Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005260

Physical Location & Seq

Genomic Coordinates Forward (+)

236558 .. 240795

Gene Structure 4238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1002700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGACTTCAGTTGGTTCCTTGGCTGCTCCTAGCGGCCGTGTCATTGACAGGAAATTCGACAACTTGTCGTCTCATGCTTCATTCTCTTCATTCTCCGTCTCTAGAAGGCAGAATGTGGCTTTGAGGAGGACACGGTCTCCCAGGATCTGTGCCATGGCCAAGGAATTGCACTTCAACAAGGATGGCTCTGCCATCAAGAAACTACAGACTGGTGTCAACAAGCTCGCCGACCTTGTTGGGGTTACACTTGGTCCAAAGGGAAGGAATGTCGTTCTAGAGAGCAAGTATGGCTCCCCCAAAATTGTTAACGATGGTGTAACCGTTGCAAAAGAGGTTGAGTTGGAGGACCCTGTTGAGAACATTGGAGCTAAGTTAGTGAGACAGGCAGCTGCCAAGACTAATGACCTAGCTGGTGATGGTACAACCACTTCTGTTGTTCTTGCACAAGGTCTTATTGCTGAAGGTGTCAAGGTGGTTGCAGCTGGGGCAAACCCTGTTTTAATCACACGTGGCATTGAAAAGACCACCAGAGCTCTAGTAAATGAGCTTAAGTTGATCTCTAAAGAGGTTGAAGACAGTGAGCTGGCAGATGTGGCAGCTGTTAGTGCAGGAAACAACTATGAAGTAGGAAACATGATTGCCGAAGCTTTGAGCAAGGTGGGTAGGAAAGGTGTGGTGACCCTTGAAGAGGGAAAGAGCGCTGAGAACAGCCTGTACGTTGTTGAAGGAATGCAATTCGATCGTGGTTATATCTCACCTTACTTTGTCACTGACAGCGAGAAAATGGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTTGATAAAAAGATTACAAATGCAAGGGACCTTATTAACATTTTGGAGGAAGCTATTAGAGGAGGATACCCAGTTGTAATCATTGCAGAAGACATTGAACAAGAAGCTCTTGCAACTCTTGTTGTAAACAAGCTAAGAGGAGCTCTTAAGATTGCTGCCCTTAAAGCTCCAGGGTTTGGTGATCGCAAGAGCCAGTACCTTGATGATATTGCTATTCTAACTGGAGGAACTGTTATCAGAGAGGAGGTAGGACTCACATTAGAGAATGCTGGAAAGGAGGTCCTTGGCCATGCTTCGAAAGTGGTTCTTACAAAGGATAGCTCCACAATTGTTGGTGATGGAAGTACCCAGGAAGCAGTTAACAAGCGAGTTGCCCAAATTAAGAACCTCATTGAGGCGGCAGAGCAGGACTATGAAAGAGAAAAGCTGAATGAAAGGATTGCAAAACTATCTGGTGGTGTTGCTGTTATACAGGTTGGAGCACAAACTGAGACAGAGCTGAAAGAAAAGAAGCTGAGGGTCGAAGATGCTCTGAATGCAACGAAGGCAGCTGTTGAGGAAGGTATTGTTGTTGGAGGTGGATGCACACTTCTGAGGTTAGCATCGAAGGTTGACACAATCAAAGATACTCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATCGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATTGCCAAGAATGCTGGTGTAAATGGAAGTGTTGTCAGTGAGAAGGTGCTTTCAAATGACAATCCCAAGTATGGATACAATGCTGCCACTGGAAACTATGAAGATTTAATGGCTGCTGGAATCATTGATCCAACCAAGGTGGTGAGATGTTGCCTGGAGCATGCATCCTCTGTTGCGAAAACTTTCTTAATGTCAGACTGTGTAGTTGTCGAGATTAAAGAGCCAGAACCAGCAGTGCCCGCCGGCAACCCCATGGACAACTCAGGCTACGGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

599

Amino Acids

63.7

Weight (kDa)

5.6

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	75 - 577	3.9e-84	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT3G13470 AT5G56500 AT5G56500
fragaria_vesca	FvH4_3g45800 FvH4_3g45800 FvH4_3g45800 FvH4_3g45800
malus_domestica	MD03G1002900.v1.1 MD11G1002700.v1.1
prunus_persica	Prupe.6G002500_v2.0.a1 Prupe.6G002500_v2.0.a1
pyrus_communis	pycom03g00280 pycom11g00250
rosa_chinensis	RchiOBHm_Chr5g0083881
rosa_laevigata	RLG00000037061
rosa_multiflora	Rmu_sc0001287.1_g000043
rosa_roxburghii	Rroxscaffold_1G00000710
rosa_rugosa	Rorug05G0487100 Rorug05G0487200
rosa_samantha	Rh5AG540000 Rh5BG565200 Rh5CG587000 Rh5DG573600
rosa_wichuraiana	Rw5G050210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	995
AciI	CCGC	3 cut(s)	33, 1217, 1758
AclWI	GGATC	2 cut(s)	152, 1640
AcoI	YGGCCR	3 cut(s)	34, 156, 1105
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	480
AcvI	CACGTG	1 cut(s)	509
AfaI	GTAC	4 cut(s)	421, 716, 1016, 1165
AfeI	AGCGCT	1 cut(s)	700
AfiI	CCNNNNNNNGG	5 cut(s)	238, 688, 995, 1213, 1589
AflII	CTTAAG	2 cut(s)	548, 965
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	8 cut(s)	175, 518, 572, 686, 725, 794, 917, 1572
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	4 cut(s)	140, 988, 1167, 1671
AjuI	GAANNNNNNNTTGG	2 cut(s)	1455, 1487
Alw21I	GWGCWC	4 cut(s)	535, 964, 1303, 1498
Alw26I	GTCTC	5 cut(s)	75, 103, 141, 373, 1304
AlwI	GGATC	2 cut(s)	152, 1640
AlwNI	CAGNNNCTG	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	700
AoxI	GGCC	3 cut(s)	34, 156, 1105
ApeKI	GCWGC	9 cut(s)	23, 386, 389, 479, 596, 974, 1367, 1601, 1631
ApoI	RAATTY	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AseI	ATTAAT	1 cut(s)	1517
Asp700I	GAANNNNTTC	1 cut(s)	1700
AspLEI	GCGC	1 cut(s)	701
AspS9I	GGNCC	4 cut(s)	251, 346, 847, 1099
AsuHPI	GGTGA	6 cut(s)	425, 688, 747, 1010, 1166, 1672
AsuII	TTCGAA	1 cut(s)	1115
AvaII	GGWCC	4 cut(s)	251, 346, 847, 1099
BaeGI	GKGCMC	1 cut(s)	1758
BalI	TGGCCA	2 cut(s)	158, 1107
BanII	GRGCYC	3 cut(s)	535, 964, 1498
BarI	GAAGNNNNNNTAC	2 cut(s)	412, 444
BbrPI	CACGTG	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	579, 915
Bbv12I	GWGCWC	4 cut(s)	535, 964, 1303, 1498
BbvCI	CCTCAGC	1 cut(s)	1334
BbvI	GCAGC	9 cut(s)	10, 376, 398, 491, 608, 961, 1379, 1588, 1618
BccI	CCATC	5 cut(s)	176, 200, 305, 410, 1151
BceAI	ACGGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	4 cut(s)	142, 990, 1169, 1673
BciVI	GTATCC	2 cut(s)	878, 1586
BcoDI	GTCTC	5 cut(s)	75, 103, 141, 373, 1304
BfaI	CTAG	5 cut(s)	30, 102, 275, 407, 536
BfmI	CTRYAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	702
BfrI	CTTAAG	2 cut(s)	548, 965
BfuI	GTATCC	2 cut(s)	878, 1586
Bme1390I	CCNGG	4 cut(s)	142, 990, 1169, 1673
Bme18I	GGWCC	4 cut(s)	251, 346, 847, 1099
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	4 cut(s)	251, 346, 847, 1099
BmiI	GGNNCC	4 cut(s)	16, 292, 348, 848
BmrFI	CCNGG	4 cut(s)	142, 990, 1169, 1673
BmrI	ACTGGG	1 cut(s)	884
BmsI	GCATC	4 cut(s)	1336, 1391, 1430, 1691
BmuI	ACTGGG	1 cut(s)	884
BoxI	GACNNNNGTC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	579, 915
BpmI	CTGGAG	3 cut(s)	972, 1062, 1694
Bpu10I	CCTNAGC	1 cut(s)	1334
Bpu14I	TTCGAA	1 cut(s)	1115
BsaAI	YACGTR	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	9 cut(s)	18, 140, 153, 159, 989, 1102, 1167, 1653, 1770
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 1035, 1065
Bsc4I	CCNNNNNNNGG	5 cut(s)	238, 688, 995, 1213, 1589
Bse118I	RCCGGY	1 cut(s)	1760
Bse1I	ACTGG	5 cut(s)	214, 890, 1012, 1045, 1612
Bse3DI	GCAATG	1 cut(s)	900
BseBI	CCWGG	4 cut(s)	142, 990, 1169, 1673
BseDI	CCNNGG	9 cut(s)	18, 140, 153, 159, 989, 1102, 1167, 1653, 1770
BseGI	GGATG	3 cut(s)	187, 1406, 1682
BseLI	CCNNNNNNNGG	5 cut(s)	238, 688, 995, 1213, 1589
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	5 cut(s)	693, 1299, 1325, 1403, 1794
BseNI	ACTGG	5 cut(s)	214, 890, 1012, 1045, 1612
BseRI	GAGGAG	4 cut(s)	139, 894, 972, 1076
BseSI	GKGCMC	1 cut(s)	1758
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	9 cut(s)	10, 376, 398, 491, 608, 961, 1379, 1588, 1618
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	627
Bsh1285I	CGRYCG	2 cut(s)	37, 742
BshFI	GGCC	3 cut(s)	36, 158, 1107
BsiEI	CGRYCG	2 cut(s)	37, 742
BsiHKAI	GWGCWC	4 cut(s)	535, 964, 1303, 1498
BsiSI	CCGG	1 cut(s)	1761
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	5 cut(s)	238, 688, 995, 1213, 1589
BsmAI	GTCTC	5 cut(s)	75, 103, 141, 373, 1304
BsmBI	CGTCTC	2 cut(s)	75, 103
BsmFI	GGGAC	1 cut(s)	860
BsmI	GAATGC	4 cut(s)	735, 1090, 1360, 1534
BsnI	GGCC	3 cut(s)	36, 158, 1107
Bso31I	GGTCTC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	1115
Bsp1286I	GDGCHC	5 cut(s)	535, 964, 1303, 1498, 1758
Bsp143I	GATC	5 cut(s)	144, 555, 739, 1000, 1645
Bsp19I	CCATGG	2 cut(s)	153, 1770
BspACI	CCGC	3 cut(s)	33, 1217, 1758
BspANI	GGCC	3 cut(s)	36, 158, 1107
BspCNI	CTCAG	5 cut(s)	694, 1300, 1326, 1404, 1793
BspLI	GGNNCC	4 cut(s)	16, 292, 348, 848
BspPI	GGATC	2 cut(s)	152, 1640
BspT104I	TTCGAA	1 cut(s)	1115
BspTI	CTTAAG	2 cut(s)	548, 965
BspTNI	GGTCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	900
BsrFI	RCCGGY	1 cut(s)	1760
BsrI	ACTGG	5 cut(s)	214, 890, 1012, 1045, 1612
BssAI	RCCGGY	1 cut(s)	1760
BssECI	CCNNGG	9 cut(s)	18, 140, 153, 159, 989, 1102, 1167, 1653, 1770
BssMI	GATC	5 cut(s)	144, 555, 739, 1000, 1645
BssT1I	CCWWGG	6 cut(s)	18, 153, 159, 1102, 1653, 1770
Bst2UI	CCWGG	4 cut(s)	142, 990, 1169, 1673
Bst4CI	ACNGT	6 cut(s)	135, 322, 578, 1051, 1718, 1790
Bst6I	CTCTTC	2 cut(s)	91, 681
BstAFI	CTTAAG	2 cut(s)	548, 965
BstBAI	YACGTR	1 cut(s)	509
BstBI	TTCGAA	1 cut(s)	1115
BstC8I	GCNNGC	5 cut(s)	225, 585, 1680, 1758, 1762
BstDEI	CTNAG	8 cut(s)	369, 702, 953, 1308, 1334, 1412, 1499, 1780
BstDSI	CCRYGG	2 cut(s)	153, 1770
BstEII	GGTNACC	1 cut(s)	676
BstENI	CCTNNNNNAGG	2 cut(s)	686, 1211
BstF5I	GGATG	3 cut(s)	187, 1406, 1682
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	701
BstKTI	GATC	5 cut(s)	147, 558, 742, 1003, 1648
BstMAI	GTCTC	5 cut(s)	75, 103, 141, 373, 1304
BstMBI	GATC	5 cut(s)	144, 555, 739, 1000, 1645
BstMCI	CGRYCG	2 cut(s)	37, 742
BstMWI	GCNNNNNNNGC	9 cut(s)	288, 485, 593, 605, 983, 1355, 1364, 1529, 1757
BstNI	CCWGG	4 cut(s)	142, 990, 1169, 1673
BstNSI	RCATGY	1 cut(s)	1682
BstPAI	GACNNNNGTC	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	676
BstSCI	CCNGG	4 cut(s)	140, 988, 1167, 1671
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	1758
BstV1I	GCAGC	9 cut(s)	10, 376, 398, 491, 608, 961, 1379, 1588, 1618
BstV2I	GAAGAC	2 cut(s)	579, 915
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BstZI	CGGCCG	1 cut(s)	34
BsuI	GTATCC	2 cut(s)	878, 1586
BsuRI	GGCC	3 cut(s)	36, 158, 1107
BtgI	CCRYGG	2 cut(s)	153, 1770
BtsCI	GGATG	3 cut(s)	187, 1406, 1682
BtsI	GCAGTG	1 cut(s)	1758
BtsIMutI	CAGTG	5 cut(s)	583, 768, 1561, 1605, 1758
Cac8I	GCNNGC	5 cut(s)	225, 585, 1680, 1758, 1762
CaiI	CAGNNNCTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	701
Cfr10I	RCCGGY	1 cut(s)	1760
Cfr13I	GGNCC	4 cut(s)	251, 346, 847, 1099
Csp6I	GTAC	4 cut(s)	420, 715, 1015, 1164
CspCI	CAANNNNNGTGG	6 cut(s)	415, 450, 1132, 1167, 1638, 1673
CviAII	CATG	6 cut(s)	74, 154, 634, 1109, 1679, 1771
CviQI	GTAC	4 cut(s)	420, 715, 1015, 1164
DdeI	CTNAG	8 cut(s)	369, 702, 953, 1308, 1334, 1412, 1499, 1780
DpnI	GATC	5 cut(s)	146, 557, 741, 1002, 1647
DpnII	GATC	5 cut(s)	144, 555, 739, 1000, 1645
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	3 cut(s)	34, 156, 1105
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	91, 681
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	2 cut(s)	91, 681
Ecl136II	GAGCTC	3 cut(s)	533, 962, 1496
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	6 cut(s)	18, 153, 159, 1102, 1653, 1770
Eco24I	GRGCYC	3 cut(s)	535, 964, 1498
Eco31I	GGTCTC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	1483
Eco47I	GGWCC	4 cut(s)	251, 346, 847, 1099
Eco47III	AGCGCT	1 cut(s)	700
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	3 cut(s)	533, 962, 1496
Eco57I	CTGAAG	1 cut(s)	480
Eco72I	CACGTG	1 cut(s)	509
Eco91I	GGTNACC	1 cut(s)	676
EcoICRI	GAGCTC	3 cut(s)	533, 962, 1496
EcoNI	CCTNNNNNAGG	2 cut(s)	686, 1211
EcoO109I	RGGNCCY	3 cut(s)	346, 847, 1099
EcoO65I	GGTNACC	1 cut(s)	676
EcoRII	CCWGG	4 cut(s)	140, 988, 1167, 1671
EcoRV	GATATC	1 cut(s)	1483
EcoT14I	CCWWGG	6 cut(s)	18, 153, 159, 1102, 1653, 1770
EcoT22I	ATGCAT	1 cut(s)	1684
EcoT38I	GRGCYC	3 cut(s)	535, 964, 1498
ErhI	CCWWGG	6 cut(s)	18, 153, 159, 1102, 1653, 1770
Esp3I	CGTCTC	2 cut(s)	75, 103
FaeI	CATG	6 cut(s)	77, 157, 637, 1112, 1682, 1774
FalI	AAGNNNNNCTT	6 cut(s)	912, 944, 1110, 1142, 1434, 1466
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	6 cut(s)	73, 153, 633, 1108, 1678, 1770
FauI	CCCGC	1 cut(s)	1765
FokI	GGATG	3 cut(s)	194, 1413, 1669
FriOI	GRGCYC	3 cut(s)	535, 964, 1498
FspBI	CTAG	5 cut(s)	30, 102, 275, 407, 536
GlaI	GCGC	1 cut(s)	700
GsaI	CCCAGC	1 cut(s)	486
GsuI	CTGGAG	3 cut(s)	972, 1062, 1694
HaeII	RGCGCY	1 cut(s)	702
HaeIII	GGCC	3 cut(s)	36, 158, 1107
HapII	CCGG	1 cut(s)	1761
HhaI	GCGC	1 cut(s)	701
Hin1II	CATG	6 cut(s)	77, 157, 637, 1112, 1682, 1774
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HincII	GTYRAC	4 cut(s)	217, 307, 1180, 1432
HindII	GTYRAC	4 cut(s)	217, 307, 1180, 1432
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	2 cut(s)	1071, 1638
HpaI	GTTAAC	2 cut(s)	307, 1180
HpaII	CCGG	1 cut(s)	1761
HphI	GGTGA	6 cut(s)	425, 688, 747, 1010, 1166, 1672
Hpy166II	GTNNAC	5 cut(s)	217, 307, 946, 1180, 1432
Hpy188I	TCNGA	5 cut(s)	1058, 1353, 1413, 1512, 1714
Hpy188III	TCNNGA	5 cut(s)	102, 196, 275, 1451, 1729
Hpy8I	GTNNAC	5 cut(s)	217, 307, 946, 1180, 1432
HpyAV	CCTTC	8 cut(s)	99, 255, 455, 719, 1357, 1373, 1420, 1555
HpyCH4III	ACNGT	6 cut(s)	135, 322, 578, 1051, 1718, 1790
HpyCH4IV	ACGT	2 cut(s)	508, 717
HpyF10VI	GCNNNNNNNGC	9 cut(s)	288, 485, 593, 605, 983, 1355, 1364, 1529, 1757
HpyF3I	CTNAG	8 cut(s)	369, 702, 953, 1308, 1334, 1412, 1499, 1780
HpySE526I	ACGT	2 cut(s)	508, 717
Hsp92II	CATG	6 cut(s)	77, 157, 637, 1112, 1682, 1774
HspAI	GCGC	1 cut(s)	699
KroI	GCCGGC	1 cut(s)	1760
KroNI	GCCGGC	1 cut(s)	1762
KspAI	GTTAAC	2 cut(s)	307, 1180
Kzo9I	GATC	5 cut(s)	144, 555, 739, 1000, 1645
LmnI	GCTCC	9 cut(s)	31, 296, 365, 959, 991, 1145, 1298, 1475, 1675
Lsp1109I	GCAGC	9 cut(s)	10, 376, 398, 491, 608, 961, 1379, 1588, 1618
LweI	GCATC	4 cut(s)	1336, 1391, 1430, 1691
MaeI	CTAG	5 cut(s)	30, 102, 275, 407, 536
MaeII	ACGT	2 cut(s)	508, 717
MaeIII	GTNAC	6 cut(s)	241, 316, 676, 766, 1502, 1790
MalI	GATC	5 cut(s)	146, 557, 741, 1002, 1647
MboI	GATC	5 cut(s)	144, 555, 739, 1000, 1645
MboII	GAAGA	7 cut(s)	78, 584, 698, 920, 1355, 1475, 1631
MfeI	CAATTG	1 cut(s)	1146
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	5 cut(s)	535, 964, 1303, 1498, 1758
MlsI	TGGCCA	2 cut(s)	158, 1107
MluCI	AATT	8 cut(s)	53, 164, 300, 734, 1146, 1197, 1514, 1518
MluNI	TGGCCA	2 cut(s)	158, 1107
MlyI	GAGTC	1 cut(s)	1065
MmeI	TCCRAC	5 cut(s)	321, 1276, 1372, 1453, 1673
Mox20I	TGGCCA	2 cut(s)	158, 1107
Mph1103I	ATGCAT	1 cut(s)	1684
MroNI	GCCGGC	1 cut(s)	1760
MroXI	GAANNNNTTC	1 cut(s)	1700
MscI	TGGCCA	2 cut(s)	158, 1107
Msp20I	TGGCCA	2 cut(s)	158, 1107
MspA1I	CMGCKG	4 cut(s)	389, 482, 599, 1370
MspCI	CTTAAG	2 cut(s)	548, 965
MspI	CCGG	1 cut(s)	1761
MspR9I	CCNGG	4 cut(s)	142, 990, 1169, 1673
MunI	CAATTG	1 cut(s)	1146
Mva1269I	GAATGC	4 cut(s)	735, 1090, 1360, 1534
MvaI	CCWGG	4 cut(s)	142, 990, 1169, 1673
MwoI	GCNNNNNNNGC	9 cut(s)	288, 485, 593, 605, 983, 1355, 1364, 1529, 1757
NaeI	GCCGGC	1 cut(s)	1762
NcoI	CCATGG	2 cut(s)	153, 1770
NdeII	GATC	5 cut(s)	144, 555, 739, 1000, 1645
NgoMIV	GCCGGC	1 cut(s)	1760
NlaIII	CATG	6 cut(s)	77, 157, 637, 1112, 1682, 1774
NlaIV	GGNNCC	4 cut(s)	16, 292, 348, 848
NmuCI	GTSAC	2 cut(s)	676, 766
NsiI	ATGCAT	1 cut(s)	1684
NspI	RCATGY	1 cut(s)	1682
NspV	TTCGAA	1 cut(s)	1115
PaeI	GCATGC	1 cut(s)	1682
PctI	GAATGC	4 cut(s)	735, 1090, 1360, 1534
PdiI	GCCGGC	1 cut(s)	1762
PdmI	GAANNNNTTC	1 cut(s)	1700
PfeI	GAWTC	1 cut(s)	1638
PflFI	GACNNNGTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	995
Ple19I	CGATCG	1 cut(s)	742
PleI	GAGTC	1 cut(s)	1065
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	1065
Ppu21I	YACGTR	1 cut(s)	509
PpuMI	RGGWCCY	3 cut(s)	346, 847, 1099
PshAI	GACNNNNGTC	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	1517
Psp124BI	GAGCTC	3 cut(s)	535, 964, 1498
Psp5II	RGGWCCY	3 cut(s)	346, 847, 1099
Psp6I	CCWGG	4 cut(s)	140, 988, 1167, 1671
PspCI	CACGTG	1 cut(s)	509
PspEI	GGTNACC	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	4 cut(s)	140, 988, 1167, 1671
PspN4I	GGNNCC	4 cut(s)	16, 292, 348, 848
PspPI	GGNCC	4 cut(s)	251, 346, 847, 1099
PspPPI	RGGWCCY	3 cut(s)	346, 847, 1099
PsrI	GAACNNNNNNTAC	2 cut(s)	698, 730
PstNI	CAGNNNCTG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	133
PvuI	CGATCG	1 cut(s)	742
PvuII	CAGCTG	4 cut(s)	389, 482, 599, 1370
RsaI	GTAC	4 cut(s)	421, 716, 1016, 1165
RsaNI	GTAC	4 cut(s)	420, 715, 1015, 1164
SacI	GAGCTC	3 cut(s)	535, 964, 1498
Sau3AI	GATC	5 cut(s)	144, 555, 739, 1000, 1645
Sau96I	GGNCC	4 cut(s)	251, 346, 847, 1099
SchI	GAGTC	1 cut(s)	1065
ScrFI	CCNGG	4 cut(s)	142, 990, 1169, 1673
SduI	GDGCHC	5 cut(s)	535, 964, 1303, 1498, 1758
SfaNI	GCATC	4 cut(s)	1336, 1391, 1430, 1691
SfcI	CTRYAG	1 cut(s)	203
SfuI	TTCGAA	1 cut(s)	1115
SinI	GGWCC	4 cut(s)	251, 346, 847, 1099
SmlI	CTYRAG	2 cut(s)	548, 965
SmoI	CTYRAG	2 cut(s)	548, 965
SphI	GCATGC	1 cut(s)	1682
Sse9I	AATT	8 cut(s)	53, 164, 300, 734, 1146, 1197, 1514, 1518
SsiI	CCGC	3 cut(s)	33, 1217, 1758
SspMI	CTAG	5 cut(s)	30, 102, 275, 407, 536
SstI	GAGCTC	3 cut(s)	535, 964, 1498
StyD4I	CCNGG	4 cut(s)	140, 988, 1167, 1671
StyI	CCWWGG	6 cut(s)	18, 153, 159, 1102, 1653, 1770
TaaI	ACNGT	6 cut(s)	135, 322, 578, 1051, 1718, 1790
TaiI	ACGT	2 cut(s)	511, 720
TaqI	TCGA	6 cut(s)	57, 738, 1115, 1341, 1424, 1728
TasI	AATT	8 cut(s)	53, 164, 300, 734, 1146, 1197, 1514, 1518
TauI	GCSGC	2 cut(s)	36, 1220
TfiI	GAWTC	1 cut(s)	1638
TscAI	CASTG	5 cut(s)	583, 775, 1561, 1612, 1758
TseFI	GTSAC	2 cut(s)	676, 766
TseI	GCWGC	9 cut(s)	23, 386, 389, 479, 596, 974, 1367, 1601, 1631
Tsp45I	GTSAC	2 cut(s)	676, 766
TspDTI	ATGAA	7 cut(s)	69, 78, 636, 1248, 1266, 1476, 1632
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	5 cut(s)	583, 775, 1561, 1612, 1758
Tth111I	GACNNNGTC	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	995
Vha464I	CTTAAG	2 cut(s)	548, 965
VpaK11BI	GGWCC	4 cut(s)	251, 346, 847, 1099
VspI	ATTAAT	1 cut(s)	1517
XagI	CCTNNNNNAGG	2 cut(s)	686, 1211
XapI	RAATTY	1 cut(s)	53
XbaI	TCTAGA	2 cut(s)	101, 274
XceI	RCATGY	1 cut(s)	1682
XmnI	GAANNNNTTC	1 cut(s)	1700
XspI	CTAG	5 cut(s)	30, 102, 275, 407, 536
Zsp2I	ATGCAT	1 cut(s)	1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.