AT3G13470
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
4389215 .. 4393015
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13470.1

Sequence Viewer

Length: 1791 bp
ATGGCATCGACATTCACTGCCACGTCTTCCCTTGGTTCGTTGCTTGCTCCCAATGCTATCAAGTTGTCTTCTGCGACTAGCATCTCTTCAAGCTCGTTTGGAAGGAGACATAACGTGTGCGTCAGAAGATCCCGTCCTGCCATAGTATGTGCAGCCAAGGAGTTGCATTTCAATAAGGATGGGACTACCATAAGGAAACTTCAGACTGGTGTTAACAAGCTCGCGGACCTTGTTGGTGTCACACTTGGACCAAAAGGGAGAAATGTTGTTCTTGAGAGCAAGTATGGATCCCCAAGAATTGTTAATGATGGTGTCACTGTTGCGAGGGAGGTCGAGTTGGAGGACCCGGTTGAGAACATTGGTGCAAAGCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGGTGGTGGCTGCAGGTGCGAACCCTGTATTGATCACTAGGGGGATTGAGAAGACTGCAAAGGCTTTGGTTAACGAGCTGAAACTTATGTCTAAGGAGGTTGAAGACAGTGAACTTGCTGATGTGGCAGCTGTTAGTGCGGGTAATAACCACGAAGTTGGAAGTATGATTGCTGAAGCAATGAGCAAAGTGGGCAGGAAGGGTGTGGTGACCCTGGAGGAGGGAAAAAGCGCTGAGAACAACCTTTATGTTGTGGAAGGAATGCAATTTGACCGTGGTTATATCTCCCCATACTTTGTGACAGACAGTGAGAAAATGTCTGTTGAGTATGACAATTGCAAGTTGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTTCTAGAGGATGCGATTAGAGGCGGATACCCAATCCTCATAATTGCAGAAGATATTGAACAAGAAGCCTTAGCTACTCTTGTTGTTAACAAGCTTAGAGGCACACTGAAGATTGCAGCTCTCAAAGCTCCTGGATTTGGAGAGCGCAAGAGCCAATACCTTGACGATATTGCCATTCTAACTGGAGCAACTGTGATCAGAGAGGAAGTTGGTCTTTCTCTTGACAAAGCTGGAAAAGAGGTTCTGGGTAACGCTTCCAAGGTTGTCCTGACAAAGGAAATGACAACAATTGTGGGTGATGGGACCACACAAGAAGCAGTGAACAAGCGTGTTGTACAGATTAGGAATCTTATTGAGCAAGCGGAGCAAGACTACGAGAAGGAAAAATTAAATGAGAGAATTGCGAAGCTCTCTGGTGGAGTTGCTGTAATTCAGGTTGGAGCTCAAACTGAGACAGAGCTCAAAGAAAAGAAGCTGAGAGTGGAAGATGCTCTTAATGCTACAAAGGCTGCTGTTGAGGAAGGTATTGTCGTTGGTGGTGGTTGCACTCTGCTCCGGCTTGCATCAAAGGTCGATGCCATCAAGGATACCCTTGAAAATGATGAAGAAAAGGTTGGAGCGGAAATTGTTAAAAGAGCACTGAGTTACCCTCTGAAATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAGGTGCTGGCTAACGATAATGTGAAATTTGGATACAATGCTGCAACCGGCAAGTATGAAGACCTGATGGCTGCAGGCATCATCGACCCGACAAAGGTTGTGAGATGTTGCTTAGAACATGCCGCCTCAGTTGCAAAGACGTTCTTGATGTCTGACTGTGTGGTTGTTGAGATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAGGTTATGGATACTAA

Protein Analysis

596

Amino Acids

63.34

Weight (kDa)

5.6

Isoelectric Point (pI)

30.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 74 - 576 2.6e-80 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 470
Acc36I ACCTGC 1 cut(s) 470
AccBSI CCGCTC 1 cut(s) 1475
AccII CGCG 1 cut(s) 224
AciI CCGC 6 cut(s) 224, 605, 879, 1217, 1475, 1680
AclWI GGATC 5 cut(s) 123, 282, 295, 852, 1723
AcsI RAATTY 1 cut(s) 1583
AcuI CTGAAG 3 cut(s) 185, 660, 983
AfaI GTAC 2 cut(s) 418, 1191
AfeI AGCGCT 1 cut(s) 697
AfiI CCNNNNNNNGG 5 cut(s) 685, 840, 992, 1129, 1651
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 5 cut(s) 90, 172, 569, 914, 1451
AjiI CACGTC 1 cut(s) 24
AjnI CCWGG 2 cut(s) 678, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 1452, 1484
AloI GAACNNNNNNTCC 2 cut(s) 1080, 1112
Alw21I GWGCWC 3 cut(s) 1300, 1317, 1495
Alw26I GTCTC 2 cut(s) 100, 1301
AlwI GGATC 5 cut(s) 123, 282, 295, 852, 1723
AlwNI CAGNNNCTG 1 cut(s) 1751
Aor51HI AGCGCT 1 cut(s) 697
ApeKI GCWGC 9 cut(s) 152, 383, 386, 476, 593, 971, 1364, 1598, 1628
ApoI RAATTY 1 cut(s) 1583
AspLEI GCGC 2 cut(s) 698, 1002
AspS9I GGNCC 4 cut(s) 226, 248, 343, 1158
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 422, 685, 1163
AvaII GGWCC 4 cut(s) 226, 248, 343, 1158
BamHI GGATCC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 1300, 1317
BbsI GAAGAC 5 cut(s) 18, 60, 524, 576, 1623
Bbv12I GWGCWC 3 cut(s) 1300, 1317, 1495
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 9 cut(s) 164, 373, 395, 463, 605, 983, 1351, 1585, 1615
BccI CCATC 5 cut(s) 173, 302, 1148, 1442, 1618
BciT130I CCWGG 2 cut(s) 680, 987
BciVI GTATCC 4 cut(s) 875, 1435, 1583, 1778
BclI TGATCA 2 cut(s) 498, 1050
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 100, 1301
BfaI CTAG 3 cut(s) 78, 504, 860
BfmI CTRYAG 2 cut(s) 477, 1629
BfoI RGCGCY 1 cut(s) 699
BfuAI ACCTGC 1 cut(s) 470
BfuI GTATCC 4 cut(s) 875, 1435, 1583, 1778
Bme1390I CCNGG 3 cut(s) 347, 680, 987
Bme18I GGWCC 4 cut(s) 226, 248, 343, 1158
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 4 cut(s) 226, 248, 343, 1158
BmiI GGNNCC 3 cut(s) 289, 345, 1159
BmrFI CCNGG 3 cut(s) 347, 680, 987
BmsI GCATC 7 cut(s) 14, 90, 856, 1333, 1420, 1427, 1644
BpiI GAAGAC 5 cut(s) 18, 60, 524, 576, 1623
BplI GAGNNNNNCTC 2 cut(s) 1489, 1521
BpmI CTGGAG 2 cut(s) 701, 1059
Bpu10I CCTNAGC 2 cut(s) 456, 925
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 347
BsaJI CCNNGG 5 cut(s) 31, 156, 678, 739, 1113
BsaXI ACNNNNNCTCC 6 cut(s) 320, 350, 1032, 1062, 1266, 1296
Bsc4I CCNNNNNNNGG 5 cut(s) 685, 840, 992, 1129, 1651
Bse118I RCCGGY 1 cut(s) 1604
Bse1I ACTGG 3 cut(s) 211, 1042, 1745
Bse3DI GCAATG 1 cut(s) 651
BseBI CCWGG 2 cut(s) 680, 987
BseDI CCNNGG 5 cut(s) 31, 156, 678, 739, 1113
BseGI GGATG 2 cut(s) 184, 871
BseLI CCNNNNNNNGG 5 cut(s) 685, 840, 992, 1129, 1651
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 7 cut(s) 447, 690, 1296, 1322, 1487, 1698, 1788
BseNI ACTGG 3 cut(s) 211, 1042, 1745
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 9 cut(s) 164, 373, 395, 463, 605, 983, 1351, 1585, 1615
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 224
BsiHKAI GWGCWC 3 cut(s) 1300, 1317, 1495
BsiSI CCGG 3 cut(s) 347, 1411, 1605
BslFI GGGAC 2 cut(s) 196, 1171
BslI CCNNNNNNNGG 5 cut(s) 685, 840, 992, 1129, 1651
BsmAI GTCTC 2 cut(s) 100, 1301
BsmFI GGGAC 2 cut(s) 196, 1171
BsmI GAATGC 2 cut(s) 732, 1531
Bsp1286I GDGCHC 3 cut(s) 1300, 1317, 1495
Bsp1407I TGTACA 1 cut(s) 1189
Bsp143I GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
BspACI CCGC 6 cut(s) 224, 605, 879, 1217, 1475, 1680
BspCNI CTCAG 7 cut(s) 448, 691, 1297, 1323, 1488, 1697, 1787
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 3 cut(s) 289, 345, 1159
BspMAI CTGCAG 2 cut(s) 481, 1633
BspMI ACCTGC 1 cut(s) 470
BspPI GGATC 5 cut(s) 123, 282, 295, 852, 1723
BsrBI CCGCTC 1 cut(s) 1475
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 1604
BsrGI TGTACA 1 cut(s) 1189
BsrI ACTGG 3 cut(s) 211, 1042, 1745
BssAI RCCGGY 1 cut(s) 1604
BssECI CCNNGG 5 cut(s) 31, 156, 678, 739, 1113
BssMI GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
BssT1I CCWWGG 3 cut(s) 31, 156, 1113
Bst2UI CCWGG 2 cut(s) 680, 987
Bst4CI ACNGT 7 cut(s) 319, 416, 575, 740, 773, 1048, 1715
Bst6I CTCTTC 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 1189
BstC8I GCNNGC 7 cut(s) 45, 222, 381, 1215, 1416, 1566, 1633
BstDSI CCRYGG 1 cut(s) 739
BstEII GGTNACC 2 cut(s) 673, 1757
BstENI CCTNNNNNAGG 2 cut(s) 683, 1127
BstF5I GGATG 2 cut(s) 184, 871
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 2 cut(s) 698, 1002
BstKTI GATC 6 cut(s) 131, 290, 501, 847, 1053, 1731
BstMAI GTCTC 2 cut(s) 100, 1301
BstMBI GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
BstNI CCWGG 2 cut(s) 680, 987
BstNSI RCATGY 1 cut(s) 1679
BstPI GGTNACC 2 cut(s) 673, 1757
BstSCI CCNGG 3 cut(s) 345, 678, 985
BstSFI CTRYAG 2 cut(s) 477, 1629
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 9 cut(s) 164, 373, 395, 463, 605, 983, 1351, 1585, 1615
BstV2I GAAGAC 5 cut(s) 18, 60, 524, 576, 1623
BstX2I RGATCY 4 cut(s) 128, 287, 844, 1728
BstXI CCANNNNNNTGG 2 cut(s) 403, 623
BstYI RGATCY 4 cut(s) 128, 287, 844, 1728
BsuI GTATCC 4 cut(s) 875, 1435, 1583, 1778
BtgI CCRYGG 1 cut(s) 739
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 2 cut(s) 184, 871
BtsI GCAGTG 2 cut(s) 15, 1179
BtsIMutI CAGTG 7 cut(s) 15, 315, 580, 778, 959, 1179, 1493
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 7 cut(s) 45, 222, 381, 1215, 1416, 1566, 1633
CaiI CAGNNNCTG 1 cut(s) 1751
CfoI GCGC 2 cut(s) 698, 1002
Cfr10I RCCGGY 1 cut(s) 1604
Cfr13I GGNCC 4 cut(s) 226, 248, 343, 1158
CseI GACGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 417, 1190
CspCI CAANNNNNGTGG 2 cut(s) 1128, 1163
CviAII CATG 1 cut(s) 1676
CviQI GTAC 2 cut(s) 417, 1190
DpnI GATC 6 cut(s) 130, 289, 500, 846, 1052, 1730
DpnII GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 894
Ecl136II GAGCTC 2 cut(s) 1298, 1315
Eco130I CCWWGG 3 cut(s) 31, 156, 1113
Eco24I GRGCYC 2 cut(s) 1300, 1317
Eco47I GGWCC 4 cut(s) 226, 248, 343, 1158
Eco47III AGCGCT 1 cut(s) 697
Eco53kI GAGCTC 2 cut(s) 1298, 1315
Eco57I CTGAAG 3 cut(s) 185, 660, 983
Eco91I GGTNACC 2 cut(s) 673, 1757
EcoICRI GAGCTC 2 cut(s) 1298, 1315
EcoNI CCTNNNNNAGG 2 cut(s) 683, 1127
EcoO109I RGGNCCY 1 cut(s) 343
EcoO65I GGTNACC 2 cut(s) 673, 1757
EcoRII CCWGG 2 cut(s) 678, 985
EcoT14I CCWWGG 3 cut(s) 31, 156, 1113
EcoT38I GRGCYC 2 cut(s) 1300, 1317
ErhI CCWWGG 3 cut(s) 31, 156, 1113
FaeI CATG 1 cut(s) 1679
FalI AAGNNNNNCTT 6 cut(s) 1053, 1085, 1332, 1364, 1685, 1717
FaqI GGGAC 2 cut(s) 196, 1171
FatI CATG 1 cut(s) 1675
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 2 cut(s) 498, 1050
FokI GGATG 2 cut(s) 191, 878
FriOI GRGCYC 2 cut(s) 1300, 1317
FspBI CTAG 3 cut(s) 78, 504, 860
GlaI GCGC 2 cut(s) 697, 1001
GsuI CTGGAG 2 cut(s) 701, 1059
HaeII RGCGCY 1 cut(s) 699
HapII CCGG 3 cut(s) 347, 1411, 1605
HgaI GACGC 1 cut(s) 109
HhaI GCGC 2 cut(s) 698, 1002
Hin1II CATG 1 cut(s) 1679
Hin6I GCGC 2 cut(s) 696, 1000
HinP1I GCGC 2 cut(s) 696, 1000
HincII GTYRAC 4 cut(s) 214, 538, 820, 943
HindII GTYRAC 4 cut(s) 214, 538, 820, 943
HindIII AAGCTT 2 cut(s) 368, 947
HinfI GANTC 1 cut(s) 1201
HpaI GTTAAC 3 cut(s) 214, 538, 943
HpaII CCGG 3 cut(s) 347, 1411, 1605
HphI GGTGA 3 cut(s) 422, 685, 1163
Hpy166II GTNNAC 6 cut(s) 214, 538, 578, 820, 943, 1177
Hpy188I TCNGA 5 cut(s) 125, 204, 1055, 1509, 1711
Hpy188III TCNNGA 5 cut(s) 272, 860, 1076, 1123, 1702
Hpy8I GTNNAC 6 cut(s) 214, 538, 578, 820, 943, 1177
HpyAV CCTTC 6 cut(s) 96, 658, 716, 1228, 1370, 1552
HpyCH4III ACNGT 7 cut(s) 319, 416, 575, 740, 773, 1048, 1715
HpyCH4IV ACGT 3 cut(s) 23, 114, 1697
HpySE526I ACGT 3 cut(s) 23, 114, 1697
Hsp92II CATG 1 cut(s) 1679
HspAI GCGC 2 cut(s) 696, 1000
Ksp22I TGATCA 2 cut(s) 498, 1050
KspAI GTTAAC 3 cut(s) 214, 538, 943
Kzo9I GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
LmnI GCTCC 7 cut(s) 52, 988, 1040, 1219, 1295, 1413, 1472
Lsp1109I GCAGC 9 cut(s) 164, 373, 395, 463, 605, 983, 1351, 1585, 1615
LweI GCATC 7 cut(s) 14, 90, 856, 1333, 1420, 1427, 1644
MaeI CTAG 3 cut(s) 78, 504, 860
MaeII ACGT 3 cut(s) 23, 114, 1697
MaeIII GTNAC 9 cut(s) 238, 313, 410, 673, 763, 829, 1103, 1499, 1757
MalI GATC 6 cut(s) 130, 289, 500, 846, 1052, 1730
MbiI CCGCTC 1 cut(s) 1475
MboI GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
MfeI CAATTG 2 cut(s) 799, 1143
MflI RGATCY 4 cut(s) 128, 287, 844, 1728
MhlI GDGCHC 3 cut(s) 1300, 1317, 1495
MmeI TCCRAC 4 cut(s) 318, 604, 1273, 1450
MseI TTAA 8 cut(s) 213, 303, 537, 942, 1244, 1350, 1485, 1536
MspA1I CMGCKG 2 cut(s) 386, 596
MspI CCGG 3 cut(s) 347, 1411, 1605
MspR9I CCNGG 3 cut(s) 347, 680, 987
MunI CAATTG 2 cut(s) 799, 1143
Mva1269I GAATGC 2 cut(s) 732, 1531
MvaI CCWGG 2 cut(s) 680, 987
MvnI CGCG 1 cut(s) 224
NciI CCSGG 1 cut(s) 347
NdeII GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
NlaIII CATG 1 cut(s) 1679
NlaIV GGNNCC 3 cut(s) 289, 345, 1159
NmuCI GTSAC 5 cut(s) 238, 313, 410, 673, 763
NspI RCATGY 1 cut(s) 1679
PaqCI CACCTGC 1 cut(s) 470
PctI GAATGC 2 cut(s) 732, 1531
PfeI GAWTC 1 cut(s) 1201
PfoI TCCNGGA 1 cut(s) 985
PpuMI RGGWCCY 1 cut(s) 343
Psp124BI GAGCTC 2 cut(s) 1300, 1317
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 678, 985
PspEI GGTNACC 2 cut(s) 673, 1757
PspGI CCWGG 2 cut(s) 678, 985
PspN4I GGNNCC 3 cut(s) 289, 345, 1159
PspPI GGNCC 4 cut(s) 226, 248, 343, 1158
PspPPI RGGWCCY 1 cut(s) 343
PstI CTGCAG 2 cut(s) 481, 1633
PstNI CAGNNNCTG 1 cut(s) 1751
PsuI RGATCY 4 cut(s) 128, 287, 844, 1728
PvuII CAGCTG 2 cut(s) 386, 596
RsaI GTAC 2 cut(s) 418, 1191
RsaNI GTAC 2 cut(s) 417, 1190
SacI GAGCTC 2 cut(s) 1300, 1317
SaqAI TTAA 8 cut(s) 213, 303, 537, 942, 1244, 1350, 1485, 1536
Sau3AI GATC 6 cut(s) 128, 287, 498, 844, 1050, 1728
Sau96I GGNCC 4 cut(s) 226, 248, 343, 1158
ScrFI CCNGG 3 cut(s) 347, 680, 987
SduI GDGCHC 3 cut(s) 1300, 1317, 1495
SfaNI GCATC 7 cut(s) 14, 90, 856, 1333, 1420, 1427, 1644
SfcI CTRYAG 2 cut(s) 477, 1629
SinI GGWCC 4 cut(s) 226, 248, 343, 1158
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SsiI CCGC 6 cut(s) 224, 605, 879, 1217, 1475, 1680
SspMI CTAG 3 cut(s) 78, 504, 860
SstI GAGCTC 2 cut(s) 1300, 1317
StyD4I CCNGG 3 cut(s) 345, 678, 985
StyI CCWWGG 3 cut(s) 31, 156, 1113
TaaI ACNGT 7 cut(s) 319, 416, 575, 740, 773, 1048, 1715
TaiI ACGT 3 cut(s) 26, 117, 1700
TaqI TCGA 4 cut(s) 8, 333, 1428, 1641
TatI WGTACW 1 cut(s) 1189
TauI GCSGC 1 cut(s) 1682
TfiI GAWTC 1 cut(s) 1201
Tru1I TTAA 8 cut(s) 213, 303, 537, 942, 1244, 1350, 1485, 1536
Tru9I TTAA 8 cut(s) 213, 303, 537, 942, 1244, 1350, 1485, 1536
TscAI CASTG 7 cut(s) 22, 322, 580, 778, 966, 1179, 1500
TseFI GTSAC 5 cut(s) 238, 313, 410, 673, 763
TseI GCWGC 9 cut(s) 152, 383, 386, 476, 593, 971, 1364, 1598, 1628
Tsp45I GTSAC 5 cut(s) 238, 313, 410, 673, 763
TspDTI ATGAA 2 cut(s) 1473, 1629
TspRI CASTG 7 cut(s) 22, 322, 580, 778, 966, 1179, 1500
VpaK11BI GGWCC 4 cut(s) 226, 248, 343, 1158
XagI CCTNNNNNAGG 2 cut(s) 683, 1127
XapI RAATTY 1 cut(s) 1583
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 1 cut(s) 1679
XspI CTAG 3 cut(s) 78, 504, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.