Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0005260

Physical Location & Seq

Genomic Coordinates Reverse (-)

224146 .. 226769

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001287.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atgtccaaagaggttgaagacagcgaactagcagatgtggctgctgtcagtgcaggaaacaactatgaagtaggacaaatgattgctgaagccttgagtaaggtgggtcgaaagggtgttgtgacacttgaagaggggaaaagtgctgagaacagtctttatgttgttgaaggaatgcaatttgatcgtggttatatctcaccttacttcgtcactgatagtgagaaaatggctgttgaatatgagaactgcaagttgcttcttgttgataaaaagataacaaatgcaagagaccttgttaacattttggaggatgctataagaggaggatacccagttgtgataattgccgaagacattgaacaagaagctctggcaactcttgttgtgaacaagctcagaggatctctaaagattgctgccctaaaagctcctggatttggagatcgcaagagccagtatctcgatgatattgctatattgaccggaggaactgtgatcagagaagaggtggggcttacattggacaacgttgggaaggaggtccttggccacgcttcaaaggtggtgcttacaaaggataccagcacaattgttggtgatggaagtacccaggaagcagttaacaaaagagtggcacaaattaaaaaccttattgaggctgcagagcaggagtatgaaaaggaaaaacttagtgaaaggattgcaaaactatctggtggtgttgccgtgatacaggtcggagcacaaactgagacagagctgaaagaaaagaaacttagagttgaagatgctctcaatgcaacaaaggcagctgttgaggagggtattgttgttggaggaggatgcacccttctgaggttggctgcaaaggttgatgcaattaagaatgctcttgataatgacgaagaaaaggttggagcagatattgttaaaagagctcttatttaccctctgaaattgatagccaagaatgctggtgtgaatggaagtgtggtcagcgagaaggtgctctctagcgacaactttaagtatggatataatgctgcaactggaaactatgaagatttaatggctgctggaatcattgatcctaccaaggtggtgagatgttgcctggagcatgcttcctccgtggcaaaaactttcttaatgtcggactgtgtagttgttgagatcaaggagccggagccagtgcctgctgcaaaccccatggacaactcaggatacggttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

412

Amino Acids

44.13

Weight (kDa)

4.87

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT3G13470 AT5G56500 AT5G56500
fragaria_vesca	FvH4_3g45800 FvH4_3g45800 FvH4_3g45800 FvH4_3g45800
malus_domestica	MD03G1002900.v1.1 MD11G1002700.v1.1
prunus_persica	Prupe.6G002500_v2.0.a1 Prupe.6G002500_v2.0.a1
pyrus_communis	pycom03g00280 pycom11g00250
rosa_chinensis	RchiOBHm_Chr5g0083881
rosa_laevigata	RLG00000037061
rosa_multiflora	Rmu_sc0001287.1_g000043
rosa_roxburghii	Rroxscaffold_1G00000710
rosa_rugosa	Rorug05G0487100 Rorug05G0487200
rosa_samantha	Rh5AG540000 Rh5BG565200 Rh5CG587000 Rh5DG573600
rosa_wichuraiana	Rw5G050210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	531
AclWI	GGATC	2 cut(s)	412, 1085
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	3 cut(s)	440, 658, 858
AgsI	TTSAA	7 cut(s)	17, 131, 170, 239, 362, 561, 788
AjnI	CCWGG	3 cut(s)	433, 612, 1116
AjuI	GAANNNNNNNTTGG	2 cut(s)	900, 932
AluBI	AGCT	6 cut(s)	371, 397, 431, 763, 815, 941
AluI	AGCT	6 cut(s)	371, 397, 431, 763, 815, 941
Alw21I	GWGCWC	3 cut(s)	748, 943, 1014
Alw26I	GTCTC	2 cut(s)	285, 749
AlwI	GGATC	2 cut(s)	412, 1085
AlwNI	CAGNNNCTG	1 cut(s)	1199
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	8 cut(s)	41, 419, 662, 812, 866, 1046, 1076, 1202
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	3 cut(s)	192, 611, 1117
AvaII	GGWCC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	943
BbsI	GAAGAC	2 cut(s)	24, 360
Bbv12I	GWGCWC	3 cut(s)	748, 943, 1014
BbvI	GCAGC	8 cut(s)	28, 406, 649, 824, 853, 1033, 1063, 1189
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	1 cut(s)	713
BcgI	CGANNNNNNTGC	4 cut(s)	167, 201, 455, 489
BciT130I	CCWGG	3 cut(s)	435, 614, 1118
BciVI	GTATCC	3 cut(s)	323, 574, 1220
BclI	TGATCA	1 cut(s)	498
BcoDI	GTCTC	2 cut(s)	285, 749
BfaI	CTAG	2 cut(s)	29, 1017
BfmI	CTRYAG	1 cut(s)	663
BfuI	GTATCC	3 cut(s)	323, 574, 1220
BisI	GCNGC	8 cut(s)	42, 420, 663, 813, 867, 1047, 1077, 1203
BlsI	GCNGC	8 cut(s)	43, 421, 664, 814, 868, 1048, 1078, 1204
Bme1390I	CCNGG	3 cut(s)	435, 614, 1118
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	2 cut(s)	1185, 1191
BmrFI	CCNGG	3 cut(s)	435, 614, 1118
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	4 cut(s)	304, 781, 836, 868
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	2 cut(s)	24, 360
BpmI	CTGGAG	1 cut(s)	1139
BpuEI	CTTGAG	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	5 cut(s)	547, 612, 1098, 1134, 1212
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 658, 858
Bse1I	ACTGG	4 cut(s)	335, 457, 1057, 1193
BseBI	CCWGG	3 cut(s)	435, 614, 1118
BseDI	CCNNGG	5 cut(s)	547, 612, 1098, 1134, 1212
BseGI	GGATG	2 cut(s)	319, 851
BseLI	CCNNNNNNNGG	3 cut(s)	440, 658, 858
BseMII	CTCAG	5 cut(s)	138, 412, 744, 848, 1236
BseNI	ACTGG	4 cut(s)	335, 457, 1057, 1193
BseRI	GAGGAG	3 cut(s)	339, 836, 855
BseXI	GCAGC	8 cut(s)	28, 406, 649, 824, 853, 1033, 1063, 1189
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	552
BsiHKAI	GWGCWC	3 cut(s)	748, 943, 1014
BsiSI	CCGG	2 cut(s)	486, 1187
BslI	CCNNNNNNNGG	3 cut(s)	440, 658, 858
BsmAI	GTCTC	2 cut(s)	285, 749
BsmI	GAATGC	3 cut(s)	180, 895, 979
BsnI	GGCC	1 cut(s)	552
Bso31I	GGTCTC	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	748, 943, 1014
Bsp143I	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
Bsp19I	CCATGG	1 cut(s)	1212
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	5 cut(s)	139, 411, 745, 849, 1235
BspLI	GGNNCC	2 cut(s)	1185, 1191
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	2 cut(s)	412, 1085
BspTNI	GGTCTC	1 cut(s)	285
BsrI	ACTGG	4 cut(s)	335, 457, 1057, 1193
BssECI	CCNNGG	5 cut(s)	547, 612, 1098, 1134, 1212
BssMI	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
BssT1I	CCWWGG	3 cut(s)	547, 1098, 1212
Bst2UI	CCWGG	3 cut(s)	435, 614, 1118
Bst4CI	ACNGT	4 cut(s)	155, 496, 1163, 1232
Bst6I	CTCTTC	2 cut(s)	126, 501
BstC8I	GCNNGC	2 cut(s)	1125, 1200
BstDEI	CTNAG	7 cut(s)	147, 398, 692, 753, 779, 857, 1222
BstDSI	CCRYGG	2 cut(s)	1134, 1212
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	319, 851
BstKTI	GATC	6 cut(s)	187, 407, 448, 501, 1093, 1179
BstMAI	GTCTC	2 cut(s)	285, 749
BstMBI	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 50, 428, 800, 809, 974
BstNI	CCWGG	3 cut(s)	435, 614, 1118
BstNSI	RCATGY	1 cut(s)	1127
BstSCI	CCNGG	3 cut(s)	433, 612, 1116
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	8 cut(s)	28, 406, 649, 824, 853, 1033, 1063, 1189
BstV2I	GAAGAC	2 cut(s)	24, 360
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuI	GTATCC	3 cut(s)	323, 574, 1220
BsuRI	GGCC	1 cut(s)	552
BtgI	CCRYGG	2 cut(s)	1134, 1212
BtsCI	GGATG	2 cut(s)	319, 851
BtsIMutI	CAGTG	3 cut(s)	55, 213, 1200
Cac8I	GCNNGC	2 cut(s)	1125, 1200
CaiI	CAGNNNCTG	1 cut(s)	1199
Cfr13I	GGNCC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	2 cut(s)	1124, 1213
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	7 cut(s)	147, 398, 692, 753, 779, 857, 1222
DpnI	GATC	6 cut(s)	186, 406, 447, 500, 1092, 1178
DpnII	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	126, 501
EarI	CTCTTC	2 cut(s)	126, 501
Ecl136II	GAGCTC	1 cut(s)	941
Eco130I	CCWWGG	3 cut(s)	547, 1098, 1212
Eco24I	GRGCYC	1 cut(s)	943
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	544
Eco53kI	GAGCTC	1 cut(s)	941
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	941
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	3 cut(s)	433, 612, 1116
EcoT14I	CCWWGG	3 cut(s)	547, 1098, 1212
EcoT38I	GRGCYC	1 cut(s)	943
ErhI	CCWWGG	3 cut(s)	547, 1098, 1212
FaeI	CATG	2 cut(s)	1127, 1216
FatI	CATG	2 cut(s)	1123, 1212
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	8 cut(s)	42, 420, 663, 813, 867, 1047, 1077, 1203
FokI	GGATG	2 cut(s)	326, 858
FriOI	GRGCYC	1 cut(s)	943
Fsp4HI	GCNGC	8 cut(s)	42, 420, 663, 813, 867, 1047, 1077, 1203
FspBI	CTAG	2 cut(s)	29, 1017
GluI	GCNGC	8 cut(s)	42, 420, 663, 813, 867, 1047, 1077, 1203
GsuI	CTGGAG	1 cut(s)	1139
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	2 cut(s)	486, 1187
Hin1II	CATG	2 cut(s)	1127, 1216
HincII	GTYRAC	2 cut(s)	301, 625
HindII	GTYRAC	2 cut(s)	301, 625
HinfI	GANTC	1 cut(s)	1083
HpaI	GTTAAC	2 cut(s)	301, 625
HpaII	CCGG	2 cut(s)	486, 1187
HphI	GGTGA	3 cut(s)	192, 611, 1117
Hpy166II	GTNNAC	3 cut(s)	301, 391, 625
Hpy188I	TCNGA	6 cut(s)	401, 503, 743, 858, 957, 1159
Hpy188III	TCNNGA	3 cut(s)	464, 896, 1224
Hpy8I	GTNNAC	3 cut(s)	301, 391, 625
HpyAV	CCTTC	4 cut(s)	164, 532, 863, 1000
HpyCH4III	ACNGT	4 cut(s)	155, 496, 1163, 1232
HpyCH4IV	ACGT	1 cut(s)	531
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 50, 428, 800, 809, 974
HpyF3I	CTNAG	7 cut(s)	147, 398, 692, 753, 779, 857, 1222
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	2 cut(s)	1127, 1216
Ksp22I	TGATCA	1 cut(s)	498
KspAI	GTTAAC	2 cut(s)	301, 625
Kzo9I	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
LmnI	GCTCC	6 cut(s)	436, 743, 920, 1120, 1183, 1189
Lsp1109I	GCAGC	8 cut(s)	28, 406, 649, 824, 853, 1033, 1063, 1189
LweI	GCATC	4 cut(s)	304, 781, 836, 868
MaeI	CTAG	2 cut(s)	29, 1017
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	121, 211, 1232
MalI	GATC	6 cut(s)	186, 406, 447, 500, 1092, 1178
MboI	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
MboII	GAAGA	7 cut(s)	29, 143, 365, 518, 800, 920, 1076
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	3 cut(s)	748, 943, 1014
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	6 cut(s)	179, 345, 591, 642, 882, 959
MluNI	TGGCCA	1 cut(s)	552
MmeI	TCCRAC	4 cut(s)	721, 817, 898, 1137
Mox20I	TGGCCA	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	8 cut(s)	300, 624, 645, 885, 933, 1029, 1070, 1151
Msp20I	TGGCCA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	2 cut(s)	486, 1187
MspR9I	CCNGG	3 cut(s)	435, 614, 1118
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	3 cut(s)	180, 895, 979
MvaI	CCWGG	3 cut(s)	435, 614, 1118
MwoI	GCNNNNNNNGC	6 cut(s)	38, 50, 428, 800, 809, 974
NcoI	CCATGG	1 cut(s)	1212
NdeII	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
NlaIII	CATG	2 cut(s)	1127, 1216
NlaIV	GGNNCC	2 cut(s)	1185, 1191
NmuCI	GTSAC	2 cut(s)	121, 211
NspI	RCATGY	1 cut(s)	1127
PaeI	GCATGC	1 cut(s)	1127
PctI	GAATGC	3 cut(s)	180, 895, 979
PfeI	GAWTC	1 cut(s)	1083
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	8 cut(s)	43, 421, 664, 814, 868, 1048, 1078, 1204
PpuMI	RGGWCCY	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	943
Psp1406I	AACGTT	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	3 cut(s)	433, 612, 1116
PspGI	CCWGG	3 cut(s)	433, 612, 1116
PspN4I	GGNNCC	2 cut(s)	1185, 1191
PspPI	GGNCC	1 cut(s)	544
PspPPI	RGGWCCY	1 cut(s)	544
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	1199
PsuI	RGATCY	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
SacI	GAGCTC	1 cut(s)	943
SaqAI	TTAA	8 cut(s)	300, 624, 645, 885, 933, 1029, 1070, 1151
SatI	GCNGC	8 cut(s)	42, 420, 663, 813, 867, 1047, 1077, 1203
Sau3AI	GATC	6 cut(s)	184, 404, 445, 498, 1090, 1176
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	3 cut(s)	435, 614, 1118
SduI	GDGCHC	3 cut(s)	748, 943, 1014
SfaNI	GCATC	4 cut(s)	304, 781, 836, 868
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SphI	GCATGC	1 cut(s)	1127
Sse9I	AATT	6 cut(s)	179, 345, 591, 642, 882, 959
SspMI	CTAG	2 cut(s)	29, 1017
SstI	GAGCTC	1 cut(s)	943
StyD4I	CCNGG	3 cut(s)	433, 612, 1116
StyI	CCWWGG	3 cut(s)	547, 1098, 1212
TaaI	ACNGT	4 cut(s)	155, 496, 1163, 1232
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	109, 465
TasI	AATT	6 cut(s)	179, 345, 591, 642, 882, 959
TfiI	GAWTC	1 cut(s)	1083
Tru1I	TTAA	8 cut(s)	300, 624, 645, 885, 933, 1029, 1070, 1151
Tru9I	TTAA	8 cut(s)	300, 624, 645, 885, 933, 1029, 1070, 1151
TscAI	CASTG	3 cut(s)	55, 220, 1200
TseFI	GTSAC	2 cut(s)	121, 211
TseI	GCWGC	8 cut(s)	41, 419, 662, 812, 866, 1046, 1076, 1202
Tsp45I	GTSAC	2 cut(s)	121, 211
TspDTI	ATGAA	3 cut(s)	81, 693, 1077
TspGWI	ACGGA	1 cut(s)	1123
TspRI	CASTG	3 cut(s)	55, 220, 1200
VpaK11BI	GGWCC	1 cut(s)	544
XagI	CCTNNNNNAGG	1 cut(s)	656
XceI	RCATGY	1 cut(s)	1127
XspI	CTAG	2 cut(s)	29, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.