Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005260

Physical Location & Seq

Genomic Coordinates Reverse (-)

67074051 .. 67076365

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0487200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTTCTCTTCGACTGGTTCTACGGCGTGCTCGCTTCCCTCGGTCTGTGGCAGAAGGAGGTCAAGATCTTGTTCCTAGGGCTCGATAATGATGGCAAGACCACCTTGCTTCACATGCTCAAAGATGATAGGCTGGTGCAGCATCAACCTATGCAATATCCCACATCCGAGGAGAGGAGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTATGCAAAGAGTTGTTTTTTAATGCCTCCTGGATTCCTGTGTGTGATAATTATGTCTACTGTCCAATGTAATGGGAACGGGTCAGTTGGTTTCTTGTCAAACCAGCAAAGAGCAATTGTTGCCTTAGCACGTGCAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTGCTATCTTCAATTCTTCAATCGCCTCGAATTCAAGTAGCAAAGCACATGGCAATGATGGTCATGAATATGTTCTGAGATGTATTCTCCGTCGAGCTGTCCGATATGGAAGAGAGGTGGTAAAAGCTCAAGAAGGATTTTTCAATGGGCTTGTACCGGTGCTGGCGGCACTGATGGGTGATGTATTTCCAGAGCTAAAACAACATGAAGCAGGCATTAGGGAGATAATCAAAGAGGAGGAAGAAGCATTTGGCAAGACTCTAATTAAGGGAATAGAAAAATTCAAAAAGGCAGCTCAAGATGTTCAAGGCAAAACATTTAGTGGGCAGGTTAGTACATTGTATTTTGATTTTACCCTTGCACCTTTTCTAGTCATATCTTATGCTCTGCAAAGTTGTTGCTGTGACAATGGTTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

282

Amino Acids

31.55

Weight (kDa)

8.79

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 87	3.9e-26	ADP-ribosylation factor family
AAA_12	PF13087	99 - 139	1.1e-09	AAA domain
tRNA-synt_2c	PF01411	160 - 254	5.3e-24	tRNA synthetases class II (A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT3G13470 AT5G56500 AT5G56500
fragaria_vesca	FvH4_3g45800 FvH4_3g45800 FvH4_3g45800 FvH4_3g45800
malus_domestica	MD03G1002900.v1.1 MD11G1002700.v1.1
prunus_persica	Prupe.6G002500_v2.0.a1 Prupe.6G002500_v2.0.a1
pyrus_communis	pycom03g00280 pycom11g00250
rosa_chinensis	RchiOBHm_Chr5g0083881
rosa_laevigata	RLG00000037061
rosa_multiflora	Rmu_sc0001287.1_g000043
rosa_roxburghii	Rroxscaffold_1G00000710
rosa_rugosa	Rorug05G0487100 Rorug05G0487200
rosa_samantha	Rh5AG540000 Rh5BG565200 Rh5CG587000 Rh5DG573600
rosa_wichuraiana	Rw5G050210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	1 cut(s)	593
AcsI	RAATTY	2 cut(s)	457, 707
AcvI	CACGTG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	582, 763
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgeI	ACCGGT	1 cut(s)	583
AgsI	TTSAA	7 cut(s)	199, 439, 447, 462, 571, 712, 734
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	4 cut(s)	524, 554, 622, 722
AluI	AGCT	4 cut(s)	524, 554, 622, 722
Alw21I	GWGCWC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	240
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	139, 719
ApoI	RAATTY	2 cut(s)	457, 707
AsiGI	ACCGGT	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	498
AspA2I	CCTAGG	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	617
AvrII	CCTAGG	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	84
BbrPI	CACGTG	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	151, 731
BccI	CCATC	3 cut(s)	86, 479, 595
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	2 cut(s)	77, 797
BfuAI	ACCTGC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	3 cut(s)	140, 594, 720
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	141, 595, 721
Bme1390I	CCNGG	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	540, 708
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	431
BsaJI	CCNNGG	3 cut(s)	40, 76, 168
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	40, 76, 168
BseGI	GGATG	1 cut(s)	164
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	3 cut(s)	185, 190, 677
BseXI	GCAGC	2 cut(s)	151, 731
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	33, 84
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	745
BsrDI	GCAATG	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	3 cut(s)	40, 76, 168
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	2 cut(s)	14, 532
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	5 cut(s)	29, 33, 232, 591, 640
BstDEI	CTNAG	2 cut(s)	376, 503
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 139, 371
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	151, 731
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	596
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	5 cut(s)	29, 33, 232, 591, 640
CaiI	CAGNNNCTG	1 cut(s)	240
CciI	TCATGA	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	583
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	581, 762
CspAI	ACCGGT	1 cut(s)	583
CviAII	CATG	4 cut(s)	115, 476, 491, 632
CviJI	RGCY	8 cut(s)	82, 133, 203, 524, 554, 577, 622, 722
CviKI_1	RGCY	8 cut(s)	82, 133, 203, 524, 554, 577, 622, 722
CviQI	GTAC	2 cut(s)	581, 762
DdeI	CTNAG	2 cut(s)	376, 503
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	14, 532
EarI	CTCTTC	2 cut(s)	14, 532
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	84
Eco72I	CACGTG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	4 cut(s)	118, 479, 494, 635
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	4 cut(s)	114, 475, 490, 631
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	3 cut(s)	140, 594, 720
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	140, 594, 720
FspBI	CTAG	2 cut(s)	77, 797
GluI	GCNGC	3 cut(s)	140, 594, 720
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	4 cut(s)	118, 479, 494, 635
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	2 cut(s)	285, 685
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	2 cut(s)	309, 420
Hpy188I	TCNGA	4 cut(s)	169, 225, 504, 530
Hpy188III	TCNNGA	6 cut(s)	64, 241, 491, 557, 617, 725
Hpy8I	GTNNAC	2 cut(s)	309, 420
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	3 cut(s)	49, 238, 554
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	6 cut(s)	139, 154, 257, 386, 788, 817
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 139, 371
HpyF3I	CTNAG	2 cut(s)	376, 503
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	4 cut(s)	118, 479, 494, 635
Kzo9I	GATC	1 cut(s)	66
Lsp1109I	GCAGC	2 cut(s)	151, 731
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	77, 797
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	830
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	4 cut(s)	427, 435, 549, 680
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	33, 84
MluCI	AATT	6 cut(s)	300, 366, 439, 457, 690, 707
MlyI	GAGTC	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	2 cut(s)	272, 693
MslI	CAYNNNNRTG	2 cut(s)	480, 495
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	282
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	115, 139, 371
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	118, 479, 494, 635
NmuCI	GTSAC	1 cut(s)	830
NspI	RCATGY	1 cut(s)	118
PagI	TCATGA	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PctI	GAATGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	285
PfoI	TCCNGGA	1 cut(s)	280
PinAI	ACCGGT	1 cut(s)	583
PkrI	GCNGC	3 cut(s)	141, 595, 721
PleI	GAGTC	1 cut(s)	679
PmaCI	CACGTG	1 cut(s)	383
PmlI	CACGTG	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	679
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	280
PspCI	CACGTG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	2 cut(s)	582, 763
RsaNI	GTAC	2 cut(s)	581, 762
RseI	CAYNNNNRTG	2 cut(s)	480, 495
SaqAI	TTAA	2 cut(s)	272, 693
SatI	GCNGC	3 cut(s)	140, 594, 720
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	33, 84
SfaNI	GCATC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	480, 495
SmlI	CTYRAG	2 cut(s)	555, 723
SmoI	CTYRAG	2 cut(s)	555, 723
Sse9I	AATT	6 cut(s)	300, 366, 439, 457, 690, 707
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	2 cut(s)	77, 797
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	12, 84, 455, 520
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	6 cut(s)	300, 366, 439, 457, 690, 707
TatI	WGTACW	1 cut(s)	761
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	272, 693
Tru9I	TTAA	2 cut(s)	272, 693
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	2 cut(s)	139, 719
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	2 cut(s)	507, 648
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	603
XapI	RAATTY	2 cut(s)	457, 707
XceI	RCATGY	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	2 cut(s)	77, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.