGGTTGATGGGTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGAACAGTCTAACTGTTATGATGTTCAAACCGGAAGCAATGATGATTGGGGTCATTACTTTTACTATGGAGGCCCTGGTAAAAACCAGAAGTGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

422

Amino Acids

47.31

Weight (kDa)

8.43

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	57 - 180	1.2e-46	Neprosin activation peptide
Neprosin	PF03080	203 - 415	2.8e-86	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55360 AT3G13510 AT5G56530 AT5G56530
fragaria_vesca	FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750
malus_domestica	MD03G1003500.v1.1 MD11G1003400.v1.1
prunus_persica	Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1
pyrus_communis	pycom03g00350 pycom11g00300
rosa_chinensis	RchiOBHm_Chr5g0083821
rosa_laevigata	RLG00000037054
rosa_multiflora	Rmu_sc0024007.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000770
rosa_rugosa	Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300
rosa_samantha	Rh5AG539300 Rh5CG586500 Rh5DG573000
rosa_wichuraiana	Rw5G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	2 cut(s)	166, 679
AccB1I	GGYRCC	1 cut(s)	1144
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	3 cut(s)	708, 887, 900
AcoI	YGGCCR	2 cut(s)	950, 1033
AcsI	RAATTY	1 cut(s)	1067
AcuI	CTGAAG	3 cut(s)	306, 402, 1087
AfaI	GTAC	2 cut(s)	557, 866
AfiI	CCNNNNNNNGG	4 cut(s)	402, 845, 902, 1079
AgeI	ACCGGT	1 cut(s)	764
AgsI	TTSAA	6 cut(s)	125, 142, 800, 998, 1047, 1196
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	1 cut(s)	1243
AluBI	AGCT	7 cut(s)	38, 227, 536, 566, 621, 680, 761
AluI	AGCT	7 cut(s)	38, 227, 536, 566, 621, 680, 761
Alw26I	GTCTC	2 cut(s)	718, 847
AlwI	GGATC	3 cut(s)	708, 887, 900
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	3 cut(s)	950, 1033, 1240
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	1067
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AsiGI	ACCGGT	1 cut(s)	764
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	99, 1241
AsuC2I	CCSGG	2 cut(s)	698, 839
AsuHPI	GGTGA	4 cut(s)	200, 512, 703, 722
AvaII	GGWCC	1 cut(s)	99
BalI	TGGCCA	2 cut(s)	952, 1035
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	1144
BanII	GRGCYC	1 cut(s)	698
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BauI	CACGAG	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	4 cut(s)	179, 961, 1025, 1118
BceAI	ACGGC	2 cut(s)	42, 946
BciT130I	CCWGG	1 cut(s)	1245
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	698, 839
BcoDI	GTCTC	2 cut(s)	718, 847
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	2 cut(s)	39, 744
BfmI	CTRYAG	1 cut(s)	489
BfuAI	ACCTGC	2 cut(s)	166, 679
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	2 cut(s)	93, 605
BlsI	GCNGC	2 cut(s)	94, 606
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	3 cut(s)	698, 839, 1245
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	99, 1241
BmiI	GGNNCC	3 cut(s)	591, 894, 1146
BmrFI	CCNGG	3 cut(s)	698, 839, 1245
BmsI	GCATC	6 cut(s)	25, 370, 681, 739, 906, 995
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	1124
BpuMI	CCSGG	2 cut(s)	698, 839
Bsa29I	ATCGAT	2 cut(s)	364, 989
BsaBI	GATNNNNATC	1 cut(s)	753
BsaI	GGTCTC	1 cut(s)	847
BsaJI	CCNNGG	2 cut(s)	837, 1243
BsaWI	WCCGGW	3 cut(s)	764, 788, 1199
BsaXI	ACNNNNNCTCC	5 cut(s)	27, 996, 999, 1026, 1029
Bsc4I	CCNNNNNNNGG	4 cut(s)	402, 845, 902, 1079
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	743, 914
Bse3DI	GCAATG	2 cut(s)	825, 1213
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	1245
BseCI	ATCGAT	2 cut(s)	364, 989
BseDI	CCNNGG	2 cut(s)	837, 1243
BseGI	GGATG	2 cut(s)	235, 921
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	4 cut(s)	402, 845, 902, 1079
BseMI	GCAATG	2 cut(s)	825, 1213
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	743, 914
BseRI	GAGGAG	3 cut(s)	21, 415, 1020
BseXI	GCAGC	1 cut(s)	616
BshFI	GGCC	3 cut(s)	952, 1035, 1242
BshNI	GGYRCC	1 cut(s)	1144
BshTI	ACCGGT	1 cut(s)	764
BshVI	ATCGAT	2 cut(s)	364, 989
BsiSI	CCGG	6 cut(s)	102, 698, 765, 789, 839, 1200
BslFI	GGGAC	2 cut(s)	458, 918
BslI	CCNNNNNNNGG	4 cut(s)	402, 845, 902, 1079
BsmAI	GTCTC	2 cut(s)	718, 847
BsmFI	GGGAC	2 cut(s)	458, 918
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	3 cut(s)	952, 1035, 1242
Bso31I	GGTCTC	1 cut(s)	847
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp143I	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	3 cut(s)	952, 1035, 1242
BspCNI	CTCAG	1 cut(s)	364
BspDI	ATCGAT	2 cut(s)	364, 989
BspLI	GGNNCC	3 cut(s)	591, 894, 1146
BspMAI	CTGCAG	1 cut(s)	493
BspMI	ACCTGC	2 cut(s)	166, 679
BspPI	GGATC	3 cut(s)	708, 887, 900
BspT107I	GGYRCC	1 cut(s)	1144
BspTNI	GGTCTC	1 cut(s)	847
BsrDI	GCAATG	2 cut(s)	825, 1213
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	743, 914
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	2 cut(s)	837, 1243
BssMI	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
BssSI	CACGAG	1 cut(s)	721
Bst2BI	CACGAG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	1245
Bst4CI	ACNGT	4 cut(s)	203, 809, 1176, 1184
Bst6I	CTCTTC	2 cut(s)	734, 968
BstC8I	GCNNGC	3 cut(s)	528, 829, 1037
BstDEI	CTNAG	4 cut(s)	20, 49, 351, 567
BstEII	GGTNACC	1 cut(s)	518
BstF5I	GGATG	2 cut(s)	235, 921
BstKTI	GATC	6 cut(s)	235, 253, 664, 703, 885, 895
BstMAI	GTCTC	2 cut(s)	718, 847
BstMBI	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 758, 824
BstNI	CCWGG	1 cut(s)	1245
BstNSI	RCATGY	1 cut(s)	530
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	3 cut(s)	696, 837, 1243
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	616
BstX2I	RGATCY	3 cut(s)	661, 700, 892
BstYI	RGATCY	3 cut(s)	661, 700, 892
Bsu15I	ATCGAT	2 cut(s)	364, 989
BsuRI	GGCC	3 cut(s)	952, 1035, 1242
BsuTUI	ATCGAT	2 cut(s)	364, 989
BtsCI	GGATG	2 cut(s)	235, 921
BtsI	GCAGTG	1 cut(s)	1066
BtsIMutI	CAGTG	4 cut(s)	814, 907, 1066, 1167
BveI	ACCTGC	2 cut(s)	166, 679
Cac8I	GCNNGC	3 cut(s)	528, 829, 1037
CaiI	CAGNNNCTG	1 cut(s)	497
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	2 cut(s)	99, 1241
ClaI	ATCGAT	2 cut(s)	364, 989
Csp6I	GTAC	2 cut(s)	556, 865
CspAI	ACCGGT	1 cut(s)	764
CviAII	CATG	2 cut(s)	397, 527
CviQI	GTAC	2 cut(s)	556, 865
DdeI	CTNAG	4 cut(s)	20, 49, 351, 567
DpnI	GATC	6 cut(s)	234, 252, 663, 702, 884, 894
DpnII	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
EaeI	YGGCCR	2 cut(s)	950, 1033
Eam1104I	CTCTTC	2 cut(s)	734, 968
EarI	CTCTTC	2 cut(s)	734, 968
Eco24I	GRGCYC	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	847
Eco32I	GATATC	2 cut(s)	851, 871
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	3 cut(s)	306, 402, 1087
Eco91I	GGTNACC	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	1241
EcoO65I	GGTNACC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	1243
EcoRV	GATATC	2 cut(s)	851, 871
EcoT22I	ATGCAT	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	698
FaeI	CATG	2 cut(s)	400, 530
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	2 cut(s)	458, 918
FatI	CATG	2 cut(s)	396, 526
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	93, 605
FokI	GGATG	2 cut(s)	222, 928
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	93, 605
FspBI	CTAG	2 cut(s)	39, 744
GluI	GCNGC	2 cut(s)	93, 605
HaeIII	GGCC	3 cut(s)	952, 1035, 1242
HapII	CCGG	6 cut(s)	102, 698, 765, 789, 839, 1200
Hin1II	CATG	2 cut(s)	400, 530
HinfI	GANTC	3 cut(s)	259, 291, 726
HpaII	CCGG	6 cut(s)	102, 698, 765, 789, 839, 1200
HphI	GGTGA	4 cut(s)	200, 512, 703, 722
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	7 cut(s)	177, 184, 264, 382, 656, 882, 1030
Hpy188III	TCNNGA	5 cut(s)	846, 886, 1015, 1073, 1105
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	6 cut(s)	281, 332, 377, 539, 883, 1073
HpyCH4III	ACNGT	4 cut(s)	203, 809, 1176, 1184
HpyCH4V	TGCA	5 cut(s)	16, 491, 752, 919, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 758, 824
HpyF3I	CTNAG	4 cut(s)	20, 49, 351, 567
Hsp92II	CATG	2 cut(s)	400, 530
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
LmnI	GCTCC	5 cut(s)	322, 563, 589, 791, 824
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	6 cut(s)	25, 370, 681, 739, 906, 995
MaeI	CTAG	2 cut(s)	39, 744
MaeIII	GTNAC	6 cut(s)	518, 624, 710, 809, 854, 1097
MalI	GATC	6 cut(s)	234, 252, 663, 702, 884, 894
MboI	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
MboII	GAAGA	7 cut(s)	142, 425, 469, 721, 770, 955, 1088
MflI	RGATCY	3 cut(s)	661, 700, 892
MhlI	GDGCHC	1 cut(s)	698
MlsI	TGGCCA	2 cut(s)	952, 1035
MluCI	AATT	3 cut(s)	274, 920, 1067
MluNI	TGGCCA	2 cut(s)	952, 1035
MlyI	GAGTC	2 cut(s)	285, 720
MnlI	CCTC	9 cut(s)	35, 254, 360, 393, 396, 895, 998, 1148, 1232
Mox20I	TGGCCA	2 cut(s)	952, 1035
Mph1103I	ATGCAT	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	614
MscI	TGGCCA	2 cut(s)	952, 1035
MseI	TTAA	3 cut(s)	441, 507, 666
MslI	CAYNNNNRTG	5 cut(s)	366, 525, 631, 818, 1115
Msp20I	TGGCCA	2 cut(s)	952, 1035
MspI	CCGG	6 cut(s)	102, 698, 765, 789, 839, 1200
MspR9I	CCNGG	3 cut(s)	698, 839, 1245
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	1245
MwoI	GCNNNNNNNGC	3 cut(s)	35, 758, 824
NciI	CCSGG	2 cut(s)	698, 839
NdeII	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
NlaIII	CATG	2 cut(s)	400, 530
NlaIV	GGNNCC	3 cut(s)	591, 894, 1146
NmuCI	GTSAC	4 cut(s)	518, 624, 710, 809
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	530
PaeI	GCATGC	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	679
PctI	GAATGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	764
PkrI	GCNGC	2 cut(s)	94, 606
PleI	GAGTC	2 cut(s)	285, 720
PpsI	GAGTC	2 cut(s)	285, 720
Psp6I	CCWGG	1 cut(s)	1243
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	1243
PspN4I	GGNNCC	3 cut(s)	591, 894, 1146
PspPI	GGNCC	2 cut(s)	99, 1241
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	3 cut(s)	661, 700, 892
RsaI	GTAC	2 cut(s)	557, 866
RsaNI	GTAC	2 cut(s)	556, 865
RseI	CAYNNNNRTG	5 cut(s)	366, 525, 631, 818, 1115
SaqAI	TTAA	3 cut(s)	441, 507, 666
SatI	GCNGC	2 cut(s)	93, 605
Sau3AI	GATC	6 cut(s)	232, 250, 661, 700, 882, 892
Sau96I	GGNCC	2 cut(s)	99, 1241
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	2 cut(s)	285, 720
ScrFI	CCNGG	3 cut(s)	698, 839, 1245
SduI	GDGCHC	1 cut(s)	698
SfaNI	GCATC	6 cut(s)	25, 370, 681, 739, 906, 995
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	5 cut(s)	366, 525, 631, 818, 1115
SmlI	CTYRAG	1 cut(s)	1139
SmoI	CTYRAG	1 cut(s)	1139
SpeI	ACTAGT	1 cut(s)	743
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	3 cut(s)	274, 920, 1067
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	2 cut(s)	39, 744
StyD4I	CCNGG	3 cut(s)	696, 837, 1243
TaaI	ACNGT	4 cut(s)	203, 809, 1176, 1184
TaqI	TCGA	3 cut(s)	364, 675, 989
TasI	AATT	3 cut(s)	274, 920, 1067
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	3 cut(s)	441, 507, 666
Tru9I	TTAA	3 cut(s)	441, 507, 666
TscAI	CASTG	4 cut(s)	814, 914, 1066, 1174
TseFI	GTSAC	4 cut(s)	518, 624, 710, 809
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	4 cut(s)	518, 624, 710, 809
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	4 cut(s)	814, 914, 1066, 1174
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	1 cut(s)	1067
XceI	RCATGY	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	2 cut(s)	39, 744
ZrmI	AGTACT	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.