Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005260

Physical Location & Seq

Genomic Coordinates Forward (+)

214017 .. 217541

Gene Structure 3525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1002900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGCTAATTTGTTTCCATTCTGTGACTGGTGTCAACAAGCTCGCCGACCTTGTTGGGGTTACACTTGGTCCAAAGGGAAGGAATGTCGTTCTAGAGAGCAAGTATGGCTCCCCCAAAATTGTTAACGATGGTGTAACCGTCGCAAAAGAGGTTGAGTTGGAGGACCCTGTTGAGAATATTGGAGCTAAGTTAGTGAGACAGGCAGCTGCCAAGACTAATGACCTGGCTGGTGACGGTACAACCACTTCTGTTGTTCTTGCACAAGGTCTTATTGCTGAAGGTGTCAAGGTGGTTGCAGCTGGGGCAAACCCTGTTTTAATCACACGTGGCATTGAAAAGACCACCAGAGCTCTAGTAAATGAGCTTAAGTTGATCTCCAAAGAGGTTGAAGACAGTGAGCTGGCAGATGTTGCAGCTGTTAGTGCAGGAAACAATTACGAAGTAGGAAACATGATTGCTGAAGCTTTGAGCAAGGTGGGTAGGAAGGGTGTGGTGACCCTTGAAGAGGGAAAGAGCGCTGAGAACAGCCTGTATGTTGTTGAGGGAATGCAATTCGATCGTGGTTATATCTCACCTTACTTTGTCACTGACAGTGAGAAAATGGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTTGATAAAAAAATTACAAATGCAAGGGACCTTATTAACATTTTGGAGGATGCTATTAGAGGAGGATACCCAGTTGTAATCATTGCAGAAGACATTGAACAAGAAGCTCTTGCAACTCTTGTTGTAAACAAGCTAAGAGGAGCTCTTAAGATTGCTGCCCTTAAAGCTCCTGGGTTTGGTGATCGCAAGAGCCAGTACCTTGATGACATTGCTATTCTAACTGGAGGAACTGTCATCAGAGAGGAAGTAGGACTCACATTAGAGAATGTTGGAAAGGAGGTCCTAGGCCATGCATCGAAAGTGGTTCTTACAAAGGATACCTCCACAATTGTTGGTGATGGAAGTACTCAGGAAGCAGTTAACAAGCGAGTTGCCCAAATTAAGAACCTCATTGAGGCGGCCGAGCAGGACTATGAAAGAGAAAAGCTTAATGAAAGGATTGCAAAACTATCTGGTGGTGTTGCTGTTATACAGGTTGGAGCACAAACAGAGACAGAGCTGAAAGAAAAGAAACTGAGAGTTGAAGATGCTCTGAATGCAACAAAGGCAGCTGTTGAGGAAGGTATTGTTGTCGGAGGTGGATGCACACTTCTGAGGTTAGCATCAAAGGTTGACGCAATCAAAGATACTCTTGATAATGATGAAGAAAAGGTTGGAGCAGATATCGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATCGCCAAGAATGCTGGTGTAAATGGAAGTGTTGTCAGTGAGAAGGTGCTTTCGAGTGACAATCCGAAGTATGGATATAATGCTGCCACTGGAAACTATGAAGATTTAATGGCTGCTGGAATCATTGATCCAACCAAGGTGGTGAGATGTTGCCTAGAGCATGCATCCTCTGTTGCGAAAACTTTCTTAATGTCAGATTGTGTGGTTGTTGAGATTAAAGAGCCAGAACCTGCAGTGCCTGCCGGCAACCCCATGGACAACTCAGGCTACGGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

538

Amino Acids

57.0

Weight (kDa)

5.01

Isoelectric Point (pI)

22.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	14 - 516	2.7e-84	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT3G13470 AT5G56500 AT5G56500
fragaria_vesca	FvH4_3g45800 FvH4_3g45800 FvH4_3g45800 FvH4_3g45800
malus_domestica	MD03G1002900.v1.1 MD11G1002700.v1.1
prunus_persica	Prupe.6G002500_v2.0.a1 Prupe.6G002500_v2.0.a1
pyrus_communis	pycom03g00280 pycom11g00250
rosa_chinensis	RchiOBHm_Chr5g0083881
rosa_laevigata	RLG00000037061
rosa_multiflora	Rmu_sc0001287.1_g000043
rosa_roxburghii	Rroxscaffold_1G00000710
rosa_rugosa	Rorug05G0487100 Rorug05G0487200
rosa_samantha	Rh5AG540000 Rh5BG565200 Rh5CG587000 Rh5DG573600
rosa_wichuraiana	Rw5G050210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1573
AciI	CCGC	1 cut(s)	1034
AclWI	GGATC	1 cut(s)	1457
AcoI	YGGCCR	1 cut(s)	1035
AcuI	CTGAAG	2 cut(s)	297, 480
AcvI	CACGTG	1 cut(s)	326
AfaI	GTAC	3 cut(s)	238, 833, 982
AfeI	AGCGCT	1 cut(s)	517
AfiI	CCNNNNNNNGG	5 cut(s)	55, 505, 812, 1030, 1406
AflII	CTTAAG	2 cut(s)	365, 782
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	6 cut(s)	335, 389, 503, 611, 734, 1160
AjnI	CCWGG	2 cut(s)	222, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	1272, 1304
Alw21I	GWGCWC	4 cut(s)	352, 781, 1120, 1315
Alw26I	GTCTC	2 cut(s)	190, 1121
AlwI	GGATC	1 cut(s)	1457
AlwNI	CAGNNNCTG	2 cut(s)	1565, 1574
Aor51HI	AGCGCT	1 cut(s)	517
AoxI	GGCC	2 cut(s)	922, 1035
ApeKI	GCWGC	8 cut(s)	203, 206, 296, 413, 791, 1184, 1418, 1448
AseI	ATTAAT	1 cut(s)	1334
Asp700I	GAANNNNTTC	1 cut(s)	1517
AspA2I	CCTAGG	1 cut(s)	919
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	4 cut(s)	68, 163, 664, 916
AsuHPI	GGTGA	6 cut(s)	242, 505, 564, 827, 983, 1489
AvaII	GGWCC	4 cut(s)	68, 163, 664, 916
AvrII	CCTAGG	1 cut(s)	919
BanII	GRGCYC	3 cut(s)	352, 781, 1315
BarI	GAAGNNNNNNTAC	2 cut(s)	229, 261
BbrPI	CACGTG	1 cut(s)	326
BbsI	GAAGAC	2 cut(s)	396, 732
Bbv12I	GWGCWC	4 cut(s)	352, 781, 1120, 1315
BbvI	GCAGC	8 cut(s)	193, 215, 308, 425, 778, 1196, 1405, 1435
BccI	CCATC	2 cut(s)	122, 968
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	2 cut(s)	224, 807
BciVI	GTATCC	2 cut(s)	695, 946
BcoDI	GTCTC	2 cut(s)	190, 1121
BfaI	CTAG	4 cut(s)	92, 353, 920, 1490
BfmI	CTRYAG	1 cut(s)	1566
BfoI	RGCGCY	1 cut(s)	519
BfrI	CTTAAG	2 cut(s)	365, 782
BfuAI	ACCTGC	1 cut(s)	1573
BfuI	GTATCC	2 cut(s)	695, 946
BisI	GCNGC	9 cut(s)	204, 207, 297, 414, 792, 1035, 1185, 1419, 1449
BlnI	CCTAGG	1 cut(s)	919
BlsI	GCNGC	9 cut(s)	205, 208, 298, 415, 793, 1036, 1186, 1420, 1450
BmcAI	AGTACT	1 cut(s)	982
Bme1390I	CCNGG	2 cut(s)	224, 807
Bme18I	GGWCC	4 cut(s)	68, 163, 664, 916
BmgT120I	GGNCC	4 cut(s)	68, 163, 664, 916
BmiI	GGNNCC	3 cut(s)	109, 165, 665
BmrFI	CCNGG	2 cut(s)	224, 807
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	6 cut(s)	676, 938, 1153, 1208, 1247, 1508
BmuI	ACTGGG	1 cut(s)	701
BoxI	GACNNNNGTC	1 cut(s)	29
BpiI	GAAGAC	2 cut(s)	396, 732
BpmI	CTGGAG	1 cut(s)	879
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	4 cut(s)	806, 919, 1470, 1587
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 505, 812, 1030, 1406
Bse118I	RCCGGY	1 cut(s)	1577
Bse1I	ACTGG	5 cut(s)	31, 707, 829, 862, 1429
Bse3DI	GCAATG	2 cut(s)	717, 843
BseBI	CCWGG	2 cut(s)	224, 807
BseDI	CCNNGG	4 cut(s)	806, 919, 1470, 1587
BseGI	GGATG	3 cut(s)	691, 1223, 1499
BseLI	CCNNNNNNNGG	5 cut(s)	55, 505, 812, 1030, 1406
BseMI	GCAATG	2 cut(s)	717, 843
BseMII	CTCAG	5 cut(s)	510, 998, 1142, 1220, 1611
BseNI	ACTGG	5 cut(s)	31, 707, 829, 862, 1429
BseRI	GAGGAG	2 cut(s)	711, 789
BseX3I	CGGCCG	1 cut(s)	1035
BseXI	GCAGC	8 cut(s)	193, 215, 308, 425, 778, 1196, 1405, 1435
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	444
Bsh1285I	CGRYCG	2 cut(s)	559, 1038
BshFI	GGCC	2 cut(s)	924, 1037
BsiEI	CGRYCG	2 cut(s)	559, 1038
BsiHKAI	GWGCWC	4 cut(s)	352, 781, 1120, 1315
BsiSI	CCGG	1 cut(s)	1578
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	5 cut(s)	55, 505, 812, 1030, 1406
BsmAI	GTCTC	2 cut(s)	190, 1121
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	3 cut(s)	552, 1177, 1351
BsnI	GGCC	2 cut(s)	924, 1037
Bsp1286I	GDGCHC	4 cut(s)	352, 781, 1120, 1315
Bsp143I	GATC	4 cut(s)	372, 556, 817, 1462
Bsp19I	CCATGG	1 cut(s)	1587
BspACI	CCGC	1 cut(s)	1034
BspANI	GGCC	2 cut(s)	924, 1037
BspCNI	CTCAG	5 cut(s)	511, 997, 1143, 1221, 1610
BspLI	GGNNCC	3 cut(s)	109, 165, 665
BspMAI	CTGCAG	1 cut(s)	1570
BspMI	ACCTGC	1 cut(s)	1573
BspPI	GGATC	1 cut(s)	1457
BspTI	CTTAAG	2 cut(s)	365, 782
BsrDI	GCAATG	2 cut(s)	717, 843
BsrFI	RCCGGY	1 cut(s)	1577
BsrI	ACTGG	5 cut(s)	31, 707, 829, 862, 1429
BssAI	RCCGGY	1 cut(s)	1577
BssECI	CCNNGG	4 cut(s)	806, 919, 1470, 1587
BssMI	GATC	4 cut(s)	372, 556, 817, 1462
BssT1I	CCWWGG	3 cut(s)	919, 1470, 1587
Bst2UI	CCWGG	2 cut(s)	224, 807
Bst4CI	ACNGT	6 cut(s)	139, 236, 395, 593, 868, 1607
Bst6I	CTCTTC	1 cut(s)	498
BstAFI	CTTAAG	2 cut(s)	365, 782
BstAPI	GCANNNNNTGC	2 cut(s)	410, 1574
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	5 cut(s)	42, 402, 1497, 1575, 1579
BstDEI	CTNAG	8 cut(s)	186, 519, 770, 984, 1151, 1229, 1316, 1597
BstDSI	CCRYGG	1 cut(s)	1587
BstEII	GGTNACC	1 cut(s)	493
BstENI	CCTNNNNNAGG	2 cut(s)	503, 1028
BstF5I	GGATG	3 cut(s)	691, 1223, 1499
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	4 cut(s)	375, 559, 820, 1465
BstMAI	GTCTC	2 cut(s)	190, 1121
BstMBI	GATC	4 cut(s)	372, 556, 817, 1462
BstMCI	CGRYCG	2 cut(s)	559, 1038
BstMWI	GCNNNNNNNGC	9 cut(s)	105, 302, 410, 422, 800, 1172, 1181, 1346, 1574
BstNI	CCWGG	2 cut(s)	224, 807
BstNSI	RCATGY	1 cut(s)	1499
BstPAI	GACNNNNGTC	1 cut(s)	29
BstPI	GGTNACC	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	222, 805
BstSFI	CTRYAG	1 cut(s)	1566
BstV1I	GCAGC	8 cut(s)	193, 215, 308, 425, 778, 1196, 1405, 1435
BstV2I	GAAGAC	2 cut(s)	396, 732
BstZI	CGGCCG	1 cut(s)	1035
BsuI	GTATCC	2 cut(s)	695, 946
BsuRI	GGCC	2 cut(s)	924, 1037
BtgI	CCRYGG	1 cut(s)	1587
BtsCI	GGATG	3 cut(s)	691, 1223, 1499
BtsI	GCAGTG	1 cut(s)	1575
BtsIMutI	CAGTG	6 cut(s)	400, 585, 598, 1378, 1422, 1575
BveI	ACCTGC	1 cut(s)	1573
Cac8I	GCNNGC	5 cut(s)	42, 402, 1497, 1575, 1579
CaiI	CAGNNNCTG	2 cut(s)	1565, 1574
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	1577
Cfr13I	GGNCC	4 cut(s)	68, 163, 664, 916
CseI	GACGC	1 cut(s)	1259
Csp6I	GTAC	3 cut(s)	237, 832, 981
CspCI	CAANNNNNGTGG	6 cut(s)	232, 267, 949, 984, 1455, 1490
CviAII	CATG	4 cut(s)	451, 926, 1496, 1588
CviQI	GTAC	3 cut(s)	237, 832, 981
DdeI	CTNAG	8 cut(s)	186, 519, 770, 984, 1151, 1229, 1316, 1597
DpnI	GATC	4 cut(s)	374, 558, 819, 1464
DpnII	GATC	4 cut(s)	372, 556, 817, 1462
EaeI	YGGCCR	1 cut(s)	1035
EagI	CGGCCG	1 cut(s)	1035
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	3 cut(s)	350, 779, 1313
EclXI	CGGCCG	1 cut(s)	1035
Eco130I	CCWWGG	3 cut(s)	919, 1470, 1587
Eco24I	GRGCYC	3 cut(s)	352, 781, 1315
Eco32I	GATATC	1 cut(s)	1300
Eco47I	GGWCC	4 cut(s)	68, 163, 664, 916
Eco47III	AGCGCT	1 cut(s)	517
Eco52I	CGGCCG	1 cut(s)	1035
Eco53kI	GAGCTC	3 cut(s)	350, 779, 1313
Eco57I	CTGAAG	2 cut(s)	297, 480
Eco72I	CACGTG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	493
EcoICRI	GAGCTC	3 cut(s)	350, 779, 1313
EcoNI	CCTNNNNNAGG	2 cut(s)	503, 1028
EcoO109I	RGGNCCY	3 cut(s)	163, 664, 916
EcoO65I	GGTNACC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	222, 805
EcoRV	GATATC	1 cut(s)	1300
EcoT14I	CCWWGG	3 cut(s)	919, 1470, 1587
EcoT22I	ATGCAT	2 cut(s)	931, 1501
EcoT38I	GRGCYC	3 cut(s)	352, 781, 1315
ErhI	CCWWGG	3 cut(s)	919, 1470, 1587
FaeI	CATG	4 cut(s)	454, 929, 1499, 1591
FalI	AAGNNNNNCTT	6 cut(s)	729, 761, 927, 959, 1251, 1283
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	4 cut(s)	450, 925, 1495, 1587
Fnu4HI	GCNGC	9 cut(s)	204, 207, 297, 414, 792, 1035, 1185, 1419, 1449
FokI	GGATG	3 cut(s)	698, 1230, 1486
FriOI	GRGCYC	3 cut(s)	352, 781, 1315
Fsp4HI	GCNGC	9 cut(s)	204, 207, 297, 414, 792, 1035, 1185, 1419, 1449
FspBI	CTAG	4 cut(s)	92, 353, 920, 1490
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	9 cut(s)	204, 207, 297, 414, 792, 1035, 1185, 1419, 1449
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	924, 1037
HapII	CCGG	1 cut(s)	1578
HgaI	GACGC	1 cut(s)	1259
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	4 cut(s)	454, 929, 1499, 1591
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HincII	GTYRAC	4 cut(s)	34, 124, 997, 1249
HindII	GTYRAC	4 cut(s)	34, 124, 997, 1249
HindIII	AAGCTT	2 cut(s)	462, 1061
HinfI	GANTC	2 cut(s)	888, 1455
HpaI	GTTAAC	2 cut(s)	124, 997
HpaII	CCGG	1 cut(s)	1578
HphI	GGTGA	6 cut(s)	242, 505, 564, 827, 983, 1489
Hpy166II	GTNNAC	5 cut(s)	34, 124, 763, 997, 1249
Hpy188I	TCNGA	7 cut(s)	875, 1170, 1211, 1230, 1329, 1401, 1531
Hpy188III	TCNNGA	3 cut(s)	92, 986, 1268
Hpy8I	GTNNAC	5 cut(s)	34, 124, 763, 997, 1249
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	5 cut(s)	72, 272, 478, 1190, 1372
HpyCH4III	ACNGT	6 cut(s)	139, 236, 395, 593, 868, 1607
HpyCH4IV	ACGT	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	9 cut(s)	105, 302, 410, 422, 800, 1172, 1181, 1346, 1574
HpyF3I	CTNAG	8 cut(s)	186, 519, 770, 984, 1151, 1229, 1316, 1597
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	454, 929, 1499, 1591
HspAI	GCGC	1 cut(s)	516
KroI	GCCGGC	1 cut(s)	1577
KroNI	GCCGGC	1 cut(s)	1579
KspAI	GTTAAC	2 cut(s)	124, 997
Kzo9I	GATC	4 cut(s)	372, 556, 817, 1462
LmnI	GCTCC	6 cut(s)	113, 182, 776, 808, 1115, 1292
Lsp1109I	GCAGC	8 cut(s)	193, 215, 308, 425, 778, 1196, 1405, 1435
LweI	GCATC	6 cut(s)	676, 938, 1153, 1208, 1247, 1508
MaeI	CTAG	4 cut(s)	92, 353, 920, 1490
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	9 cut(s)	22, 58, 133, 230, 493, 583, 1319, 1391, 1607
MalI	GATC	4 cut(s)	374, 558, 819, 1464
MboI	GATC	4 cut(s)	372, 556, 817, 1462
MboII	GAAGA	6 cut(s)	401, 515, 737, 1172, 1292, 1448
MfeI	CAATTG	1 cut(s)	963
MhlI	GDGCHC	4 cut(s)	352, 781, 1120, 1315
MluCI	AATT	8 cut(s)	6, 117, 433, 551, 648, 963, 1014, 1331
MlyI	GAGTC	1 cut(s)	882
MmeI	TCCRAC	6 cut(s)	138, 886, 1093, 1189, 1270, 1490
Mph1103I	ATGCAT	2 cut(s)	931, 1501
MroNI	GCCGGC	1 cut(s)	1577
MroXI	GAANNNNTTC	1 cut(s)	1517
MspA1I	CMGCKG	4 cut(s)	206, 299, 416, 1187
MspCI	CTTAAG	2 cut(s)	365, 782
MspI	CCGG	1 cut(s)	1578
MspR9I	CCNGG	2 cut(s)	224, 807
MunI	CAATTG	1 cut(s)	963
Mva1269I	GAATGC	3 cut(s)	552, 1177, 1351
MvaI	CCWGG	2 cut(s)	224, 807
MwoI	GCNNNNNNNGC	9 cut(s)	105, 302, 410, 422, 800, 1172, 1181, 1346, 1574
NaeI	GCCGGC	1 cut(s)	1579
NcoI	CCATGG	1 cut(s)	1587
NdeII	GATC	4 cut(s)	372, 556, 817, 1462
NgoMIV	GCCGGC	1 cut(s)	1577
NlaIII	CATG	4 cut(s)	454, 929, 1499, 1591
NlaIV	GGNNCC	3 cut(s)	109, 165, 665
NmeAIII	GCCGAG	1 cut(s)	1063
NmuCI	GTSAC	5 cut(s)	22, 230, 493, 583, 1391
NsiI	ATGCAT	2 cut(s)	931, 1501
NspI	RCATGY	1 cut(s)	1499
PaeI	GCATGC	1 cut(s)	1499
PctI	GAATGC	3 cut(s)	552, 1177, 1351
PdiI	GCCGGC	1 cut(s)	1579
PdmI	GAANNNNTTC	1 cut(s)	1517
PfeI	GAWTC	1 cut(s)	1455
PkrI	GCNGC	9 cut(s)	205, 208, 298, 415, 793, 1036, 1186, 1420, 1450
Ple19I	CGATCG	1 cut(s)	559
PleI	GAGTC	1 cut(s)	882
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	882
Ppu21I	YACGTR	1 cut(s)	326
PpuMI	RGGWCCY	3 cut(s)	163, 664, 916
PshAI	GACNNNNGTC	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	1334
Psp124BI	GAGCTC	3 cut(s)	352, 781, 1315
Psp5II	RGGWCCY	3 cut(s)	163, 664, 916
Psp6I	CCWGG	2 cut(s)	222, 805
PspCI	CACGTG	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	2 cut(s)	222, 805
PspN4I	GGNNCC	3 cut(s)	109, 165, 665
PspPI	GGNCC	4 cut(s)	68, 163, 664, 916
PspPPI	RGGWCCY	3 cut(s)	163, 664, 916
PstI	CTGCAG	1 cut(s)	1570
PstNI	CAGNNNCTG	2 cut(s)	1565, 1574
PvuI	CGATCG	1 cut(s)	559
PvuII	CAGCTG	4 cut(s)	206, 299, 416, 1187
RsaI	GTAC	3 cut(s)	238, 833, 982
RsaNI	GTAC	3 cut(s)	237, 832, 981
SacI	GAGCTC	3 cut(s)	352, 781, 1315
SatI	GCNGC	9 cut(s)	204, 207, 297, 414, 792, 1035, 1185, 1419, 1449
Sau3AI	GATC	4 cut(s)	372, 556, 817, 1462
Sau96I	GGNCC	4 cut(s)	68, 163, 664, 916
ScaI	AGTACT	1 cut(s)	982
SchI	GAGTC	1 cut(s)	882
ScrFI	CCNGG	2 cut(s)	224, 807
SduI	GDGCHC	4 cut(s)	352, 781, 1120, 1315
SfaNI	GCATC	6 cut(s)	676, 938, 1153, 1208, 1247, 1508
SfcI	CTRYAG	1 cut(s)	1566
SinI	GGWCC	4 cut(s)	68, 163, 664, 916
SmlI	CTYRAG	2 cut(s)	365, 782
SmoI	CTYRAG	2 cut(s)	365, 782
SphI	GCATGC	1 cut(s)	1499
Sse9I	AATT	8 cut(s)	6, 117, 433, 551, 648, 963, 1014, 1331
SsiI	CCGC	1 cut(s)	1034
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	4 cut(s)	92, 353, 920, 1490
SstI	GAGCTC	3 cut(s)	352, 781, 1315
StyD4I	CCNGG	2 cut(s)	222, 805
StyI	CCWWGG	3 cut(s)	919, 1470, 1587
TaaI	ACNGT	6 cut(s)	139, 236, 395, 593, 868, 1607
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	555, 932, 1388
TasI	AATT	8 cut(s)	6, 117, 433, 551, 648, 963, 1014, 1331
TatI	WGTACW	1 cut(s)	980
TauI	GCSGC	1 cut(s)	1037
TfiI	GAWTC	1 cut(s)	1455
TscAI	CASTG	6 cut(s)	400, 592, 598, 1378, 1429, 1575
TseFI	GTSAC	5 cut(s)	22, 230, 493, 583, 1391
TseI	GCWGC	8 cut(s)	203, 206, 296, 413, 791, 1184, 1418, 1448
Tsp45I	GTSAC	5 cut(s)	22, 230, 493, 583, 1391
TspDTI	ATGAA	4 cut(s)	1065, 1083, 1293, 1449
TspRI	CASTG	6 cut(s)	400, 592, 598, 1378, 1429, 1575
Vha464I	CTTAAG	2 cut(s)	365, 782
VpaK11BI	GGWCC	4 cut(s)	68, 163, 664, 916
VspI	ATTAAT	1 cut(s)	1334
XagI	CCTNNNNNAGG	2 cut(s)	503, 1028
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	1 cut(s)	1499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmaJI	CCTAGG	1 cut(s)	919
XmnI	GAANNNNTTC	1 cut(s)	1517
XspI	CTAG	4 cut(s)	92, 353, 920, 1490
ZrmI	AGTACT	1 cut(s)	982
Zsp2I	ATGCAT	2 cut(s)	931, 1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.