Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004991

Physical Location & Seq

Genomic Coordinates Reverse (-)

88031689 .. 88034476

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG573000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTTTCGCTCAGTTTAGCAGAGGGAGGTCTAGGTTAGCTCTAGCAGTGCTGGTTTGCTTCTTGTTCATCTCTCTGTCCTGTGCGGCCAGATTGACTGCTTCATCAAGACAGAAGCTTGATGTTCAGAAGCACCTCAACCGTTTGAACAAGCCTGCTGTGAAAAGCATCAAGAGCCCAGATGGGGATATAATAGACTGTGTTCACATCTCTCAGCAACCTGCTTTTGATCATCCTTACCTCAAAGACCACAAAATTCAGATGAGGCCTAACTACCACCCAGAAGGCTTATTTCAAGGAAACAAAGTTGCTGAAAAATCGAAAGAAAAGCCAAACACCCAGCTGTGGCATGTGAATGGTAGATGCCCTGAAGATACCATACCCGTGAGGAGGACGAAGAAAGATGATATTCTGAGAGCAAGCTCAGTCAAAAGATATGGACGGAAGAAGGAGAAAACCATTCCAAAGTCTGCAGATCCTGATCTTGCCAATGAGAGTGGTCATCAGCATGCAATTGCTTATGTAAATGGAGACAAGTATTTTGGAGCAAAAGCAACCATCAATGTCTGGGAGCCCAAGATTCAACAGCCTAATGAGTTCAGCTTGTCTCAGCTTTGGATATTAGGAGGGTCTTTTGGTGAAGACCTGAACAGCATTGAAGCTGGTTGGCAGGTCAGCCCAGACCTCTATGGTGACAACAACACAAGACTATTTACCTATTGGACTAGTGATGCATATCAAGCCACTGGTTGCTACAACCTCCTGTGCTCAGGCTTTATTCAAATCAACAGTGAAATAGCAATGGGCGCAAGCATCTCTCCTGTGTCGAGCTACCGAACTTCCCAATACGATATCAGTATACTTGTCTGGAAGGATCCAAAGGAGGGGCATTGGTGGATGCAGTTCGGCAATGACTATGTGTTGGGGTATTGGCCTTCTTTCCTGTTCTCTTACTTGGCCGACAGTGCTTCCATGATTGAGTGGGGAGGTGAGGTTGTAAATTCGCAGTCGGATGGCCGCCACACCTCAACTCAAATGGGCAGTGGTCGTTTCCCGGAGGAGGGTTTTGGAAAATCAAGTTATTTCAGGAACATTCAAGTAGTTGATAGTTCCAATAATCTCAAGGCCCCCAAAGGGTTAGGCACCTTCACCGAGCAGTCAAACTGCTATGATGTTCAGACAGGAAGTAATGGGGATTGGGGTCACTACTTTTACTATGGAGGACCAGGTAGAAACGGAAATTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

416

Amino Acids

46.67

Weight (kDa)

8.46

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	56 - 174	2.5e-48	Neprosin activation peptide
Neprosin	PF03080	198 - 409	9.1e-87	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55360 AT3G13510 AT5G56530 AT5G56530
fragaria_vesca	FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750
malus_domestica	MD03G1003500.v1.1 MD11G1003400.v1.1
prunus_persica	Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1
pyrus_communis	pycom03g00350 pycom11g00300
rosa_chinensis	RchiOBHm_Chr5g0083821
rosa_laevigata	RLG00000037054
rosa_multiflora	Rmu_sc0024007.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000770
rosa_rugosa	Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300
rosa_samantha	Rh5AG539300 Rh5CG586500 Rh5DG573000
rosa_wichuraiana	Rw5G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	229, 661
AccB1I	GGYRCC	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	859
AciI	CCGC	2 cut(s)	86, 1018
AclWI	GGATC	3 cut(s)	470, 869, 882
AcoI	YGGCCR	3 cut(s)	87, 957, 1015
AcsI	RAATTY	2 cut(s)	255, 1000
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	7 cut(s)	184, 345, 390, 884, 1060, 1061, 1134
AgsI	TTSAA	6 cut(s)	148, 296, 584, 659, 782, 1097
AhlI	ACTAGT	1 cut(s)	725
AjnI	CCWGG	1 cut(s)	1225
AluBI	AGCT	8 cut(s)	41, 118, 343, 423, 603, 613, 662, 831
AluI	AGCT	8 cut(s)	41, 118, 343, 423, 603, 613, 662, 831
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	2 cut(s)	525, 612
AlwI	GGATC	3 cut(s)	470, 869, 882
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	6 cut(s)	87, 266, 932, 957, 1015, 1125
ApoI	RAATTY	2 cut(s)	255, 1000
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AspLEI	GCGC	1 cut(s)	809
AspS9I	GGNCC	2 cut(s)	1126, 1223
AsuC2I	CCSGG	1 cut(s)	1055
AsuHPI	GGTGA	4 cut(s)	650, 704, 1001, 1141
AvaII	GGWCC	1 cut(s)	1223
BamHI	GGATCC	1 cut(s)	874
BanI	GGYRCC	1 cut(s)	1142
BanII	GRGCYC	2 cut(s)	179, 576
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	770
BccI	CCATC	3 cut(s)	176, 566, 1007
BciT130I	CCWGG	1 cut(s)	1227
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	1055
BcoDI	GTCTC	2 cut(s)	525, 612
BcuI	ACTAGT	1 cut(s)	725
BfaI	CTAG	3 cut(s)	33, 44, 726
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	2 cut(s)	229, 661
BisI	GCNGC	2 cut(s)	87, 1018
BlsI	GCNGC	2 cut(s)	88, 1019
Bme1390I	CCNGG	2 cut(s)	1055, 1227
Bme18I	GGWCC	1 cut(s)	1223
BmgT120I	GGNCC	2 cut(s)	1126, 1223
BmiI	GGNNCC	4 cut(s)	573, 876, 1128, 1144
BmrFI	CCNGG	2 cut(s)	1055, 1227
BmsI	GCATC	5 cut(s)	177, 353, 721, 822, 888
BpiI	GAAGAC	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	1106
BpuMI	CCSGG	1 cut(s)	1055
BsaBI	GATNNNNATC	2 cut(s)	480, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	7 cut(s)	184, 345, 390, 884, 1060, 1061, 1134
Bse1I	ACTGG	1 cut(s)	751
Bse3DI	GCAATG	2 cut(s)	807, 916
Bse8I	GATNNNNATC	2 cut(s)	480, 735
BseBI	CCWGG	1 cut(s)	1227
BseGI	GGATG	3 cut(s)	232, 903, 1018
BseJI	GATNNNNATC	2 cut(s)	480, 735
BseLI	CCNNNNNNNGG	7 cut(s)	184, 345, 390, 884, 1060, 1061, 1134
BseMI	GCAATG	2 cut(s)	807, 916
BseMII	CTCAG	6 cut(s)	26, 227, 404, 438, 623, 783
BseNI	ACTGG	1 cut(s)	751
BseRI	GAGGAG	2 cut(s)	403, 1073
BseYI	CCCAGC	1 cut(s)	339
BshFI	GGCC	6 cut(s)	89, 268, 934, 959, 1017, 1127
BshNI	GGYRCC	1 cut(s)	1142
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	1055
BslI	CCNNNNNNNGG	7 cut(s)	184, 345, 390, 884, 1060, 1061, 1134
BsmAI	GTCTC	2 cut(s)	525, 612
BsnI	GGCC	6 cut(s)	89, 268, 934, 959, 1017, 1127
Bsp1286I	GDGCHC	3 cut(s)	179, 576, 770
Bsp143I	GATC	4 cut(s)	229, 475, 481, 874
BspACI	CCGC	2 cut(s)	86, 1018
BspANI	GGCC	6 cut(s)	89, 268, 934, 959, 1017, 1127
BspCNI	CTCAG	6 cut(s)	25, 226, 405, 437, 622, 782
BspLI	GGNNCC	4 cut(s)	573, 876, 1128, 1144
BspMAI	CTGCAG	1 cut(s)	475
BspMI	ACCTGC	2 cut(s)	229, 661
BspPI	GGATC	3 cut(s)	470, 869, 882
BspT107I	GGYRCC	1 cut(s)	1142
BsrDI	GCAATG	2 cut(s)	807, 916
BsrI	ACTGG	1 cut(s)	751
BssMI	GATC	4 cut(s)	229, 475, 481, 874
BssNAI	GTATAC	1 cut(s)	860
Bst1107I	GTATAC	1 cut(s)	860
Bst2UI	CCWGG	1 cut(s)	1227
Bst4CI	ACNGT	4 cut(s)	143, 200, 791, 965
BstC8I	GCNNGC	4 cut(s)	156, 421, 510, 811
BstDEI	CTNAG	6 cut(s)	12, 213, 413, 424, 609, 769
BstF5I	GGATG	3 cut(s)	232, 903, 1018
BstHHI	GCGC	1 cut(s)	809
BstKTI	GATC	4 cut(s)	232, 478, 484, 877
BstMAI	GTCTC	2 cut(s)	525, 612
BstMBI	GATC	4 cut(s)	229, 475, 481, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 740, 806, 965
BstNI	CCWGG	1 cut(s)	1227
BstNSI	RCATGY	2 cut(s)	353, 512
BstSCI	CCNGG	2 cut(s)	1053, 1225
BstSFI	CTRYAG	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	2 cut(s)	475, 874
BstYI	RGATCY	2 cut(s)	475, 874
BstZ17I	GTATAC	1 cut(s)	860
BsuRI	GGCC	6 cut(s)	89, 268, 934, 959, 1017, 1127
BtsCI	GGATG	3 cut(s)	232, 903, 1018
BtsI	GCAGTG	2 cut(s)	54, 1048
BtsIMutI	CAGTG	5 cut(s)	54, 744, 796, 970, 1048
BveI	ACCTGC	2 cut(s)	229, 661
Cac8I	GCNNGC	4 cut(s)	156, 421, 510, 811
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	1 cut(s)	809
Cfr13I	GGNCC	2 cut(s)	1126, 1223
CsiI	ACCWGGT	1 cut(s)	1225
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	4 cut(s)	350, 509, 973, 1248
DdeI	CTNAG	6 cut(s)	12, 213, 413, 424, 609, 769
DpnI	GATC	4 cut(s)	231, 477, 483, 876
DpnII	GATC	4 cut(s)	229, 475, 481, 874
EaeI	YGGCCR	3 cut(s)	87, 957, 1015
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	179, 576
Eco32I	GATATC	1 cut(s)	853
Eco47I	GGWCC	1 cut(s)	1223
Eco57I	CTGAAG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	1225
EcoRV	GATATC	1 cut(s)	853
EcoT22I	ATGCAT	1 cut(s)	736
EcoT38I	GRGCYC	2 cut(s)	179, 576
FaeI	CATG	4 cut(s)	353, 512, 976, 1251
FatI	CATG	4 cut(s)	349, 508, 972, 1247
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	87, 1018
FokI	GGATG	3 cut(s)	219, 910, 1025
FriOI	GRGCYC	2 cut(s)	179, 576
Fsp4HI	GCNGC	2 cut(s)	87, 1018
FspBI	CTAG	3 cut(s)	33, 44, 726
GlaI	GCGC	1 cut(s)	808
GluI	GCNGC	2 cut(s)	87, 1018
GsaI	CCCAGC	1 cut(s)	343
HaeIII	GGCC	6 cut(s)	89, 268, 934, 959, 1017, 1127
HapII	CCGG	1 cut(s)	1055
HhaI	GCGC	1 cut(s)	809
Hin1II	CATG	4 cut(s)	353, 512, 976, 1251
Hin6I	GCGC	1 cut(s)	807
HinP1I	GCGC	1 cut(s)	807
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	1055
HphI	GGTGA	4 cut(s)	650, 704, 1001, 1141
Hpy166II	GTNNAC	2 cut(s)	205, 860
Hpy188I	TCNGA	5 cut(s)	129, 261, 414, 1012, 1179
Hpy188III	TCNNGA	5 cut(s)	108, 172, 479, 868, 1087
Hpy8I	GTNNAC	2 cut(s)	205, 860
HpyAV	CCTTC	5 cut(s)	278, 442, 865, 945, 1156
HpyCH4III	ACNGT	4 cut(s)	143, 200, 791, 965
HpyCH4V	TGCA	4 cut(s)	473, 512, 734, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 740, 806, 965
HpyF3I	CTNAG	6 cut(s)	12, 213, 413, 424, 609, 769
Hsp92II	CATG	4 cut(s)	353, 512, 976, 1251
HspAI	GCGC	1 cut(s)	807
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	229, 475, 481, 874
LmnI	GCTCC	2 cut(s)	545, 571
LweI	GCATC	5 cut(s)	177, 353, 721, 822, 888
MabI	ACCWGGT	1 cut(s)	1225
MaeI	CTAG	3 cut(s)	33, 44, 726
MaeIII	GTNAC	2 cut(s)	692, 1202
MalI	GATC	4 cut(s)	231, 477, 483, 876
MboI	GATC	4 cut(s)	229, 475, 481, 874
MboII	GAAGA	4 cut(s)	383, 409, 457, 653
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	2 cut(s)	475, 874
MhlI	GDGCHC	3 cut(s)	179, 576, 770
MluCI	AATT	4 cut(s)	255, 513, 1000, 1240
MmeI	TCCRAC	1 cut(s)	990
Mph1103I	ATGCAT	1 cut(s)	736
MslI	CAYNNNNRTG	3 cut(s)	354, 383, 507
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	1055
MspR9I	CCNGG	2 cut(s)	1055, 1227
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	1227
MwoI	GCNNNNNNNGC	4 cut(s)	174, 740, 806, 965
NciI	CCSGG	1 cut(s)	1055
NdeII	GATC	4 cut(s)	229, 475, 481, 874
NlaIII	CATG	4 cut(s)	353, 512, 976, 1251
NlaIV	GGNNCC	4 cut(s)	573, 876, 1128, 1144
NmuCI	GTSAC	2 cut(s)	692, 1202
NsiI	ATGCAT	1 cut(s)	736
NspI	RCATGY	2 cut(s)	353, 512
PaeI	GCATGC	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	1053
PkrI	GCNGC	2 cut(s)	88, 1019
Psp6I	CCWGG	1 cut(s)	1225
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	1225
PspN4I	GGNNCC	4 cut(s)	573, 876, 1128, 1144
PspPI	GGNCC	2 cut(s)	1126, 1223
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	475, 874
PvuII	CAGCTG	1 cut(s)	343
RseI	CAYNNNNRTG	3 cut(s)	354, 383, 507
SatI	GCNGC	2 cut(s)	87, 1018
Sau3AI	GATC	4 cut(s)	229, 475, 481, 874
Sau96I	GGNCC	2 cut(s)	1126, 1223
ScrFI	CCNGG	2 cut(s)	1055, 1227
SduI	GDGCHC	3 cut(s)	179, 576, 770
SexAI	ACCWGGT	1 cut(s)	1225
SfaNI	GCATC	5 cut(s)	177, 353, 721, 822, 888
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	1223
SmiMI	CAYNNNNRTG	3 cut(s)	354, 383, 507
SmlI	CTYRAG	1 cut(s)	1121
SmoI	CTYRAG	1 cut(s)	1121
SpeI	ACTAGT	1 cut(s)	725
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	4 cut(s)	255, 513, 1000, 1240
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	86, 1018
SspMI	CTAG	3 cut(s)	33, 44, 726
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	1053, 1225
TaaI	ACNGT	4 cut(s)	143, 200, 791, 965
TaqI	TCGA	2 cut(s)	320, 827
TasI	AATT	4 cut(s)	255, 513, 1000, 1240
TauI	GCSGC	2 cut(s)	89, 1020
TfiI	GAWTC	1 cut(s)	580
TscAI	CASTG	5 cut(s)	54, 751, 796, 970, 1048
TseFI	GTSAC	2 cut(s)	692, 1202
Tsp45I	GTSAC	2 cut(s)	692, 1202
TspDTI	ATGAA	2 cut(s)	58, 93
TspGWI	ACGGA	2 cut(s)	457, 1251
TspRI	CASTG	5 cut(s)	54, 751, 796, 970, 1048
VpaK11BI	GGWCC	1 cut(s)	1223
XapI	RAATTY	2 cut(s)	255, 1000
XceI	RCATGY	2 cut(s)	353, 512
XmiI	GTMKAC	1 cut(s)	859
XspI	CTAG	3 cut(s)	33, 44, 726
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.