Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004991

Physical Location & Seq

Genomic Coordinates Forward (+)

4403355 .. 4406091

Gene Structure 2737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGAGCTGAGCATTTTAGCCTGGTGAAGTTCAATAGAGGTTTCTTTGTGTGTTTATGGGTGATGCTCTCGCTATCTTGCGCAGCAGCGAGCTATGGCTCTTCAAGGCAAAAGTTTGAGGTGAAGAAGCATTTGAATAGGCTCAACAAACCTCCTGTTAAGACTATTCAGAGTCCAGATGGAGATATAATCGACTGTATTCCTATTTCAAAGCAGCCAGCTTTTGACCACCCCTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACCACCCAGAAGGGCTCTTTGATGACAATAAGGTATCTGCTGAACCAAAGGGGAAAGAAACTCATATCCCTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACCATTCCCATGAGGAGGACAAGGGAGGATGATGTGTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCATAGGTCTGTTCCTATTCCTAAATCTGCGGAACCCGACCTCATCAACCAAAATGGTCATCAACACGCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACTTTGAATGTGTGGGAGCCAAAGATACAGAACACAAACGAATTCAGCTTGTCGCAGATATGGCTTTTGGGGGGTTCCTTTGGACAAGATCTTAACAGTATTGAAGCTGGCTGGCAGGTGAGTCCGGATCTATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTACCGGTTGCTACAATCTTCTTTGCTCAGGTTTCATTCAAATCAACAGTGACATAGCAATGGGAGCAAGCATCTCACCAGTCTCTGGATACCGCAATTCCCAGTATGATATCAGTATTCTAATCTGGAAGGATCCAAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGGGGTACTGGCCATCATTTCTGTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGGGAGGAGAAGTTGTGAACTCACAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTGGTCACTTTCCAGAAGAAGGTTTCAGTAAAGCAAGTTACTTTCGGAACATTCAAGTCGTAGATGGATCCAACAACCTCAAAGCACCAAAAGGACTTGGTACATTCACCGAGAAGTCCAACTGTTATGATGTTCAAACGGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGTGGTCCCGGTAAGAACAAGAACTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

419

Amino Acids

47.35

Weight (kDa)

7.63

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	55 - 177	5.2e-47	Neprosin activation peptide
Neprosin	PF03080	201 - 412	2.1e-86	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55360 AT3G13510 AT5G56530 AT5G56530
fragaria_vesca	FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750
malus_domestica	MD03G1003500.v1.1 MD11G1003400.v1.1
prunus_persica	Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1
pyrus_communis	pycom03g00350 pycom11g00300
rosa_chinensis	RchiOBHm_Chr5g0083821
rosa_laevigata	RLG00000037054
rosa_multiflora	Rmu_sc0024007.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000770
rosa_rugosa	Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300
rosa_samantha	Rh5AG539300 Rh5CG586500 Rh5DG573000
rosa_wichuraiana	Rw5G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc16I	TGCGCA	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	351
AccB7I	CCANNNNNTGG	1 cut(s)	836
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	2 cut(s)	482, 844
AclWI	GGATC	5 cut(s)	699, 878, 891, 1113, 1126
AcoI	YGGCCR	1 cut(s)	941
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	4 cut(s)	370, 548, 938, 1153
AfiI	CCNNNNNNNGG	4 cut(s)	393, 836, 893, 1070
AgeI	ACCGGT	2 cut(s)	354, 755
AgsI	TTSAA	9 cut(s)	34, 105, 136, 210, 571, 668, 791, 1106, 1187
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	8 cut(s)	8, 93, 221, 527, 557, 612, 671, 752
AluI	AGCT	8 cut(s)	8, 93, 221, 527, 557, 612, 671, 752
Alw26I	GTCTC	2 cut(s)	696, 838
AlwI	GGATC	5 cut(s)	699, 878, 891, 1113, 1126
AlwNI	CAGNNNCTG	1 cut(s)	836
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	3 cut(s)	263, 941, 1024
ApeKI	GCWGC	3 cut(s)	83, 86, 214
ApoI	RAATTY	1 cut(s)	605
AsiGI	ACCGGT	2 cut(s)	354, 755
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	1232
AsuC2I	CCSGG	1 cut(s)	1236
AsuHPI	GGTGA	6 cut(s)	37, 73, 133, 694, 819, 1150
AvaII	GGWCC	1 cut(s)	1232
BalI	TGGCCA	1 cut(s)	943
BamHI	GGATCC	2 cut(s)	883, 1118
BanI	GGYRCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	95, 98, 226
BccI	CCATC	4 cut(s)	173, 952, 1039, 1109
BciT130I	CCWGG	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	833
BcnI	CCSGG	1 cut(s)	1236
BcoDI	GTCTC	2 cut(s)	696, 838
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	2 cut(s)	267, 735
BfuAI	ACCTGC	1 cut(s)	670
BfuI	GTATCC	1 cut(s)	833
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	3 cut(s)	84, 87, 215
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	3 cut(s)	85, 88, 216
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	23, 1236
Bme18I	GGWCC	1 cut(s)	1232
BmgT120I	GGNCC	1 cut(s)	1232
BmiI	GGNNCC	8 cut(s)	353, 379, 486, 582, 640, 885, 1120, 1234
BmrFI	CCNGG	2 cut(s)	23, 1236
BmrI	ACTGGG	2 cut(s)	847, 1216
BmsI	GCATC	5 cut(s)	54, 730, 831, 897, 986
BmuI	ACTGGG	2 cut(s)	847, 1216
Bpu10I	CCTNAGC	2 cut(s)	558, 778
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	1236
Bsa29I	ATCGAT	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	744
BsaWI	WCCGGW	3 cut(s)	354, 688, 755
BsaXI	ACNNNNNCTCC	4 cut(s)	987, 990, 1017, 1020
Bsc4I	CCNNNNNNNGG	4 cut(s)	393, 836, 893, 1070
Bse118I	RCCGGY	2 cut(s)	354, 755
Bse1I	ACTGG	5 cut(s)	734, 830, 853, 944, 1211
Bse3DI	GCAATG	2 cut(s)	816, 1204
Bse8I	GATNNNNATC	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	980
BseGI	GGATG	2 cut(s)	412, 912
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	4 cut(s)	393, 836, 893, 1070
BseMI	GCAATG	2 cut(s)	816, 1204
BseMII	CTCAG	2 cut(s)	356, 792
BseNI	ACTGG	5 cut(s)	734, 830, 853, 944, 1211
BseRI	GAGGAG	2 cut(s)	406, 1011
BseXI	GCAGC	3 cut(s)	95, 98, 226
BshFI	GGCC	3 cut(s)	265, 943, 1026
BshNI	GGYRCC	1 cut(s)	351
BshTI	ACCGGT	2 cut(s)	354, 755
BshVI	ATCGAT	1 cut(s)	980
BsiSI	CCGG	4 cut(s)	355, 689, 756, 1236
BslFI	GGGAC	3 cut(s)	909, 1218, 1224
BslI	CCNNNNNNNGG	4 cut(s)	393, 836, 893, 1070
BsmAI	GTCTC	2 cut(s)	696, 838
BsmFI	GGGAC	3 cut(s)	909, 1218, 1224
BsnI	GGCC	3 cut(s)	265, 943, 1026
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	5 cut(s)	652, 691, 883, 984, 1118
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	482, 844
BspANI	GGCC	3 cut(s)	265, 943, 1026
BspCNI	CTCAG	2 cut(s)	355, 791
BspDI	ATCGAT	1 cut(s)	980
BspEI	TCCGGA	1 cut(s)	688
BspLI	GGNNCC	8 cut(s)	353, 379, 486, 582, 640, 885, 1120, 1234
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	5 cut(s)	699, 878, 891, 1113, 1126
BspQI	GCTCTTC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	816, 1204
BsrFI	RCCGGY	2 cut(s)	354, 755
BsrI	ACTGG	5 cut(s)	734, 830, 853, 944, 1211
BssAI	RCCGGY	2 cut(s)	354, 755
BssMI	GATC	5 cut(s)	652, 691, 883, 984, 1118
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	6 cut(s)	197, 662, 800, 1017, 1175, 1229
Bst6I	CTCTTC	2 cut(s)	106, 725
BstC8I	GCNNGC	5 cut(s)	91, 219, 673, 677, 820
BstDEI	CTNAG	4 cut(s)	9, 342, 558, 778
BstF5I	GGATG	2 cut(s)	412, 912
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	5 cut(s)	655, 694, 886, 987, 1121
BstMAI	GTCTC	2 cut(s)	696, 838
BstMBI	GATC	5 cut(s)	652, 691, 883, 984, 1118
BstMWI	GCNNNNNNNGC	3 cut(s)	625, 749, 815
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	21, 1234
BstV1I	GCAGC	3 cut(s)	95, 98, 226
BstX2I	RGATCY	4 cut(s)	652, 691, 883, 1118
BstYI	RGATCY	4 cut(s)	652, 691, 883, 1118
Bsu15I	ATCGAT	1 cut(s)	980
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	265, 943, 1026
BsuTUI	ATCGAT	1 cut(s)	980
BtsCI	GGATG	2 cut(s)	412, 912
BtsIMutI	CAGTG	1 cut(s)	805
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	5 cut(s)	91, 219, 673, 677, 820
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	2 cut(s)	354, 755
Cfr13I	GGNCC	1 cut(s)	1232
ClaI	ATCGAT	1 cut(s)	980
Csp6I	GTAC	4 cut(s)	369, 547, 937, 1152
CspAI	ACCGGT	2 cut(s)	354, 755
CspCI	CAANNNNNGTGG	2 cut(s)	1016, 1051
CviAII	CATG	1 cut(s)	388
CviQI	GTAC	4 cut(s)	369, 547, 937, 1152
DdeI	CTNAG	4 cut(s)	9, 342, 558, 778
DpnI	GATC	5 cut(s)	654, 693, 885, 986, 1120
DpnII	GATC	5 cut(s)	652, 691, 883, 984, 1118
EaeI	YGGCCR	1 cut(s)	941
Eam1104I	CTCTTC	2 cut(s)	106, 725
EarI	CTCTTC	2 cut(s)	106, 725
Eco147I	AGGCCT	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	1 cut(s)	1232
Eco57I	CTGAAG	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	391
FaqI	GGGAC	3 cut(s)	909, 1218, 1224
FatI	CATG	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	84, 87, 215
FokI	GGATG	2 cut(s)	419, 919
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	3 cut(s)	84, 87, 215
FspBI	CTAG	2 cut(s)	267, 735
FspI	TGCGCA	1 cut(s)	82
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	3 cut(s)	84, 87, 215
HaeIII	GGCC	3 cut(s)	265, 943, 1026
HapII	CCGG	4 cut(s)	355, 689, 756, 1236
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	4 cut(s)	172, 253, 685, 717
HpaII	CCGG	4 cut(s)	355, 689, 756, 1236
HphI	GGTGA	6 cut(s)	37, 73, 133, 694, 819, 1150
Hpy166II	GTNNAC	1 cut(s)	1009
Hpy188I	TCNGA	4 cut(s)	171, 258, 1021, 1098
Hpy188III	TCNNGA	5 cut(s)	176, 689, 837, 877, 1064
Hpy8I	GTNNAC	1 cut(s)	1009
HpyAV	CCTTC	7 cut(s)	244, 275, 368, 530, 874, 1016, 1064
HpyCH4III	ACNGT	6 cut(s)	197, 662, 800, 1017, 1175, 1229
HpyCH4V	TGCA	2 cut(s)	910, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	625, 749, 815
HpyF3I	CTNAG	4 cut(s)	9, 342, 558, 778
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	81
Kpn2I	TCCGGA	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	652, 691, 883, 984, 1118
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	4 cut(s)	5, 554, 580, 815
Lsp1109I	GCAGC	3 cut(s)	95, 98, 226
LweI	GCATC	5 cut(s)	54, 730, 831, 897, 986
MaeI	CTAG	2 cut(s)	267, 735
MaeIII	GTNAC	4 cut(s)	269, 800, 1055, 1088
MalI	GATC	5 cut(s)	654, 693, 885, 986, 1120
MboI	GATC	5 cut(s)	652, 691, 883, 984, 1118
MboII	GAAGA	6 cut(s)	93, 136, 460, 712, 761, 1079
MflI	RGATCY	4 cut(s)	652, 691, 883, 1118
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	943
MluCI	AATT	3 cut(s)	605, 847, 911
MluNI	TGGCCA	1 cut(s)	943
MlyI	GAGTC	3 cut(s)	181, 694, 711
MmeI	TCCRAC	2 cut(s)	1146, 1194
Mox20I	TGGCCA	1 cut(s)	943
MroI	TCCGGA	1 cut(s)	688
MscI	TGGCCA	1 cut(s)	943
MseI	TTAA	3 cut(s)	159, 432, 657
MslI	CAYNNNNRTG	3 cut(s)	357, 386, 809
Msp20I	TGGCCA	1 cut(s)	943
MspI	CCGG	4 cut(s)	355, 689, 756, 1236
MspR9I	CCNGG	2 cut(s)	23, 1236
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	625, 749, 815
NciI	CCSGG	1 cut(s)	1236
NdeII	GATC	5 cut(s)	652, 691, 883, 984, 1118
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	8 cut(s)	353, 379, 486, 582, 640, 885, 1120, 1234
NmuCI	GTSAC	2 cut(s)	800, 1055
NsbI	TGCGCA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	836
PinAI	ACCGGT	2 cut(s)	354, 755
PkrI	GCNGC	3 cut(s)	85, 88, 216
PleI	GAGTC	3 cut(s)	180, 693, 711
PpsI	GAGTC	3 cut(s)	180, 693, 711
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	8 cut(s)	353, 379, 486, 582, 640, 885, 1120, 1234
PspPI	GGNCC	1 cut(s)	1232
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	4 cut(s)	652, 691, 883, 1118
RsaI	GTAC	4 cut(s)	370, 548, 938, 1153
RsaNI	GTAC	4 cut(s)	369, 547, 937, 1152
RseI	CAYNNNNRTG	3 cut(s)	357, 386, 809
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	3 cut(s)	159, 432, 657
SatI	GCNGC	3 cut(s)	84, 87, 215
Sau3AI	GATC	5 cut(s)	652, 691, 883, 984, 1118
Sau96I	GGNCC	1 cut(s)	1232
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	3 cut(s)	181, 694, 711
ScrFI	CCNGG	2 cut(s)	23, 1236
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	5 cut(s)	54, 730, 831, 897, 986
SinI	GGWCC	1 cut(s)	1232
SmiMI	CAYNNNNRTG	3 cut(s)	357, 386, 809
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	3 cut(s)	605, 847, 911
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	482, 844
SspMI	CTAG	2 cut(s)	267, 735
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	2 cut(s)	21, 1234
TaaI	ACNGT	6 cut(s)	197, 662, 800, 1017, 1175, 1229
TaqI	TCGA	3 cut(s)	192, 980, 987
TasI	AATT	3 cut(s)	605, 847, 911
TatI	WGTACW	2 cut(s)	368, 546
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	3 cut(s)	159, 432, 657
Tru9I	TTAA	3 cut(s)	159, 432, 657
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	2 cut(s)	800, 1055
TseI	GCWGC	3 cut(s)	83, 86, 214
Tsp45I	GTSAC	2 cut(s)	800, 1055
TspDTI	ATGAA	1 cut(s)	775
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	805
Van91I	CCANNNNNTGG	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	1232
XapI	RAATTY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XspI	CTAG	2 cut(s)	267, 735
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.