AT1G55490
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20715563 .. 20719261
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55490.3

Sequence Viewer

Length: 1803 bp
ATGGCGTCAACTTTCACTGCCACATCTTCTATTGGTTCAATGGTTGCTCCGAATGGTCACAAATCTGATAAGAAACTTATCAGCAAGTTGTCTTCAAGCTCATTTGGAAGGAGACAAAGTGTGTGTCCTAGACCCAGAAGATCCAGTTCTGCAATTGTGTGCGCAGCAAAGGAATTACATTTCAACAAAGATGGGACTACCATTAGGAGACTTCAAGCTGGTGTCAACAAGCTCGCAGATCTTGTTGGTGTTACACTTGGACCCAAAGGACGAAATGTTGTTCTTGAGAGCAAGTATGGATCACCACGAATTGTTAATGATGGTGTGACTGTTGCAAGAGAGGTTGAGTTGGAAGACCCGGTTGAGAACATTGGCGCTAAGCTTGTGAGGCAAGCGGCTGCCAAAACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATCGCTGAGGGTGTCAAGGTGGTAGCTGCTGGTGCAAACCCTGTTTTGATCACCAGAGGTATTGAGAAGACAGCAAAGGCTTTGGTTACCGAGCTCAAGAAAATGTCTAAGGAGGTTGAAGACAGTGAACTTGCAGATGTTGCAGCTGTTAGTGCGGGTAACAACGACGAAATTGGAAATATGATTGCTGAAGCAATGAGCAAAGTGGGCAGGAAAGGTGTGGTGACCCTTGAGGAGGGTAAAAGTGCCGAGAACAACCTCTACGTCGTAGAAGGAATGCAATTTGACCGTGGTTATATCTCTCCTTACTTTGTGACAGACAGCGAGAAAATGTCCGTCGAGTTCGACAATTGCAAGTTACTTCTCGTTGACAAGAAAATTACCAATGCAAGGGATCTTGTTGGTGTTTTGGAGGATGCAATTAGAGGCGGATACCCAATATTAATTATTGCTGAAGACATTGAACAAGAAGCTTTAGCGACTCTTGTTGTAAACAAGCTTAGAGGTACACTGAAGATAGCAGCTCTCAGAGCTCCAGGGTTTGGAGAGCGCAAGAGCCAATACCTTGATGATATTGCCATTCTAACTGGAGCAACTGTGATCCGTGAGGAAGTTGGTCTTTCACTTGACAAAGCTGGAAAAGAGGTTCTTGGTAATGCTTCAAAGGTTGTCCTCACAAAGGAGACCTCGACCATAGTGGGTGATGGAAGCACACAGGATGCAGTGAAAAAGCGTGTTACACAGATTAAAAATCTTATTGAGCAAGCGGAGCAAGATTACGAGAAGGAGAAACTCAATGAGAGAATTGCAAAGCTCTCTGGTGGAGTTGCTGTGATTCAGGTTGGAGCACAAACTGAGACAGAACTCAAAGAGAAGAAGTTGAGAGTTGAAGATGCTCTTAATGCAACAAAGGCCGCTGTCGAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTGCTTCGTCTTGCTTCCAAGGTTGATGCCATTAAAGCCACGCTTGATAATGATGAAGAAAAGGTTGGAGCGGATATAGTTAAAAGAGCACTAAGTTACCCCCTAAAACTAATCGCCAAGAATGCTGGTGTTAATGGAAGTGTAGTTAGCGAGAAGGTGCTTTCCAACGATAACGTGAAATTCGGTTACAATGCTGCAACCGGCAAGTACGAGGATTTGATGGCTGCAGGAATCATCGATCCAACAAAGGTTGTGAGATGTTGCTTGGAACACGCAGCTTCGGTTGCAAAGACTTTCTTGATGTCGGACTGCGTTGTTGTTGAGATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAGGATATGGATACTAA

Protein Analysis

600

Amino Acids

63.81

Weight (kDa)

6.21

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 78 - 580 7.5e-81 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccBSI CCGCTC 1 cut(s) 1487
AciI CCGC 6 cut(s) 395, 617, 891, 1229, 1377, 1487
AclWI GGATC 5 cut(s) 135, 307, 864, 1057, 1649
AcsI RAATTY 1 cut(s) 1595
AcuI CTGAAG 3 cut(s) 672, 936, 995
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 430, 970, 1625
AfiI CCNNNNNNNGG 4 cut(s) 697, 852, 1004, 1141
AgsI TTSAA 8 cut(s) 39, 96, 184, 215, 581, 926, 1125, 1352
AjnI CCWGG 1 cut(s) 997
AjuI GAANNNNNNNTTGG 2 cut(s) 1464, 1496
AloI GAACNNNNNNTCC 2 cut(s) 1092, 1124
Alw21I GWGCWC 4 cut(s) 558, 997, 1312, 1507
Alw26I GTCTC 4 cut(s) 106, 202, 1139, 1313
AlwI GGATC 5 cut(s) 135, 307, 864, 1057, 1649
AoxI GGCC 1 cut(s) 1374
ApeKI GCWGC 8 cut(s) 164, 398, 488, 605, 983, 1610, 1640, 1691
ApoI RAATTY 1 cut(s) 1595
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AseI ATTAAT 1 cut(s) 905
Asp700I GAANNNNTTC 1 cut(s) 1758
AspLEI GCGC 3 cut(s) 164, 377, 1014
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 5 cut(s) 294, 434, 505, 697, 1175
AvaII GGWCC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 558, 997
BbsI GAAGAC 5 cut(s) 84, 360, 536, 588, 924
Bbv12I GWGCWC 4 cut(s) 558, 997, 1312, 1507
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 8 cut(s) 176, 385, 475, 617, 995, 1597, 1627, 1703
BccI CCATC 4 cut(s) 185, 314, 1160, 1630
BciT130I CCWGG 1 cut(s) 999
BciVI GTATCC 2 cut(s) 887, 1790
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 4 cut(s) 106, 202, 1139, 1313
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 1641
BfoI RGCGCY 1 cut(s) 378
BfuI GTATCC 2 cut(s) 887, 1790
BglII AGATCT 1 cut(s) 238
BlpI GCTNAGC 1 cut(s) 378
Bme1390I CCNGG 2 cut(s) 359, 999
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 262, 1749
BmrFI CCNGG 2 cut(s) 359, 999
BmsI GCATC 4 cut(s) 868, 1171, 1345, 1432
BpiI GAAGAC 5 cut(s) 84, 360, 536, 588, 924
BpmI CTGGAG 2 cut(s) 981, 1071
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 3 cut(s) 305, 542, 713
BpuMI CCSGG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 1653
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1139
BsaJI CCNNGG 3 cut(s) 751, 998, 1434
BsaXI ACNNNNNCTCC 6 cut(s) 103, 133, 1044, 1074, 1278, 1308
Bsc4I CCNNNNNNNGG 4 cut(s) 697, 852, 1004, 1141
Bse118I RCCGGY 1 cut(s) 1616
Bse1I ACTGG 3 cut(s) 144, 1054, 1757
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 1 cut(s) 999
BseCI ATCGAT 1 cut(s) 1653
BseDI CCNNGG 3 cut(s) 751, 998, 1434
BseGI GGATG 2 cut(s) 883, 1186
BseLI CCNNNNNNNGG 4 cut(s) 697, 852, 1004, 1141
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 4 cut(s) 459, 1003, 1308, 1800
BseNI ACTGG 3 cut(s) 144, 1054, 1757
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 8 cut(s) 176, 385, 475, 617, 995, 1597, 1627, 1703
BshFI GGCC 1 cut(s) 1376
BshVI ATCGAT 1 cut(s) 1653
BsiHKAI GWGCWC 4 cut(s) 558, 997, 1312, 1507
BsiSI CCGG 2 cut(s) 359, 1617
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 4 cut(s) 697, 852, 1004, 1141
BsmAI GTCTC 4 cut(s) 106, 202, 1139, 1313
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 2 cut(s) 744, 1543
BsnI GGCC 1 cut(s) 1376
Bso31I GGTCTC 1 cut(s) 1139
Bsp1286I GDGCHC 4 cut(s) 558, 997, 1312, 1507
Bsp143I GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 6 cut(s) 395, 617, 891, 1229, 1377, 1487
BspANI GGCC 1 cut(s) 1376
BspCNI CTCAG 4 cut(s) 460, 1002, 1309, 1799
BspDI ATCGAT 1 cut(s) 1653
BspLI GGNNCC 2 cut(s) 262, 1749
BspMAI CTGCAG 1 cut(s) 1645
BspPI GGATC 5 cut(s) 135, 307, 864, 1057, 1649
BspTNI GGTCTC 1 cut(s) 1139
BsrBI CCGCTC 1 cut(s) 1487
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 1 cut(s) 1616
BsrI ACTGG 3 cut(s) 144, 1054, 1757
BssAI RCCGGY 1 cut(s) 1616
BssECI CCNNGG 3 cut(s) 751, 998, 1434
BssMI GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 1434
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 5 cut(s) 331, 428, 587, 752, 1060
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 234, 393, 1227
BstDEI CTNAG 8 cut(s) 378, 468, 570, 962, 989, 1317, 1508, 1786
BstDSI CCRYGG 1 cut(s) 751
BstEII GGTNACC 2 cut(s) 547, 685
BstENI CCTNNNNNAGG 2 cut(s) 695, 1139
BstF5I GGATG 2 cut(s) 883, 1186
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 3 cut(s) 164, 377, 1014
BstKTI GATC 8 cut(s) 143, 241, 302, 513, 859, 1065, 1657, 1743
BstMAI GTCTC 4 cut(s) 106, 202, 1139, 1313
BstMBI GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
BstNI CCWGG 1 cut(s) 999
BstPI GGTNACC 2 cut(s) 547, 685
BstSCI CCNGG 2 cut(s) 357, 997
BstSFI CTRYAG 1 cut(s) 1641
BstV1I GCAGC 8 cut(s) 176, 385, 475, 617, 995, 1597, 1627, 1703
BstV2I GAAGAC 5 cut(s) 84, 360, 536, 588, 924
BstX2I RGATCY 3 cut(s) 140, 238, 856
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 3 cut(s) 140, 238, 856
Bsu15I ATCGAT 1 cut(s) 1653
BsuI GTATCC 2 cut(s) 887, 1790
BsuRI GGCC 1 cut(s) 1376
BsuTUI ATCGAT 1 cut(s) 1653
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 2 cut(s) 883, 1186
BtsI GCAGTG 2 cut(s) 15, 1191
BtsIMutI CAGTG 4 cut(s) 15, 592, 971, 1191
Cac8I GCNNGC 3 cut(s) 234, 393, 1227
CfoI GCGC 3 cut(s) 164, 377, 1014
Cfr10I RCCGGY 1 cut(s) 1616
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 1653
Csp6I GTAC 3 cut(s) 429, 969, 1624
CviQI GTAC 3 cut(s) 429, 969, 1624
DdeI CTNAG 8 cut(s) 378, 468, 570, 962, 989, 1317, 1508, 1786
DpnI GATC 8 cut(s) 142, 240, 301, 512, 858, 1064, 1656, 1742
DpnII GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
EciI GGCGGA 1 cut(s) 906
Ecl136II GAGCTC 2 cut(s) 556, 995
Eco130I CCWWGG 1 cut(s) 1434
Eco24I GRGCYC 2 cut(s) 558, 997
Eco31I GGTCTC 1 cut(s) 1139
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 2 cut(s) 556, 995
Eco57I CTGAAG 3 cut(s) 672, 936, 995
Eco91I GGTNACC 2 cut(s) 547, 685
EcoICRI GAGCTC 2 cut(s) 556, 995
EcoNI CCTNNNNNAGG 2 cut(s) 695, 1139
EcoO65I GGTNACC 2 cut(s) 547, 685
EcoRII CCWGG 1 cut(s) 997
EcoT14I CCWWGG 1 cut(s) 1434
EcoT38I GRGCYC 2 cut(s) 558, 997
ErhI CCWWGG 1 cut(s) 1434
FaiI YATR 6 cut(s) 297, 644, 759, 1157, 1493, 1794
FaqI GGGAC 1 cut(s) 208
FauI CCCGC 1 cut(s) 610
FbaI TGATCA 1 cut(s) 510
FokI GGATG 2 cut(s) 890, 1193
FriOI GRGCYC 2 cut(s) 558, 997
FspBI CTAG 1 cut(s) 129
FspI TGCGCA 1 cut(s) 163
GlaI GCGC 3 cut(s) 163, 376, 1013
GsuI CTGGAG 2 cut(s) 981, 1071
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 1 cut(s) 1376
HapII CCGG 2 cut(s) 359, 1617
HhaI GCGC 3 cut(s) 164, 377, 1014
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 3 cut(s) 162, 375, 1012
HinP1I GCGC 3 cut(s) 162, 375, 1012
HincII GTYRAC 3 cut(s) 9, 226, 832
HindII GTYRAC 3 cut(s) 9, 226, 832
HindIII AAGCTT 3 cut(s) 380, 933, 959
HinfI GANTC 3 cut(s) 943, 1297, 1647
HpaII CCGG 2 cut(s) 359, 1617
HphI GGTGA 5 cut(s) 294, 434, 505, 697, 1175
Hpy166II GTNNAC 6 cut(s) 9, 226, 590, 832, 955, 971
Hpy188I TCNGA 4 cut(s) 51, 67, 992, 1723
Hpy188III TCNNGA 4 cut(s) 284, 559, 1714, 1788
Hpy8I GTNNAC 6 cut(s) 9, 226, 590, 832, 955, 971
Hpy99I CGWCG 4 cut(s) 632, 731, 803, 1769
HpyAV CCTTC 5 cut(s) 102, 728, 1240, 1382, 1564
HpyCH4III ACNGT 5 cut(s) 331, 428, 587, 752, 1060
HpyCH4IV ACGT 2 cut(s) 726, 1590
HpyF3I CTNAG 8 cut(s) 378, 468, 570, 962, 989, 1317, 1508, 1786
HpySE526I ACGT 2 cut(s) 726, 1590
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 3 cut(s) 162, 375, 1012
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
LmnI GCTCC 6 cut(s) 52, 1000, 1052, 1231, 1307, 1484
Lsp1109I GCAGC 8 cut(s) 176, 385, 475, 617, 995, 1597, 1627, 1703
LweI GCATC 4 cut(s) 868, 1171, 1345, 1432
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 726, 1590
MalI GATC 8 cut(s) 142, 240, 301, 512, 858, 1064, 1656, 1742
MbiI CCGCTC 1 cut(s) 1487
MboI GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
MfeI CAATTG 2 cut(s) 153, 811
MflI RGATCY 3 cut(s) 140, 238, 856
MhlI GDGCHC 4 cut(s) 558, 997, 1312, 1507
MlyI GAGTC 1 cut(s) 937
MmeI TCCRAC 6 cut(s) 330, 1285, 1462, 1605, 1682, 1701
MroXI GAANNNNTTC 1 cut(s) 1758
MseI TTAA 7 cut(s) 315, 905, 1209, 1362, 1449, 1497, 1548
MspA1I CMGCKG 2 cut(s) 608, 1379
MspI CCGG 2 cut(s) 359, 1617
MspR9I CCNGG 2 cut(s) 359, 999
MunI CAATTG 2 cut(s) 153, 811
Mva1269I GAATGC 2 cut(s) 744, 1543
MvaI CCWGG 1 cut(s) 999
NciI CCSGG 1 cut(s) 359
NdeII GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
NlaIV GGNNCC 2 cut(s) 262, 1749
NmeAIII GCCGAG 1 cut(s) 736
NmuCI GTSAC 5 cut(s) 56, 325, 422, 685, 775
NsbI TGCGCA 1 cut(s) 163
PctI GAATGC 2 cut(s) 744, 1543
PdmI GAANNNNTTC 1 cut(s) 1758
PfeI GAWTC 2 cut(s) 1297, 1647
PflMI CCANNNNNTGG 1 cut(s) 1004
PleI GAGTC 1 cut(s) 937
PpsI GAGTC 1 cut(s) 937
PshBI ATTAAT 1 cut(s) 905
Psp124BI GAGCTC 2 cut(s) 558, 997
Psp6I CCWGG 1 cut(s) 997
PspEI GGTNACC 2 cut(s) 547, 685
PspGI CCWGG 1 cut(s) 997
PspN4I GGNNCC 2 cut(s) 262, 1749
PspPI GGNCC 1 cut(s) 260
PsrI GAACNNNNNNTAC 2 cut(s) 707, 739
PstI CTGCAG 1 cut(s) 1645
PsuI RGATCY 3 cut(s) 140, 238, 856
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 3 cut(s) 430, 970, 1625
RsaNI GTAC 3 cut(s) 429, 969, 1624
SacI GAGCTC 2 cut(s) 558, 997
SaqAI TTAA 7 cut(s) 315, 905, 1209, 1362, 1449, 1497, 1548
Sau3AI GATC 8 cut(s) 140, 238, 299, 510, 856, 1062, 1654, 1740
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 937
ScrFI CCNGG 2 cut(s) 359, 999
SduI GDGCHC 4 cut(s) 558, 997, 1312, 1507
SfaNI GCATC 4 cut(s) 868, 1171, 1345, 1432
SfcI CTRYAG 1 cut(s) 1641
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 3 cut(s) 284, 557, 692
SmoI CTYRAG 3 cut(s) 284, 557, 692
SsiI CCGC 6 cut(s) 395, 617, 891, 1229, 1377, 1487
SspI AATATT 1 cut(s) 903
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 2 cut(s) 558, 997
StyD4I CCNGG 2 cut(s) 357, 997
StyI CCWWGG 1 cut(s) 1434
TaaI ACNGT 5 cut(s) 331, 428, 587, 752, 1060
TaiI ACGT 2 cut(s) 729, 1593
TaqI TCGA 5 cut(s) 801, 807, 1151, 1383, 1653
TauI GCSGC 2 cut(s) 398, 1379
TfiI GAWTC 2 cut(s) 1297, 1647
Tru1I TTAA 7 cut(s) 315, 905, 1209, 1362, 1449, 1497, 1548
Tru9I TTAA 7 cut(s) 315, 905, 1209, 1362, 1449, 1497, 1548
TscAI CASTG 4 cut(s) 22, 592, 978, 1191
TseFI GTSAC 5 cut(s) 56, 325, 422, 685, 775
TseI GCWGC 8 cut(s) 164, 398, 488, 605, 983, 1610, 1640, 1691
Tsp45I GTSAC 5 cut(s) 56, 325, 422, 685, 775
TspDTI ATGAA 1 cut(s) 1485
TspGWI ACGGA 2 cut(s) 787, 1055
TspRI CASTG 4 cut(s) 22, 592, 978, 1191
Van91I CCANNNNNTGG 1 cut(s) 1004
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 905
XagI CCTNNNNNAGG 2 cut(s) 695, 1139
XapI RAATTY 1 cut(s) 1595
XmnI GAANNNNTTC 1 cut(s) 1758
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.