Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004991

Physical Location & Seq

Genomic Coordinates Reverse (-)

37960522 .. 37965209

Gene Structure 4688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45750.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGTTCTGCTCAGTTTAGCAGAGGGAGGTCTAGGGTAGCTCTACCAGTGCTGGTTTGCTTATGGGGGTTGTTGTTCATCTCTCTATGCTGTGAGGCCAGATTGACTGCTTCATCAAAACAGAAGCTTGAGGTCCAGAAGCACCTCAACCGTTTGAACAAGCCTGCTGTGAAAAGCATCAAGAGCCCGGATGGTGATATAATAGACTGTGTTCACATCTCTCAGCAACCTGCTTTTGATCACCCTTTCCTCAAAGACCACAAAATTCAGATGAGGCCTAACTACCACCCAGAAGGCTTGTTTCAAGAAAACAAAGTAGCTGAAAAACCGAAAGAAAAGCCAAACACCCAGCTGTGGCATGTGAATGGTAGATGCCCTGAAGATACCATACCCGTGAGGAGGACGAAGAAAGATGATATTCTCAGAGCAAGCTCAGTCAAAAGATATGGGAGGAAGAAGCAGAAAACCATTCCAAAATCTGCAGATCCTGATCTTGTCAATGAGAGTGGTCATCAGCATGCAATTGCCTATGTAAATGGAGACAAGTATTATGGAGCAAAAGCAACCATCAATGTCTGGGAGCCCAAGATTCAACAGCCTAATGAGTTCAGCTTGTCTCAGCTTTGGATATTAGGAGGGTCTTTTGGTGAAGACCTGAACAGCATTGAAGCTGGTTGGCAGGTCAGCCCAGACCTCTATGGTGACAACAACACCAGACTGTTTACCTATTGGACTAGTGATGCATATCAAGCCACTGGTTGCTACAACCTTCTGTGCTCAGGGTTTATTCAGATCAACAGTGAAATAGCAATGGGTGCAAGCATCTCTCCTGTGTCAAGCTTCCGGACTTCCCAATATGATATCAGTATACTTGTGTGGAAGGATCCAAAGGAGGGGCATTGGTGGATGCAGTTTGGCAATGACTATGTGTTGGGATATTGGCCTTCTTTCCTGTTCTCCTACTTGGCCGACAGTGCTTCCATGATTGAGTGGGGAGGTGAGGTTGTAAATTCAGAGTCGGACGGCCGGCACACCTCAACTCAAATGGGCAGTGGTCGTTTCCCAGAGGAGGGTTTTGGAAAATCAAGTTATTTCAGGAACATTCAAGTTGTTGATAGCTCCAATAATCTCAAAGCCCCCAAAGGGTTAGGCACCTTCACTGAGCAGTCAAATTGCTATGATGTTCAGACAGGAAGTAATGGGGATTGGGGTCACTACTTTTACTATGGAGGACCAGGTAGAAACTCAAATTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

420

Amino Acids

47.13

Weight (kDa)

7.98

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	1 - 87	2.4e-25	Neprosin activation peptide
Neprosin	PF03080	111 - 322	1.8e-86	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55360 AT3G13510 AT5G56530 AT5G56530
fragaria_vesca	FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750 FvH4_3g45750
malus_domestica	MD03G1003500.v1.1 MD11G1003400.v1.1
prunus_persica	Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1 Prupe.6G003200_v2.0.a1
pyrus_communis	pycom03g00350 pycom11g00300
rosa_chinensis	RchiOBHm_Chr5g0083821
rosa_laevigata	RLG00000037054
rosa_multiflora	Rmu_sc0024007.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000770
rosa_rugosa	Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300 Rorug05G0486300
rosa_samantha	Rh5AG539300 Rh5CG586500 Rh5DG573000
rosa_wichuraiana	Rw5G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	238, 670
AccB1I	GGYRCC	1 cut(s)	1151
AccI	GTMKAC	1 cut(s)	868
AccIII	TCCGGA	1 cut(s)	843
AclWI	GGATC	3 cut(s)	479, 878, 891
AcoI	YGGCCR	2 cut(s)	966, 1024
AcsI	RAATTY	2 cut(s)	264, 1009
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	6 cut(s)	354, 399, 893, 1069, 1070, 1143
AgsI	TTSAA	5 cut(s)	157, 305, 593, 668, 1106
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	1234
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	2 cut(s)	534, 621
AlwI	GGATC	3 cut(s)	479, 878, 891
AlwNI	CAGNNNCTG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	843
AoxI	GGCC	5 cut(s)	96, 275, 941, 966, 1024
ApoI	RAATTY	2 cut(s)	264, 1009
AspS9I	GGNCC	2 cut(s)	133, 1232
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	5 cut(s)	206, 233, 659, 713, 1010
AvaII	GGWCC	2 cut(s)	133, 1232
BamHI	GGATCC	1 cut(s)	883
BanI	GGYRCC	1 cut(s)	1151
BanII	GRGCYC	2 cut(s)	188, 585
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	779
BccI	CCATC	2 cut(s)	185, 575
BceAI	ACGGC	1 cut(s)	1039
BciT130I	CCWGG	1 cut(s)	1236
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	534, 621
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	2 cut(s)	33, 735
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	2 cut(s)	238, 670
Bme1390I	CCNGG	2 cut(s)	188, 1236
Bme18I	GGWCC	2 cut(s)	133, 1232
BmgT120I	GGNCC	2 cut(s)	133, 1232
BmiI	GGNNCC	3 cut(s)	582, 885, 1153
BmrFI	CCNGG	2 cut(s)	188, 1236
BmsI	GCATC	5 cut(s)	186, 362, 730, 831, 897
BpiI	GAAGAC	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	778
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	188
BsaBI	GATNNNNATC	2 cut(s)	489, 744
BsaWI	WCCGGW	1 cut(s)	843
BsaXI	ACNNNNNCTCC	2 cut(s)	987, 1017
Bsc4I	CCNNNNNNNGG	6 cut(s)	354, 399, 893, 1069, 1070, 1143
Bse118I	RCCGGY	1 cut(s)	1026
Bse1I	ACTGG	2 cut(s)	47, 760
Bse3DI	GCAATG	2 cut(s)	816, 925
Bse8I	GATNNNNATC	2 cut(s)	489, 744
BseAI	TCCGGA	1 cut(s)	843
BseBI	CCWGG	1 cut(s)	1236
BseGI	GGATG	2 cut(s)	196, 912
BseJI	GATNNNNATC	2 cut(s)	489, 744
BseLI	CCNNNNNNNGG	6 cut(s)	354, 399, 893, 1069, 1070, 1143
BseMI	GCAATG	2 cut(s)	816, 925
BseMII	CTCAG	7 cut(s)	26, 236, 436, 447, 632, 792, 1152
BseNI	ACTGG	2 cut(s)	47, 760
BseRI	GAGGAG	2 cut(s)	412, 1082
BseX3I	CGGCCG	1 cut(s)	1024
BseYI	CCCAGC	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	1027
BshFI	GGCC	5 cut(s)	98, 277, 943, 968, 1026
BshNI	GGYRCC	1 cut(s)	1151
BsiEI	CGRYCG	1 cut(s)	1027
BsiHKAI	GWGCWC	1 cut(s)	779
BsiSI	CCGG	3 cut(s)	188, 844, 1027
BslI	CCNNNNNNNGG	6 cut(s)	354, 399, 893, 1069, 1070, 1143
BsmAI	GTCTC	2 cut(s)	534, 621
BsnI	GGCC	5 cut(s)	98, 277, 943, 968, 1026
Bsp1286I	GDGCHC	3 cut(s)	188, 585, 779
Bsp13I	TCCGGA	1 cut(s)	843
Bsp143I	GATC	5 cut(s)	238, 484, 490, 792, 883
BspANI	GGCC	5 cut(s)	98, 277, 943, 968, 1026
BspCNI	CTCAG	7 cut(s)	25, 235, 435, 446, 631, 791, 1153
BspEI	TCCGGA	1 cut(s)	843
BspLI	GGNNCC	3 cut(s)	582, 885, 1153
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	2 cut(s)	238, 670
BspPI	GGATC	3 cut(s)	479, 878, 891
BspT107I	GGYRCC	1 cut(s)	1151
BsrDI	GCAATG	2 cut(s)	816, 925
BsrFI	RCCGGY	1 cut(s)	1026
BsrI	ACTGG	2 cut(s)	47, 760
BssAI	RCCGGY	1 cut(s)	1026
BssMI	GATC	5 cut(s)	238, 484, 490, 792, 883
BssNAI	GTATAC	1 cut(s)	869
Bst1107I	GTATAC	1 cut(s)	869
Bst2UI	CCWGG	1 cut(s)	1236
Bst4CI	ACNGT	5 cut(s)	152, 209, 720, 800, 974
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstC8I	GCNNGC	5 cut(s)	165, 430, 519, 820, 1028
BstDEI	CTNAG	7 cut(s)	12, 222, 422, 433, 618, 778, 1161
BstF5I	GGATG	2 cut(s)	196, 912
BstKTI	GATC	5 cut(s)	241, 487, 493, 795, 886
BstMAI	GTCTC	2 cut(s)	534, 621
BstMBI	GATC	5 cut(s)	238, 484, 490, 792, 883
BstMCI	CGRYCG	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 749, 815, 974
BstNI	CCWGG	1 cut(s)	1236
BstNSI	RCATGY	2 cut(s)	362, 521
BstSCI	CCNGG	2 cut(s)	186, 1234
BstSFI	CTRYAG	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	2 cut(s)	484, 883
BstYI	RGATCY	2 cut(s)	484, 883
BstZ17I	GTATAC	1 cut(s)	869
BstZI	CGGCCG	1 cut(s)	1024
BsuRI	GGCC	5 cut(s)	98, 277, 943, 968, 1026
BtsCI	GGATG	2 cut(s)	196, 912
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	6 cut(s)	54, 753, 805, 979, 1057, 1158
BveI	ACCTGC	2 cut(s)	238, 670
Cac8I	GCNNGC	5 cut(s)	165, 430, 519, 820, 1028
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	1026
Cfr13I	GGNCC	2 cut(s)	133, 1232
CsiI	ACCWGGT	1 cut(s)	1234
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	4 cut(s)	359, 518, 982, 1257
DdeI	CTNAG	7 cut(s)	12, 222, 422, 433, 618, 778, 1161
DpnI	GATC	5 cut(s)	240, 486, 492, 794, 885
DpnII	GATC	5 cut(s)	238, 484, 490, 792, 883
EaeI	YGGCCR	2 cut(s)	966, 1024
EagI	CGGCCG	1 cut(s)	1024
EclXI	CGGCCG	1 cut(s)	1024
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	188, 585
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	2 cut(s)	133, 1232
Eco52I	CGGCCG	1 cut(s)	1024
Eco57I	CTGAAG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	1234
EcoRV	GATATC	1 cut(s)	862
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	2 cut(s)	188, 585
FaeI	CATG	4 cut(s)	362, 521, 985, 1260
FatI	CATG	4 cut(s)	358, 517, 981, 1256
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	868
FokI	GGATG	2 cut(s)	203, 919
FriOI	GRGCYC	2 cut(s)	188, 585
FspBI	CTAG	2 cut(s)	33, 735
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	5 cut(s)	98, 277, 943, 968, 1026
HapII	CCGG	3 cut(s)	188, 844, 1027
Hin1II	CATG	4 cut(s)	362, 521, 985, 1260
HindIII	AAGCTT	2 cut(s)	125, 838
HinfI	GANTC	2 cut(s)	589, 1016
HpaII	CCGG	3 cut(s)	188, 844, 1027
HphI	GGTGA	5 cut(s)	206, 233, 659, 713, 1010
Hpy166II	GTNNAC	3 cut(s)	214, 723, 869
Hpy188I	TCNGA	6 cut(s)	270, 425, 792, 1015, 1021, 1188
Hpy188III	TCNNGA	6 cut(s)	136, 181, 305, 488, 844, 1096
Hpy8I	GTNNAC	3 cut(s)	214, 723, 869
HpyAV	CCTTC	5 cut(s)	287, 779, 874, 954, 1165
HpyCH4III	ACNGT	5 cut(s)	152, 209, 720, 800, 974
HpyCH4V	TGCA	5 cut(s)	482, 521, 743, 818, 910
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 749, 815, 974
HpyF3I	CTNAG	7 cut(s)	12, 222, 422, 433, 618, 778, 1161
Hsp92II	CATG	4 cut(s)	362, 521, 985, 1260
Kpn2I	TCCGGA	1 cut(s)	843
KroI	GCCGGC	1 cut(s)	1026
KroNI	GCCGGC	1 cut(s)	1028
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	238, 484, 490, 792, 883
LmnI	GCTCC	3 cut(s)	554, 580, 1124
LweI	GCATC	5 cut(s)	186, 362, 730, 831, 897
MabI	ACCWGGT	1 cut(s)	1234
MaeI	CTAG	2 cut(s)	33, 735
MaeIII	GTNAC	2 cut(s)	701, 1211
MalI	GATC	5 cut(s)	240, 486, 492, 794, 885
MboI	GATC	5 cut(s)	238, 484, 490, 792, 883
MboII	GAAGA	4 cut(s)	392, 418, 466, 662
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	484, 883
MhlI	GDGCHC	3 cut(s)	188, 585, 779
MluCI	AATT	5 cut(s)	264, 522, 1009, 1171, 1249
MlyI	GAGTC	1 cut(s)	1025
MmeI	TCCRAC	1 cut(s)	999
Mph1103I	ATGCAT	1 cut(s)	745
MroI	TCCGGA	1 cut(s)	843
MroNI	GCCGGC	1 cut(s)	1026
MslI	CAYNNNNRTG	3 cut(s)	363, 392, 516
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	3 cut(s)	188, 844, 1027
MspR9I	CCNGG	2 cut(s)	188, 1236
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	1236
MwoI	GCNNNNNNNGC	4 cut(s)	183, 749, 815, 974
NaeI	GCCGGC	1 cut(s)	1028
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	5 cut(s)	238, 484, 490, 792, 883
NgoMIV	GCCGGC	1 cut(s)	1026
NlaIII	CATG	4 cut(s)	362, 521, 985, 1260
NlaIV	GGNNCC	3 cut(s)	582, 885, 1153
NmuCI	GTSAC	2 cut(s)	701, 1211
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	2 cut(s)	362, 521
PaeI	GCATGC	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	277
PdiI	GCCGGC	1 cut(s)	1028
PfeI	GAWTC	1 cut(s)	589
PleI	GAGTC	1 cut(s)	1024
PpsI	GAGTC	1 cut(s)	1024
Psp6I	CCWGG	1 cut(s)	1234
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	1234
PspN4I	GGNNCC	3 cut(s)	582, 885, 1153
PspPI	GGNCC	2 cut(s)	133, 1232
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	484, 883
PvuII	CAGCTG	1 cut(s)	352
RseI	CAYNNNNRTG	3 cut(s)	363, 392, 516
Sau3AI	GATC	5 cut(s)	238, 484, 490, 792, 883
Sau96I	GGNCC	2 cut(s)	133, 1232
SchI	GAGTC	1 cut(s)	1025
ScrFI	CCNGG	2 cut(s)	188, 1236
SduI	GDGCHC	3 cut(s)	188, 585, 779
SexAI	ACCWGGT	1 cut(s)	1234
SfaNI	GCATC	5 cut(s)	186, 362, 730, 831, 897
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	2 cut(s)	133, 1232
SmiMI	CAYNNNNRTG	3 cut(s)	363, 392, 516
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	734
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	5 cut(s)	264, 522, 1009, 1171, 1249
SseBI	AGGCCT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	33, 735
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	186, 1234
TaaI	ACNGT	5 cut(s)	152, 209, 720, 800, 974
TasI	AATT	5 cut(s)	264, 522, 1009, 1171, 1249
TfiI	GAWTC	1 cut(s)	589
TscAI	CASTG	6 cut(s)	54, 760, 805, 979, 1057, 1165
TseFI	GTSAC	2 cut(s)	701, 1211
Tsp45I	GTSAC	2 cut(s)	701, 1211
TspDTI	ATGAA	2 cut(s)	67, 102
TspRI	CASTG	6 cut(s)	54, 760, 805, 979, 1057, 1165
VpaK11BI	GGWCC	2 cut(s)	133, 1232
XapI	RAATTY	2 cut(s)	264, 1009
XceI	RCATGY	2 cut(s)	362, 521
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	2 cut(s)	33, 735
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.