Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004991

Physical Location & Seq

Genomic Coordinates Forward (+)

294729 .. 297749

Gene Structure 3021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGTTTGCTGGGTGCAGCAGAGGGAGCTCAGGGAGAGCTCTGGCTCTGGCCCTTTGCCTATTGGCCTTGATATCTCTATCTTGTGCTGCCAGATTGAGTGCTTCTTCAAGGCAGAACCTTGATGTCCAGAGGCACCTCAACCGCTTGAACAAACCCGCCGTGAAAAGCATCAAGAGCCCAGATGGAGATGTTATAGACTGTGTTCATATCTCTCAGCAACCGGCTTTCGATCACCCTTACCTCAAAGACCACAAAATCCAGATGAGGCCTAGCTACCATCCAGAAGGGTTGTTTGCTGAGAGCAAAGTGGCCGAAAAAACAAAAGAAAAAGCAAATACCCAGCTGTGGCATGTGAATGGGAGATGCCCGGAAGATACTATTCCGGTAAGGAGAACGAAGAAAGATGATATTCTGAGAGCGAGTTCGGTGAAACATTATGGAAGGAAGAAGCAGAGAACCATACCAAAATCTGCATCGATCCTGATCTTGCCAATGAAAGTGGTCATCAGTTTTGCAATTGCTTATGTCAATGGAGATAAGTATTTTGGAGCTAAGGCAACCATAAATGTTTGGGAGCCCAAGATACAACAGCCTAATGAGTTCAGCTTGTCTCAGCTGTGGGTATTAGGAGGGTCTTTTGGTGAAGATCTGAACAGCATTGAAGCTGGCTGGCAGGTTAGCCCGGACCTCTATGGTGACAACAACACAAGACTGTTTACCTACTGGACTAGTGATGCATATCAAGCCACTGGTTGCTACAACCTCCTCTGCTCAGGCTTCATTCAAATCAACAGCGAAATAGCAATGGGTGCAAGCATCTCTCCAGTTTCGGGTTTACGAGGATCGCAGTATGATATCAGCATACTCGTCTGGAAGGATCCAAAGGAGGGGCATTGGTGGATGCAATTCGGGAACGATTATGTGCTGGGTTATTGGCCTTCATTCCTCTTCTCATACTTGGCTGACAGTGCTTCCATGATTGAGTGGGGAGGTGAGGTTGTGAATTCACAACCGGACGGCCAGCACACATCGACCCAAATGGGCAGCGGACGTTTTCCGGAGGAAGGTTTTGGCAAGGCAAGTTATTTCAGAAACATTCAAGTTGTTGATAGCTCAAATAATCTCAAGGTCCCCAAAGGGTTGGGCACCTTCACCGAGCAATCAAACTGCTATGATGTTCAAATTGGAAGTAATGGGGATTGGGGTCATTACTTTTACTACGGAGGACCCGGTAAAAACCCGAATTGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

419

Amino Acids

46.46

Weight (kDa)

8.25

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55360 AT3G13510 AT5G56530 AT5G56530
fragaria_vesca	FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750
malus_domestica	MD03G1003500.v1.1 MD11G1003400.v1.1
prunus_persica	Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1
pyrus_communis	pycom03g00350 pycom11g00300
rosa_chinensis	RchiOBHm_Chr5g0083821
rosa_laevigata	RLG00000037054
rosa_multiflora	Rmu_sc0024007.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000770
rosa_rugosa	Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300
rosa_samantha	Rh5AG539300 Rh5CG586500 Rh5DG573000
rosa_wichuraiana	Rw5G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccB1I	GGYRCC	2 cut(s)	135, 1148
AccIII	TCCGGA	1 cut(s)	1060
AciI	CCGC	3 cut(s)	145, 159, 1050
AclWI	GGATC	4 cut(s)	475, 853, 875, 888
AcoI	YGGCCR	2 cut(s)	312, 1021
AcsI	RAATTY	1 cut(s)	1006
AfiI	CCNNNNNNNGG	4 cut(s)	348, 833, 890, 1067
AgsI	TTSAA	6 cut(s)	111, 151, 665, 788, 1103, 1184
AhlI	ACTAGT	1 cut(s)	731
AluBI	AGCT	9 cut(s)	30, 41, 276, 346, 554, 609, 619, 668, 1116
AluI	AGCT	9 cut(s)	30, 41, 276, 346, 554, 609, 619, 668, 1116
Alw21I	GWGCWC	2 cut(s)	32, 43
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	4 cut(s)	475, 853, 875, 888
Aor13HI	TCCGGA	1 cut(s)	1060
AoxI	GGCC	6 cut(s)	51, 66, 269, 312, 938, 1021
ApeKI	GCWGC	3 cut(s)	18, 89, 1047
ApoI	RAATTY	1 cut(s)	1006
AspS9I	GGNCC	4 cut(s)	52, 688, 1132, 1229
AsuC2I	CCSGG	3 cut(s)	371, 686, 1233
AsuHPI	GGTGA	6 cut(s)	227, 442, 656, 710, 1007, 1147
AvaII	GGWCC	3 cut(s)	688, 1132, 1229
BaeGI	GKGCMC	1 cut(s)	1151
BamHI	GGATCC	1 cut(s)	880
BanI	GGYRCC	2 cut(s)	135, 1148
BanII	GRGCYC	4 cut(s)	32, 43, 182, 582
Bbv12I	GWGCWC	2 cut(s)	32, 43
BbvI	GCAGC	3 cut(s)	30, 76, 1059
BccI	CCATC	2 cut(s)	179, 288
BceAI	ACGGC	2 cut(s)	146, 1036
BcnI	CCSGG	3 cut(s)	371, 686, 1233
BcoDI	GTCTC	1 cut(s)	618
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	2 cut(s)	273, 732
BfuAI	ACCTGC	1 cut(s)	667
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	3 cut(s)	19, 90, 1048
BlsI	GCNGC	3 cut(s)	20, 91, 1049
Bme1390I	CCNGG	3 cut(s)	371, 686, 1233
Bme18I	GGWCC	3 cut(s)	688, 1132, 1229
BmgT120I	GGNCC	4 cut(s)	52, 688, 1132, 1229
BmiI	GGNNCC	6 cut(s)	137, 579, 882, 1134, 1150, 1231
BmrFI	CCNGG	3 cut(s)	371, 686, 1233
BmsI	GCATC	6 cut(s)	180, 356, 485, 727, 828, 894
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	3 cut(s)	31, 555, 775
BpuEI	CTTGAG	1 cut(s)	1112
BpuMI	CCSGG	3 cut(s)	371, 686, 1233
Bsa29I	ATCGAT	1 cut(s)	479
BsaBI	GATNNNNATC	2 cut(s)	485, 741
BsaWI	WCCGGW	3 cut(s)	385, 1015, 1060
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	348, 833, 890, 1067
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	731, 757, 827
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	2 cut(s)	485, 741
BseAI	TCCGGA	1 cut(s)	1060
BseCI	ATCGAT	1 cut(s)	479
BseGI	GGATG	2 cut(s)	280, 909
BseJI	GATNNNNATC	2 cut(s)	485, 741
BseLI	CCNNNNNNNGG	4 cut(s)	348, 833, 890, 1067
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	6 cut(s)	45, 230, 291, 407, 629, 789
BseNI	ACTGG	3 cut(s)	731, 757, 827
BseRI	GAGGAG	1 cut(s)	758
BseSI	GKGCMC	1 cut(s)	1151
BseXI	GCAGC	3 cut(s)	30, 76, 1059
BseYI	CCCAGC	3 cut(s)	11, 342, 928
BsgI	GTGCAG	1 cut(s)	37
BshFI	GGCC	6 cut(s)	53, 68, 271, 314, 940, 1023
BshNI	GGYRCC	2 cut(s)	135, 1148
BshVI	ATCGAT	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	32, 43
BsiSI	CCGG	7 cut(s)	224, 371, 386, 686, 1016, 1061, 1233
BslFI	GGGAC	1 cut(s)	1118
BslI	CCNNNNNNNGG	4 cut(s)	348, 833, 890, 1067
BsmAI	GTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	1118
BsnI	GGCC	6 cut(s)	53, 68, 271, 314, 940, 1023
Bsp1286I	GDGCHC	5 cut(s)	32, 43, 182, 582, 1151
Bsp13I	TCCGGA	1 cut(s)	1060
Bsp143I	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
BspACI	CCGC	3 cut(s)	145, 159, 1050
BspANI	GGCC	6 cut(s)	53, 68, 271, 314, 940, 1023
BspCNI	CTCAG	6 cut(s)	44, 229, 292, 408, 628, 788
BspDI	ATCGAT	1 cut(s)	479
BspEI	TCCGGA	1 cut(s)	1060
BspLI	GGNNCC	6 cut(s)	137, 579, 882, 1134, 1150, 1231
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	4 cut(s)	475, 853, 875, 888
BspT107I	GGYRCC	2 cut(s)	135, 1148
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	3 cut(s)	731, 757, 827
BssAI	RCCGGY	1 cut(s)	223
BssMI	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
Bst4CI	ACNGT	3 cut(s)	203, 717, 971
Bst6I	CTCTTC	1 cut(s)	956
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstC8I	GCNNGC	4 cut(s)	670, 674, 817, 1025
BstDEI	CTNAG	7 cut(s)	31, 216, 300, 416, 555, 615, 775
BstF5I	GGATG	2 cut(s)	280, 909
BstKTI	GATC	6 cut(s)	235, 483, 489, 652, 848, 883
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 177, 746, 812, 971
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	369, 684, 1231
BstSLI	GKGCMC	1 cut(s)	1151
BstV1I	GCAGC	3 cut(s)	30, 76, 1059
BstX2I	RGATCY	2 cut(s)	649, 880
BstXI	CCANNNNNNTGG	1 cut(s)	1144
BstYI	RGATCY	2 cut(s)	649, 880
Bsu15I	ATCGAT	1 cut(s)	479
BsuRI	GGCC	6 cut(s)	53, 68, 271, 314, 940, 1023
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	280, 909
BtsIMutI	CAGTG	2 cut(s)	750, 976
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	4 cut(s)	670, 674, 817, 1025
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	4 cut(s)	52, 688, 1132, 1229
ClaI	ATCGAT	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	2 cut(s)	353, 979
DdeI	CTNAG	7 cut(s)	31, 216, 300, 416, 555, 615, 775
DpnI	GATC	6 cut(s)	234, 482, 488, 651, 847, 882
DpnII	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
EaeI	YGGCCR	2 cut(s)	312, 1021
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
Ecl136II	GAGCTC	2 cut(s)	30, 41
Eco147I	AGGCCT	1 cut(s)	271
Eco24I	GRGCYC	4 cut(s)	32, 43, 182, 582
Eco32I	GATATC	2 cut(s)	75, 859
Eco47I	GGWCC	3 cut(s)	688, 1132, 1229
Eco53kI	GAGCTC	2 cut(s)	30, 41
EcoICRI	GAGCTC	2 cut(s)	30, 41
EcoO109I	RGGNCCY	2 cut(s)	1132, 1229
EcoRI	GAATTC	1 cut(s)	1006
EcoRV	GATATC	2 cut(s)	75, 859
EcoT22I	ATGCAT	1 cut(s)	742
EcoT38I	GRGCYC	4 cut(s)	32, 43, 182, 582
FaeI	CATG	2 cut(s)	356, 982
FaqI	GGGAC	1 cut(s)	1118
FatI	CATG	2 cut(s)	352, 978
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	19, 90, 1048
FokI	GGATG	2 cut(s)	267, 916
FriOI	GRGCYC	4 cut(s)	32, 43, 182, 582
Fsp4HI	GCNGC	3 cut(s)	19, 90, 1048
FspBI	CTAG	2 cut(s)	273, 732
GluI	GCNGC	3 cut(s)	19, 90, 1048
GsaI	CCCAGC	3 cut(s)	15, 346, 932
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	6 cut(s)	53, 68, 271, 314, 940, 1023
HapII	CCGG	7 cut(s)	224, 371, 386, 686, 1016, 1061, 1233
Hin1II	CATG	2 cut(s)	356, 982
HpaII	CCGG	7 cut(s)	224, 371, 386, 686, 1016, 1061, 1233
HphI	GGTGA	6 cut(s)	227, 442, 656, 710, 1007, 1147
Hpy166II	GTNNAC	2 cut(s)	720, 839
Hpy188I	TCNGA	3 cut(s)	417, 654, 1094
Hpy188III	TCNNGA	8 cut(s)	130, 175, 262, 284, 484, 874, 913, 1061
Hpy8I	GTNNAC	2 cut(s)	720, 839
HpyAV	CCTTC	6 cut(s)	281, 438, 871, 951, 1061, 1162
HpyCH4III	ACNGT	3 cut(s)	203, 717, 971
HpyCH4IV	ACGT	1 cut(s)	1054
HpyCH4V	TGCA	6 cut(s)	18, 476, 518, 740, 815, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 177, 746, 812, 971
HpyF3I	CTNAG	7 cut(s)	31, 216, 300, 416, 555, 615, 775
HpySE526I	ACGT	1 cut(s)	1054
Hsp92II	CATG	2 cut(s)	356, 982
Kpn2I	TCCGGA	1 cut(s)	1060
Kzo9I	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
LmnI	GCTCC	3 cut(s)	27, 551, 577
Lsp1109I	GCAGC	3 cut(s)	30, 76, 1059
LweI	GCATC	6 cut(s)	180, 356, 485, 727, 828, 894
MaeI	CTAG	2 cut(s)	273, 732
MaeII	ACGT	1 cut(s)	1054
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	6 cut(s)	234, 482, 488, 651, 847, 882
MboI	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
MboII	GAAGA	6 cut(s)	99, 386, 412, 460, 659, 943
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	2 cut(s)	649, 880
MhlI	GDGCHC	5 cut(s)	32, 43, 182, 582, 1151
MluCI	AATT	5 cut(s)	519, 908, 1006, 1185, 1246
Mph1103I	ATGCAT	1 cut(s)	742
MroI	TCCGGA	1 cut(s)	1060
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	3 cut(s)	346, 619, 1050
MspI	CCGG	7 cut(s)	224, 371, 386, 686, 1016, 1061, 1233
MspR9I	CCNGG	3 cut(s)	371, 686, 1233
MunI	CAATTG	1 cut(s)	519
MwoI	GCNNNNNNNGC	5 cut(s)	27, 177, 746, 812, 971
NciI	CCSGG	3 cut(s)	371, 686, 1233
NdeII	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
NlaIII	CATG	2 cut(s)	356, 982
NlaIV	GGNNCC	6 cut(s)	137, 579, 882, 1134, 1150, 1231
NmuCI	GTSAC	1 cut(s)	698
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	20, 91, 1049
PpuMI	RGGWCCY	2 cut(s)	1132, 1229
Psp124BI	GAGCTC	2 cut(s)	32, 43
Psp5II	RGGWCCY	2 cut(s)	1132, 1229
PspFI	CCCAGC	3 cut(s)	11, 342, 928
PspN4I	GGNNCC	6 cut(s)	137, 579, 882, 1134, 1150, 1231
PspPI	GGNCC	4 cut(s)	52, 688, 1132, 1229
PspPPI	RGGWCCY	2 cut(s)	1132, 1229
PsuI	RGATCY	2 cut(s)	649, 880
PvuII	CAGCTG	2 cut(s)	346, 619
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	2 cut(s)	32, 43
SatI	GCNGC	3 cut(s)	19, 90, 1048
Sau3AI	GATC	6 cut(s)	232, 480, 486, 649, 845, 880
Sau96I	GGNCC	4 cut(s)	52, 688, 1132, 1229
ScrFI	CCNGG	3 cut(s)	371, 686, 1233
SduI	GDGCHC	5 cut(s)	32, 43, 182, 582, 1151
SfaNI	GCATC	6 cut(s)	180, 356, 485, 727, 828, 894
SinI	GGWCC	3 cut(s)	688, 1132, 1229
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	1127
SmoI	CTYRAG	1 cut(s)	1127
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	5 cut(s)	519, 908, 1006, 1185, 1246
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	3 cut(s)	145, 159, 1050
SspMI	CTAG	2 cut(s)	273, 732
SstI	GAGCTC	2 cut(s)	32, 43
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	3 cut(s)	369, 684, 1231
TaaI	ACNGT	3 cut(s)	203, 717, 971
TaiI	ACGT	1 cut(s)	1057
TaqI	TCGA	3 cut(s)	231, 479, 1034
TasI	AATT	5 cut(s)	519, 908, 1006, 1185, 1246
TscAI	CASTG	2 cut(s)	757, 976
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	3 cut(s)	18, 89, 1047
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	4 cut(s)	197, 512, 772, 933
TspGWI	ACGGA	1 cut(s)	1239
TspRI	CASTG	2 cut(s)	757, 976
VpaK11BI	GGWCC	3 cut(s)	688, 1132, 1229
XapI	RAATTY	1 cut(s)	1006
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	2 cut(s)	273, 732
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.