Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004991

Physical Location & Seq

Genomic Coordinates Forward (+)

348978 .. 352232

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G003200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGTTTTGCTCAGTTAAGCGGAGGGAGGTCAAGGAGAGCTTTAGCTCTGGCTCTTTGCGTATGGAGCTTGATCTCTCTGTCTTGTGCTGCGAGATTGACTGATTCCTCAAGGCAGAAGCTTGATGTCCAGAAGCACCTCAACCGCTTGAACAAGCCCGCCGTGAAAAGCATCAAGAGCCCAGACGGGGACATAATAGACTGCGTTCATATCACTCAGCAACCTGCTTTCGATCATCCTTACCTCAAAGACCACAAAATCCAGATGAGGCCTAACTACCACCCAGAAGGGTTATTTAATGAGAACAAGGTAGCTGAAAAAACAAAAGAAAGATCAAACCCACAAGCCCAGCTATGGCATGCGAATGGTAGGTGCCCTGAAGATACTATACCCGTTCGGAGAACAAGGAAGGATGATATTCTGAGAGCAACCTCAGTCAAAGCATATGGAAGGAAGAAGCAGAGATCCATACCAAAGTCAGCAGATCCTGATCTTACCAATGAGAGTGGTCATCAGCATGCAATAGTTTATGTCAATGGAGATAAATATTATGGAGCAAAAGCAACCATAAATGTCTGGGAACCCAAGATACAACAACCTAATGAGTTCAGCTTGTCTCAGCTGTGGATATTAGGAGGGTCTTTTGGTGAAGATCTGAACAGCATTGAAGCTGGTTGGCAGGTCAGCCCAGATCTCTACGGTGACAACAACACAAGACTGTTTACCTACTGGACTAGTGATGCATATCAAGCCACTGGTTGCTACAACCTCCTCTGCTCAGGCTTTATTCAAATCAACAGTGAGATAGCAATGGGTGCAAGCATCTCTCCTGTGTCTGGCCTTCGAGGATCCCAATATGATATCAGTATACTCGTCTGGAAGGATCCAAAAGAGGGGCATTGGTGGATGCAGTTTGGCAATGACTATGTGTTGGGTTATTGGCCTTCTTTCCTCTTCTCATACTTGGCTGACAGTGCTTCCATGATTGAGTGGGGAGGTGAAGTTGTAAATTCAGAGCCTGAAGGGCAGCACACCTCTACTCAAATGGGGAGTGGACGTTTCCCTGAGGAGGGATTTGGGAAGGCAAGTTATTTCAGGAATATTCAAGTTGTTGATAGCTCCAATAATCTCAAGGCCCCCAAAGGGTTGGGCACCTTCACTGAGCAGTCAAACTGTTATGATGTTCAAACTGGCAGCAATGGGGATTGGGGGCATTACTTTTACTATGGAGGCCCAGGTAAAAACCCAAATTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

420

Amino Acids

46.87

Weight (kDa)

7.15

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55360 AT3G13510 AT5G56530 AT5G56530
fragaria_vesca	FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750
malus_domestica	MD03G1003500.v1.1 MD11G1003400.v1.1
prunus_persica	Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1
pyrus_communis	pycom03g00350 pycom11g00300
rosa_chinensis	RchiOBHm_Chr5g0083821
rosa_laevigata	RLG00000037054
rosa_multiflora	Rmu_sc0024007.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000770
rosa_rugosa	Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300
rosa_samantha	Rh5AG539300 Rh5CG586500 Rh5DG573000
rosa_wichuraiana	Rw5G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	232, 670
AccB1I	GGYRCC	2 cut(s)	372, 1151
AccI	GTMKAC	1 cut(s)	868
AciI	CCGC	3 cut(s)	21, 145, 159
AclWI	GGATC	6 cut(s)	459, 479, 843, 856, 878, 891
AcsI	RAATTY	1 cut(s)	1009
AcuI	CTGAAG	2 cut(s)	399, 1041
AfiI	CCNNNNNNNGG	7 cut(s)	187, 354, 836, 893, 1069, 1070, 1143
AgsI	TTSAA	5 cut(s)	151, 668, 791, 1106, 1187
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	1234
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	6 cut(s)	459, 479, 843, 856, 878, 891
AlwNI	CAGNNNCTG	2 cut(s)	488, 1019
AoxI	GGCC	5 cut(s)	269, 838, 941, 1134, 1231
ApeKI	GCWGC	3 cut(s)	89, 1027, 1194
ApoI	RAATTY	1 cut(s)	1009
AspS9I	GGNCC	2 cut(s)	1135, 1232
AsuHPI	GGTGA	3 cut(s)	659, 713, 1010
AxyI	CCTNAGG	1 cut(s)	1065
BaeGI	GKGCMC	2 cut(s)	377, 1154
BamHI	GGATCC	2 cut(s)	848, 883
BanI	GGYRCC	2 cut(s)	372, 1151
BanII	GRGCYC	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbvI	GCAGC	3 cut(s)	76, 1039, 1206
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	1236
BcoDI	GTCTC	1 cut(s)	621
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	1 cut(s)	735
BfuAI	ACCTGC	2 cut(s)	232, 670
BglI	GCCNNNNNGGC	1 cut(s)	1024
BglII	AGATCT	2 cut(s)	652, 691
BisI	GCNGC	3 cut(s)	90, 1028, 1195
BlsI	GCNGC	3 cut(s)	91, 1029, 1196
Bme1390I	CCNGG	1 cut(s)	1236
BmgT120I	GGNCC	2 cut(s)	1135, 1232
BmiI	GGNNCC	6 cut(s)	374, 582, 850, 885, 1137, 1153
BmrFI	CCNGG	1 cut(s)	1236
BmsI	GCATC	4 cut(s)	180, 730, 831, 897
Bpu10I	CCTNAGC	1 cut(s)	778
BpuEI	CTTGAG	2 cut(s)	94, 1115
BsaBI	GATNNNNATC	2 cut(s)	489, 744
BsaJI	CCNNGG	1 cut(s)	1234
BsaXI	ACNNNNNCTCC	4 cut(s)	987, 1017, 1042, 1072
Bsc4I	CCNNNNNNNGG	7 cut(s)	187, 354, 836, 893, 1069, 1070, 1143
Bse1I	ACTGG	3 cut(s)	734, 760, 1195
Bse21I	CCTNAGG	1 cut(s)	1065
Bse3DI	GCAATG	3 cut(s)	816, 925, 1204
Bse8I	GATNNNNATC	2 cut(s)	489, 744
BseBI	CCWGG	1 cut(s)	1236
BseDI	CCNNGG	1 cut(s)	1234
BseGI	GGATG	3 cut(s)	235, 418, 912
BseJI	GATNNNNATC	2 cut(s)	489, 744
BseLI	CCNNNNNNNGG	7 cut(s)	187, 354, 836, 893, 1069, 1070, 1143
BseMI	GCAATG	3 cut(s)	816, 925, 1204
BseMII	CTCAG	8 cut(s)	26, 230, 413, 447, 632, 792, 1056, 1152
BseNI	ACTGG	3 cut(s)	734, 760, 1195
BseRI	GAGGAG	2 cut(s)	761, 1082
BseSI	GKGCMC	2 cut(s)	377, 1154
BseXI	GCAGC	3 cut(s)	76, 1039, 1206
BseYI	CCCAGC	1 cut(s)	348
BshFI	GGCC	5 cut(s)	271, 840, 943, 1136, 1233
BshNI	GGYRCC	2 cut(s)	372, 1151
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	7 cut(s)	187, 354, 836, 893, 1069, 1070, 1143
BsmAI	GTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	5 cut(s)	271, 840, 943, 1136, 1233
Bsp1286I	GDGCHC	3 cut(s)	182, 377, 1154
BspACI	CCGC	3 cut(s)	21, 145, 159
BspANI	GGCC	5 cut(s)	271, 840, 943, 1136, 1233
BspCNI	CTCAG	8 cut(s)	25, 229, 414, 446, 631, 791, 1057, 1153
BspLI	GGNNCC	6 cut(s)	374, 582, 850, 885, 1137, 1153
BspMI	ACCTGC	2 cut(s)	232, 670
BspPI	GGATC	6 cut(s)	459, 479, 843, 856, 878, 891
BspT107I	GGYRCC	2 cut(s)	372, 1151
BsrDI	GCAATG	3 cut(s)	816, 925, 1204
BsrI	ACTGG	3 cut(s)	734, 760, 1195
BssECI	CCNNGG	1 cut(s)	1234
BssNAI	GTATAC	1 cut(s)	869
Bst1107I	GTATAC	1 cut(s)	869
Bst2UI	CCWGG	1 cut(s)	1236
Bst4CI	ACNGT	5 cut(s)	701, 720, 800, 974, 1175
Bst6I	CTCTTC	1 cut(s)	959
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstC8I	GCNNGC	4 cut(s)	159, 360, 519, 820
BstDEI	CTNAG	8 cut(s)	12, 216, 422, 433, 618, 778, 1065, 1161
BstF5I	GGATG	3 cut(s)	235, 418, 912
BstMAI	GTCTC	1 cut(s)	621
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 177, 749, 815, 974, 1024
BstNI	CCWGG	1 cut(s)	1236
BstNSI	RCATGY	2 cut(s)	362, 521
BstSCI	CCNGG	1 cut(s)	1234
BstSLI	GKGCMC	2 cut(s)	377, 1154
BstV1I	GCAGC	3 cut(s)	76, 1039, 1206
BstX2I	RGATCY	6 cut(s)	464, 484, 652, 691, 848, 883
BstXI	CCANNNNNNTGG	1 cut(s)	1147
BstYI	RGATCY	6 cut(s)	464, 484, 652, 691, 848, 883
BstZ17I	GTATAC	1 cut(s)	869
Bsu36I	CCTNAGG	1 cut(s)	1065
BsuRI	GGCC	5 cut(s)	271, 840, 943, 1136, 1233
BtsCI	GGATG	3 cut(s)	235, 418, 912
BtsIMutI	CAGTG	4 cut(s)	753, 805, 979, 1158
BveI	ACCTGC	2 cut(s)	232, 670
Cac8I	GCNNGC	4 cut(s)	159, 360, 519, 820
CaiI	CAGNNNCTG	2 cut(s)	488, 1019
Cfr13I	GGNCC	2 cut(s)	1135, 1232
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	4 cut(s)	359, 518, 982, 1257
DdeI	CTNAG	8 cut(s)	12, 216, 422, 433, 618, 778, 1065, 1161
Eam1104I	CTCTTC	1 cut(s)	959
EarI	CTCTTC	1 cut(s)	959
Eco147I	AGGCCT	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	862
Eco57I	CTGAAG	2 cut(s)	399, 1041
Eco81I	CCTNAGG	1 cut(s)	1065
EcoO109I	RGGNCCY	1 cut(s)	1135
EcoRII	CCWGG	1 cut(s)	1234
EcoRV	GATATC	1 cut(s)	862
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	182
FaeI	CATG	4 cut(s)	362, 521, 985, 1260
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	4 cut(s)	358, 517, 981, 1256
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	90, 1028, 1195
FokI	GGATG	3 cut(s)	222, 425, 919
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	90, 1028, 1195
FspBI	CTAG	1 cut(s)	735
GluI	GCNGC	3 cut(s)	90, 1028, 1195
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	5 cut(s)	271, 840, 943, 1136, 1233
Hin1II	CATG	4 cut(s)	362, 521, 985, 1260
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	3 cut(s)	659, 713, 1010
Hpy166II	GTNNAC	3 cut(s)	723, 869, 1055
Hpy188I	TCNGA	4 cut(s)	399, 423, 657, 1015
Hpy188III	TCNNGA	6 cut(s)	130, 175, 262, 488, 877, 1096
Hpy8I	GTNNAC	3 cut(s)	723, 869, 1055
HpyAV	CCTTC	9 cut(s)	281, 403, 444, 851, 874, 954, 1016, 1075, 1165
HpyCH4III	ACNGT	5 cut(s)	701, 720, 800, 974, 1175
HpyCH4IV	ACGT	1 cut(s)	1057
HpyCH4V	TGCA	4 cut(s)	521, 743, 818, 910
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 177, 749, 815, 974, 1024
HpyF3I	CTNAG	8 cut(s)	12, 216, 422, 433, 618, 778, 1065, 1161
HpySE526I	ACGT	1 cut(s)	1057
Hsp92II	CATG	4 cut(s)	362, 521, 985, 1260
LmnI	GCTCC	3 cut(s)	66, 554, 1124
Lsp1109I	GCAGC	3 cut(s)	76, 1039, 1206
LweI	GCATC	4 cut(s)	180, 730, 831, 897
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	1 cut(s)	1057
MaeIII	GTNAC	1 cut(s)	701
MboII	GAAGA	4 cut(s)	392, 466, 662, 946
MflI	RGATCY	6 cut(s)	464, 484, 652, 691, 848, 883
MhlI	GDGCHC	3 cut(s)	182, 377, 1154
MluCI	AATT	2 cut(s)	1009, 1249
Mph1103I	ATGCAT	1 cut(s)	745
MseI	TTAA	2 cut(s)	17, 297
MslI	CAYNNNNRTG	2 cut(s)	363, 516
MspA1I	CMGCKG	1 cut(s)	622
MspR9I	CCNGG	1 cut(s)	1236
MvaI	CCWGG	1 cut(s)	1236
MwoI	GCNNNNNNNGC	6 cut(s)	66, 177, 749, 815, 974, 1024
NdeI	CATATG	1 cut(s)	445
NlaIII	CATG	4 cut(s)	362, 521, 985, 1260
NlaIV	GGNNCC	6 cut(s)	374, 582, 850, 885, 1137, 1153
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	2 cut(s)	362, 521
PaeI	GCATGC	2 cut(s)	362, 521
PceI	AGGCCT	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	91, 1029, 1196
Psp6I	CCWGG	1 cut(s)	1234
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	1234
PspN4I	GGNNCC	6 cut(s)	374, 582, 850, 885, 1137, 1153
PspPI	GGNCC	2 cut(s)	1135, 1232
PsrI	GAACNNNNNNTAC	2 cut(s)	573, 605
PstNI	CAGNNNCTG	2 cut(s)	488, 1019
PsuI	RGATCY	6 cut(s)	464, 484, 652, 691, 848, 883
PvuII	CAGCTG	1 cut(s)	622
RseI	CAYNNNNRTG	2 cut(s)	363, 516
SaqAI	TTAA	2 cut(s)	17, 297
SatI	GCNGC	3 cut(s)	90, 1028, 1195
Sau96I	GGNCC	2 cut(s)	1135, 1232
ScrFI	CCNGG	1 cut(s)	1236
SduI	GDGCHC	3 cut(s)	182, 377, 1154
SfaNI	GCATC	4 cut(s)	180, 730, 831, 897
SmiMI	CAYNNNNRTG	2 cut(s)	363, 516
SmlI	CTYRAG	2 cut(s)	109, 1130
SmoI	CTYRAG	2 cut(s)	109, 1130
SpeI	ACTAGT	1 cut(s)	734
SphI	GCATGC	2 cut(s)	362, 521
Sse9I	AATT	2 cut(s)	1009, 1249
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	3 cut(s)	21, 145, 159
SspI	AATATT	2 cut(s)	548, 1102
SspMI	CTAG	1 cut(s)	735
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	1234
TaaI	ACNGT	5 cut(s)	701, 720, 800, 974, 1175
TaiI	ACGT	1 cut(s)	1060
TaqI	TCGA	2 cut(s)	231, 844
TasI	AATT	2 cut(s)	1009, 1249
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	17, 297
Tru9I	TTAA	2 cut(s)	17, 297
TscAI	CASTG	4 cut(s)	760, 805, 979, 1165
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	3 cut(s)	89, 1027, 1194
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	4 cut(s)	760, 805, 979, 1165
XapI	RAATTY	1 cut(s)	1009
XceI	RCATGY	2 cut(s)	362, 521
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	1 cut(s)	735
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.