AT5G56500
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22873666 .. 22877407
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56500.2

Sequence Viewer

Length: 1794 bp
ATGGCATCAACCTTTAGCGCAACGTCGTCAATGGGTTCATCTTTGGCTCCTCCTTCGAATCGATTGTCATCTTTTGTTTCGATCTCATCAAGCTCTTTTGGAAGGACTCAGAGTATTGCTCAGAGGAAAGCAAGGTTTCCTAAAATATATGCGGCTAAGCAATTGCATTTCAATAAGGACGGGACTGCGATTAAGAAGCTTCAAGCTGGTGTGAATAAACTTGCGGATTTAGTTGGGGTTACTTTAGGTCCTAAAGGCAGGAATGTTGTTCTAGAGAGCAAATACGGTTCCCCTAGAATCGTTAATGATGGTGTTACGGTCGCTAGAGAGGTTGAGCTTGAGGATCCAGTTGAGAACATTGGTGCTAAGCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTGGTGATGGAACAACGACTTCTGTTGTTCTTGCTCAAGGTCTTATTGCTGAAGGTGTAAAGGTGGTAGCTGCTGGTGCAAATCCTGTTTTGATTACCAGAGGTATTGAGAAAACCACCAAAGCTCTTGTGGCTGAGTTGAAGAAAATGTCAAAGGAGGTTGAAGACAGTGAACTAGCAGATGTTGCAGCAGTTAGTGCAGGAAACAATTACGAAGTAGGCAATATGATTGCAGAAGCAATGGCAAAAGTTGGTCGTAAAGGTGTTGTCACTCTAGAGGAAGGCAAAAGCGCTGAGAACAGCCTTTACGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCTCCTTACTTTGTCACCGACAGTGAGAAAATGTGTGCAGAATATGAGAACTGCAAGTTGTTTCTTGTTGACAAAAAGATAACAAATGCTAGAGATATTATTAGCATTCTGGAAGATGCGATTAAAGGTGGATACCCGCTTTTGATCATTGCTGAAGATATTGAGCAAGAGCCATTAGCGACTCTTGTTGTTAACAAGCTTCGTGGGACAATAAAAGTTGCTGCTTTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCCAGTACCTTGATGACATTGCTGCGCTTACAGGAGCTACTGTGATTAGGGAAGAAGTTGGACTTCAGTTGGAGAAAGTTGGACCAGAAGTTTTGGGTAATGCTGGTAAAGTGGTTCTCACAAAAGATACTACAACGATAGTTGGTGATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTGAACAGATCAAGAATCTTATCGAGGCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATGAGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCACAAACTGAGACAGAGCTTAAGGAGAAGAAATTAAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTGTGGAAGAAGGTATTGTTGTTGGCGGAGGATGTACTCTGCTAAGACTTGCATCGAAAGTGGACGCTATTAAAGAGACTCTAGCAAACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGAAAGCATTGAGCTACCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTGTCAGTGAGAAGGTTCTTTCTAGTGACAACCCTAAACATGGTTACAATGCTGCAACTGGCAAATACGAAGATCTCATGGCTGCAGGAATCATTGATCCAACCAAAGTTGTGAGATGTTGCCTAGAGCATGCTTCATCTGTGGCAAAGACATTCTTGATGTCTGATTGTGTTGTTGTGGAGATCAAGGAGCCTGAATCAGCAGCTCCTGCTGGTAACCCTATGGACAATTCAGGTTACGGCTTCTAA

Protein Analysis

597

Amino Acids

63.32

Weight (kDa)

5.73

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 74 - 576 1.8e-83 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 152, 224, 887, 1272, 1392
AclWI GGATC 3 cut(s) 338, 351, 1637
AcuI CTGAAG 5 cut(s) 477, 924, 1055, 1185, 1529
AfaI GTAC 3 cut(s) 1013, 1162, 1402
AfeI AGCGCT 1 cut(s) 697
AfiI CCNNNNNNNGG 2 cut(s) 992, 1586
AflII CTTAAG 1 cut(s) 1316
AgsI TTSAA 8 cut(s) 172, 203, 547, 569, 722, 979, 1190, 1340
AjnI CCWGG 1 cut(s) 985
AjuI GAANNNNNNNTTGG 2 cut(s) 1452, 1484
Alw21I GWGCWC 1 cut(s) 1300
Alw26I GTCTC 3 cut(s) 370, 1301, 1436
AlwI GGATC 3 cut(s) 338, 351, 1637
AlwNI CAGNNNCTG 1 cut(s) 1754
Aor51HI AGCGCT 1 cut(s) 697
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 3 cut(s) 20, 698, 1033
AspS9I GGNCC 2 cut(s) 248, 1088
AsuHPI GGTGA 3 cut(s) 422, 757, 1163
AsuII TTCGAA 1 cut(s) 56
AvaII GGWCC 2 cut(s) 248, 1088
BamHI GGATCC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 1300
BccI CCATC 3 cut(s) 302, 407, 1148
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 1 cut(s) 987
BciVI GTATCC 1 cut(s) 875
BclI TGATCA 1 cut(s) 894
BcoDI GTCTC 3 cut(s) 370, 1301, 1436
BfmI CTRYAG 1 cut(s) 1629
BfoI RGCGCY 1 cut(s) 699
BfrI CTTAAG 1 cut(s) 1316
BfuI GTATCC 1 cut(s) 875
BglII AGATCT 1 cut(s) 1618
BlpI GCTNAGC 2 cut(s) 156, 366
BmcAI AGTACT 1 cut(s) 1162
Bme1390I CCNGG 1 cut(s) 987
Bme18I GGWCC 2 cut(s) 248, 1088
BmgT120I GGNCC 2 cut(s) 248, 1088
BmiI GGNNCC 4 cut(s) 48, 289, 345, 1737
BmrFI CCNGG 1 cut(s) 987
BmsI GCATC 4 cut(s) 14, 856, 1333, 1427
BpiI GAAGAC 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bpu1102I GCTNAGC 2 cut(s) 156, 366
Bpu14I TTCGAA 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 359, 426
Bsa29I ATCGAT 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 1032, 1062
Bsc4I CCNNNNNNNGG 2 cut(s) 992, 1586
Bse1I ACTGG 3 cut(s) 347, 1009, 1609
Bse3DI GCAATG 3 cut(s) 651, 897, 1023
Bse8I GATNNNNATC 1 cut(s) 67
BseBI CCWGG 1 cut(s) 987
BseCI ATCGAT 1 cut(s) 61
BseGI GGATG 1 cut(s) 1403
BseJI GATNNNNATC 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 992, 1586
BseMI GCAATG 3 cut(s) 651, 897, 1023
BseMII CTCAG 5 cut(s) 122, 134, 531, 690, 1296
BseNI ACTGG 3 cut(s) 347, 1009, 1609
BseRI GAGGAG 1 cut(s) 39
BsgI GTGCAG 2 cut(s) 624, 807
Bsh1285I CGRYCG 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 1300
BslFI GGGAC 2 cut(s) 196, 970
BslI CCNNNNNNNGG 2 cut(s) 992, 1586
BsmAI GTCTC 3 cut(s) 370, 1301, 1436
BsmFI GGGAC 2 cut(s) 196, 970
BsmI GAATGC 2 cut(s) 732, 855
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 1300
Bsp143I GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
Bsp1720I GCTNAGC 2 cut(s) 156, 366
BspACI CCGC 5 cut(s) 152, 224, 887, 1272, 1392
BspCNI CTCAG 5 cut(s) 121, 133, 532, 691, 1297
BspDI ATCGAT 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 48, 289, 345, 1737
BspMAI CTGCAG 1 cut(s) 1633
BspPI GGATC 3 cut(s) 338, 351, 1637
BspT104I TTCGAA 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 1316
BsrDI GCAATG 3 cut(s) 651, 897, 1023
BsrI ACTGG 3 cut(s) 347, 1009, 1609
BssMI GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 5 cut(s) 287, 319, 575, 773, 1048
Bst6I CTCTTC 1 cut(s) 1175
BstAFI CTTAAG 1 cut(s) 1316
BstAPI GCANNNNNTGC 3 cut(s) 590, 602, 1754
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 1677
BstDEI CTNAG 9 cut(s) 108, 120, 156, 366, 403, 540, 699, 1305, 1409
BstEII GGTNACC 1 cut(s) 1760
BstF5I GGATG 1 cut(s) 1403
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 3 cut(s) 20, 698, 1033
BstKTI GATC 8 cut(s) 84, 346, 739, 897, 1197, 1621, 1645, 1731
BstMAI GTCTC 3 cut(s) 370, 1301, 1436
BstMBI GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 9 cut(s) 482, 536, 590, 602, 980, 1352, 1361, 1526, 1754
BstNI CCWGG 1 cut(s) 987
BstNSI RCATGY 1 cut(s) 1679
BstPI GGTNACC 1 cut(s) 1760
BstSCI CCNGG 1 cut(s) 985
BstSFI CTRYAG 1 cut(s) 1629
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 2 cut(s) 343, 1618
BstYI RGATCY 2 cut(s) 343, 1618
Bsu15I ATCGAT 1 cut(s) 61
BsuI GTATCC 1 cut(s) 875
BsuTUI ATCGAT 1 cut(s) 61
BtsCI GGATG 1 cut(s) 1403
BtsIMutI CAGTG 4 cut(s) 580, 778, 1505, 1558
Cac8I GCNNGC 1 cut(s) 1677
CaiI CAGNNNCTG 1 cut(s) 1754
CfoI GCGC 3 cut(s) 20, 698, 1033
Cfr13I GGNCC 2 cut(s) 248, 1088
ClaI ATCGAT 1 cut(s) 61
CseI GACGC 1 cut(s) 1439
Csp6I GTAC 3 cut(s) 1012, 1161, 1401
CspCI CAANNNNNGTGG 2 cut(s) 934, 969
CviAII CATG 3 cut(s) 1586, 1624, 1676
CviQI GTAC 3 cut(s) 1012, 1161, 1401
DdeI CTNAG 9 cut(s) 108, 120, 156, 366, 403, 540, 699, 1305, 1409
DpnI GATC 8 cut(s) 83, 345, 738, 896, 1196, 1620, 1644, 1730
DpnII GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
Eam1104I CTCTTC 1 cut(s) 1175
EarI CTCTTC 1 cut(s) 1175
EciI GGCGGA 1 cut(s) 1407
Eco47I GGWCC 2 cut(s) 248, 1088
Eco47III AGCGCT 1 cut(s) 697
Eco57I CTGAAG 5 cut(s) 477, 924, 1055, 1185, 1529
Eco91I GGTNACC 1 cut(s) 1760
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 1760
EcoRII CCWGG 1 cut(s) 985
FaeI CATG 3 cut(s) 1589, 1627, 1679
FalI AAGNNNNNCTT 6 cut(s) 1053, 1085, 1332, 1364, 1685, 1717
FaqI GGGAC 2 cut(s) 196, 970
FatI CATG 3 cut(s) 1585, 1623, 1675
FauI CCCGC 1 cut(s) 894
FbaI TGATCA 1 cut(s) 894
FokI GGATG 1 cut(s) 1410
GlaI GCGC 3 cut(s) 19, 697, 1032
HaeII RGCGCY 1 cut(s) 699
HgaI GACGC 1 cut(s) 1439
HhaI GCGC 3 cut(s) 20, 698, 1033
Hin1II CATG 3 cut(s) 1589, 1627, 1679
Hin6I GCGC 3 cut(s) 18, 696, 1031
HinP1I GCGC 3 cut(s) 18, 696, 1031
HincII GTYRAC 2 cut(s) 820, 943
HindII GTYRAC 2 cut(s) 820, 943
HindIII AAGCTT 3 cut(s) 197, 947, 1241
HinfI GANTC 8 cut(s) 58, 106, 297, 931, 1201, 1444, 1635, 1742
HpaI GTTAAC 1 cut(s) 943
HphI GGTGA 3 cut(s) 422, 757, 1163
Hpy166II GTNNAC 4 cut(s) 578, 820, 943, 1429
Hpy188I TCNGA 3 cut(s) 111, 123, 1711
Hpy188III TCNNGA 5 cut(s) 272, 680, 860, 1198, 1702
Hpy8I GTNNAC 4 cut(s) 578, 820, 943, 1429
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 7 cut(s) 63, 96, 452, 680, 716, 1370, 1552
HpyCH4III ACNGT 5 cut(s) 287, 319, 575, 773, 1048
HpyCH4IV ACGT 2 cut(s) 23, 714
HpyF10VI GCNNNNNNNGC 9 cut(s) 482, 536, 590, 602, 980, 1352, 1361, 1526, 1754
HpyF3I CTNAG 9 cut(s) 108, 120, 156, 366, 403, 540, 699, 1305, 1409
HpySE526I ACGT 2 cut(s) 23, 714
Hsp92II CATG 3 cut(s) 1589, 1627, 1679
HspAI GCGC 3 cut(s) 18, 696, 1031
Ksp22I TGATCA 1 cut(s) 894
KspAI GTTAAC 1 cut(s) 943
Kzo9I GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
LmnI GCTCC 7 cut(s) 52, 988, 1040, 1295, 1472, 1735, 1756
LweI GCATC 4 cut(s) 14, 856, 1333, 1427
MaeII ACGT 2 cut(s) 23, 714
MaeIII GTNAC 8 cut(s) 238, 313, 673, 763, 1571, 1589, 1760, 1781
MalI GATC 8 cut(s) 83, 345, 738, 896, 1196, 1620, 1644, 1730
MboI GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 2 cut(s) 343, 1618
MhlI GDGCHC 1 cut(s) 1300
MluCI AATT 8 cut(s) 161, 613, 731, 1254, 1262, 1284, 1328, 1774
MlyI GAGTC 3 cut(s) 100, 925, 1438
MmeI TCCRAC 6 cut(s) 1045, 1056, 1066, 1273, 1450, 1670
MspCI CTTAAG 1 cut(s) 1316
MspR9I CCNGG 1 cut(s) 987
MunI CAATTG 1 cut(s) 161
Mva1269I GAATGC 2 cut(s) 732, 855
MvaI CCWGG 1 cut(s) 987
MwoI GCNNNNNNNGC 9 cut(s) 482, 536, 590, 602, 980, 1352, 1361, 1526, 1754
NdeII GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
NlaIII CATG 3 cut(s) 1589, 1627, 1679
NlaIV GGNNCC 4 cut(s) 48, 289, 345, 1737
NmuCI GTSAC 3 cut(s) 673, 763, 1571
NspI RCATGY 1 cut(s) 1679
NspV TTCGAA 1 cut(s) 56
PaeI GCATGC 1 cut(s) 1679
PctI GAATGC 2 cut(s) 732, 855
PfeI GAWTC 5 cut(s) 58, 297, 1201, 1635, 1742
PfoI TCCNGGA 1 cut(s) 985
PleI GAGTC 3 cut(s) 100, 925, 1438
PpsI GAGTC 3 cut(s) 100, 925, 1438
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 985
PspEI GGTNACC 1 cut(s) 1760
PspGI CCWGG 1 cut(s) 985
PspN4I GGNNCC 4 cut(s) 48, 289, 345, 1737
PspPI GGNCC 2 cut(s) 248, 1088
PspPPI RGGWCCY 1 cut(s) 248
PsrI GAACNNNNNNTAC 2 cut(s) 695, 727
PstI CTGCAG 1 cut(s) 1633
PstNI CAGNNNCTG 1 cut(s) 1754
PsuI RGATCY 2 cut(s) 343, 1618
RsaI GTAC 3 cut(s) 1013, 1162, 1402
RsaNI GTAC 3 cut(s) 1012, 1161, 1401
Sau3AI GATC 8 cut(s) 81, 343, 736, 894, 1194, 1618, 1642, 1728
Sau96I GGNCC 2 cut(s) 248, 1088
ScaI AGTACT 1 cut(s) 1162
SchI GAGTC 3 cut(s) 100, 925, 1438
ScrFI CCNGG 1 cut(s) 987
SduI GDGCHC 1 cut(s) 1300
SfaNI GCATC 4 cut(s) 14, 856, 1333, 1427
SfcI CTRYAG 1 cut(s) 1629
SfuI TTCGAA 1 cut(s) 56
SinI GGWCC 2 cut(s) 248, 1088
SmlI CTYRAG 3 cut(s) 338, 441, 1316
SmoI CTYRAG 3 cut(s) 338, 441, 1316
SphI GCATGC 1 cut(s) 1679
Sse9I AATT 8 cut(s) 161, 613, 731, 1254, 1262, 1284, 1328, 1774
SsiI CCGC 5 cut(s) 152, 224, 887, 1272, 1392
StyD4I CCNGG 1 cut(s) 985
TaaI ACNGT 5 cut(s) 287, 319, 575, 773, 1048
TaiI ACGT 2 cut(s) 26, 717
TaqI TCGA 5 cut(s) 56, 61, 80, 1209, 1421
TasI AATT 8 cut(s) 161, 613, 731, 1254, 1262, 1284, 1328, 1774
TatI WGTACW 2 cut(s) 1160, 1400
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 58, 297, 1201, 1635, 1742
TscAI CASTG 4 cut(s) 580, 778, 1512, 1558
TseFI GTSAC 3 cut(s) 673, 763, 1571
Tsp45I GTSAC 3 cut(s) 673, 763, 1571
TspDTI ATGAA 4 cut(s) 27, 1245, 1473, 1671
TspRI CASTG 4 cut(s) 580, 778, 1512, 1558
Vha464I CTTAAG 1 cut(s) 1316
VpaK11BI GGWCC 2 cut(s) 248, 1088
XbaI TCTAGA 2 cut(s) 271, 679
XceI RCATGY 1 cut(s) 1679
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
ZrmI AGTACT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.