Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005260

Physical Location & Seq

Genomic Coordinates Reverse (-)

67060840 .. 67062686

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0487100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGCCAAGAACTTGAAGAACAAGCAGCGCTGCCGGTCATCCTCCGATGGCAAGATTTGGGCGAGTTGCCGAAAAACGAGCTGATTAATAAGGCTCTTGAAGACAATACCCCTCCTCGTGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTCCTCTCTGACCTGGACACAGCGCGACCCGGCCAGCGACCGACCGGAACTTCCACGTCCGGCCACCGATAGACGACGGACGACCACCACCTTCTTCGTCTTGCCGTCGCCAACAACCTCCTATCCTTGGATTGTCCATGCACTGAACGGAGAAGGAAACCCGACGACTAGAAGCCCGAACATTCACCAGCAACCTCTCTCGGGTTCGACGCGGTTGCTACGCCGGCGACTTCTCCAACGCATCTGGGCTTGGTTTCTGGTTCGATTGCTTCCCTGGACGAGGCCTGACCTTGAGTGGGAGTTGAACTTCGAAGATTTCTGGGTTGTAGCACAAGGCATCACCAACTCATCACCAACCCAGTCTCGGCAGCAAGCTTTGGAAAATGAAGTTTCTGTTACAATACCAGAAACTAGCAAAGAGTCTAATGTACCAACTAAGCAAAGGTGGTGCCTTCGGCCATGGTCATGGAATGTCCCATGGAATCAAATGAGAACACACAGAACCTTCAACTGCCATGGAGATGCAAATATGGAAGTTACGATCATCCATAGTATAGATAAGGGGTTTGGGGGACCACCTTCTTCTTCGTCAATGTCATTACGACGAGTTCAGACCAAAAGAGGGAGAGAGAGCTCTTCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

265

Amino Acids

30.76

Weight (kDa)

10.07

Isoelectric Point (pI)

67.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT3G13470 AT5G56500 AT5G56500
fragaria_vesca	FvH4_3g45800 FvH4_3g45800 FvH4_3g45800 FvH4_3g45800
malus_domestica	MD03G1002900.v1.1 MD11G1002700.v1.1
prunus_persica	Prupe.6G002500_v2.0.a1 Prupe.6G002500_v2.0.a1
pyrus_communis	pycom03g00280 pycom11g00250
rosa_chinensis	RchiOBHm_Chr5g0083881
rosa_laevigata	RLG00000037061
rosa_multiflora	Rmu_sc0001287.1_g000043
rosa_roxburghii	Rroxscaffold_1G00000710
rosa_rugosa	Rorug05G0487100 Rorug05G0487200
rosa_samantha	Rh5AG540000 Rh5BG565200 Rh5CG587000 Rh5DG573600
rosa_wichuraiana	Rw5G050210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	600
AccII	CGCG	2 cut(s)	177, 364
AciI	CCGC	1 cut(s)	364
AcoI	YGGCCR	3 cut(s)	183, 213, 608
AfaI	GTAC	1 cut(s)	582
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	7 cut(s)	119, 279, 353, 432, 448, 516, 774
AgsI	TTSAA	4 cut(s)	17, 101, 457, 661
AjiI	CACGTC	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	164, 425
AluBI	AGCT	4 cut(s)	82, 152, 527, 786
AluI	AGCT	4 cut(s)	82, 152, 527, 786
Alw21I	GWGCWC	1 cut(s)	788
Alw26I	GTCTC	1 cut(s)	519
Ama87I	CYCGRG	1 cut(s)	352
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	5 cut(s)	4, 183, 213, 434, 608
ApeKI	GCWGC	3 cut(s)	26, 31, 520
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	31, 177
AspS9I	GGNCC	2 cut(s)	4, 725
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	329, 484, 495
AsuII	TTCGAA	1 cut(s)	462
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	788
BauI	CACGAG	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	788
BbvI	GCAGC	3 cut(s)	18, 38, 532
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	2 cut(s)	166, 427
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	2 cut(s)	321, 564
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	3 cut(s)	27, 32, 521
BlsI	GCNGC	3 cut(s)	28, 33, 522
Bme1390I	CCNGG	3 cut(s)	166, 182, 427
Bme18I	GGWCC	1 cut(s)	725
BmeT110I	CYCGRG	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	4, 725
BmiI	GGNNCC	2 cut(s)	602, 726
BmrFI	CCNGG	3 cut(s)	166, 182, 427
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	402, 498, 664
BmuI	ACTGGG	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	1 cut(s)	775
Bpu14I	TTCGAA	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	182
BsaJI	CCNNGG	5 cut(s)	278, 425, 611, 629, 667
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	7 cut(s)	119, 279, 353, 432, 448, 516, 774
Bse118I	RCCGGY	2 cut(s)	34, 375
Bse1I	ACTGG	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	166, 427
BseDI	CCNNGG	5 cut(s)	278, 425, 611, 629, 667
BseGI	GGATG	2 cut(s)	39, 696
BseLI	CCNNNNNNNGG	7 cut(s)	119, 279, 353, 432, 448, 516, 774
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	18, 38, 532
Bsh1236I	CGCG	2 cut(s)	177, 364
Bsh1285I	CGRYCG	2 cut(s)	193, 197
BshFI	GGCC	5 cut(s)	6, 185, 215, 436, 610
BshNI	GGYRCC	1 cut(s)	600
BsiEI	CGRYCG	2 cut(s)	193, 197
BsiHKAI	GWGCWC	1 cut(s)	788
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	5 cut(s)	35, 182, 197, 212, 376
BslFI	GGGAC	2 cut(s)	611, 738
BslI	CCNNNNNNNGG	7 cut(s)	119, 279, 353, 432, 448, 516, 774
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	2 cut(s)	611, 738
BsnI	GGCC	5 cut(s)	6, 185, 215, 436, 610
BsoBI	CYCGRG	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	788
Bsp143I	GATC	1 cut(s)	693
Bsp19I	CCATGG	3 cut(s)	611, 629, 667
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	5 cut(s)	6, 185, 215, 436, 610
BspFNI	CGCG	2 cut(s)	177, 364
BspLI	GGNNCC	2 cut(s)	602, 726
BspQI	GCTCTTC	1 cut(s)	793
BspT104I	TTCGAA	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	600
BsrFI	RCCGGY	2 cut(s)	34, 375
BsrI	ACTGG	1 cut(s)	511
BssAI	RCCGGY	2 cut(s)	34, 375
BssECI	CCNNGG	5 cut(s)	278, 425, 611, 629, 667
BssMI	GATC	1 cut(s)	693
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	4 cut(s)	278, 611, 629, 667
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	166, 427
Bst6I	CTCTTC	1 cut(s)	793
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	3 cut(s)	187, 377, 525
BstDEI	CTNAG	1 cut(s)	588
BstDSI	CCRYGG	3 cut(s)	611, 629, 667
BstENI	CCTNNNNNAGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	39, 696
BstFNI	CGCG	2 cut(s)	177, 364
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 177
BstKTI	GATC	1 cut(s)	696
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	1 cut(s)	693
BstMCI	CGRYCG	2 cut(s)	193, 197
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	2 cut(s)	166, 427
BstSCI	CCNGG	3 cut(s)	164, 180, 425
BstUI	CGCG	2 cut(s)	177, 364
BstV1I	GCAGC	3 cut(s)	18, 38, 532
BstV2I	GAAGAC	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	618
BsuRI	GGCC	5 cut(s)	6, 185, 215, 436, 610
BtgI	CCRYGG	3 cut(s)	611, 629, 667
BtrI	CACGTC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	39, 696
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	3 cut(s)	187, 377, 525
CfoI	GCGC	2 cut(s)	31, 177
Cfr10I	RCCGGY	2 cut(s)	34, 375
Cfr13I	GGNCC	2 cut(s)	4, 725
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	5 cut(s)	290, 612, 618, 630, 668
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	1 cut(s)	695
DpnII	GATC	1 cut(s)	693
EaeI	YGGCCR	3 cut(s)	183, 213, 608
Eam1104I	CTCTTC	1 cut(s)	793
EarI	CTCTTC	1 cut(s)	793
Ecl136II	GAGCTC	1 cut(s)	786
Eco130I	CCWWGG	4 cut(s)	278, 611, 629, 667
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	788
Eco47I	GGWCC	1 cut(s)	725
Eco47III	AGCGCT	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	786
EcoNI	CCTNNNNNAGG	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	164, 425
EcoT14I	CCWWGG	4 cut(s)	278, 611, 629, 667
EcoT38I	GRGCYC	1 cut(s)	788
ErhI	CCWWGG	4 cut(s)	278, 611, 629, 667
FaeI	CATG	5 cut(s)	293, 615, 621, 633, 671
FaiI	YATR	8 cut(s)	291, 613, 619, 631, 669, 683, 702, 707
FaqI	GGGAC	2 cut(s)	611, 738
FatI	CATG	5 cut(s)	289, 611, 617, 629, 667
Fnu4HI	GCNGC	3 cut(s)	27, 32, 521
FokI	GGATG	2 cut(s)	26, 683
FriOI	GRGCYC	1 cut(s)	788
Fsp4HI	GCNGC	3 cut(s)	27, 32, 521
FspBI	CTAG	2 cut(s)	321, 564
GlaI	GCGC	2 cut(s)	30, 176
GluI	GCNGC	3 cut(s)	27, 32, 521
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	5 cut(s)	6, 185, 215, 436, 610
HapII	CCGG	5 cut(s)	35, 182, 197, 212, 376
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	2 cut(s)	31, 177
Hin1II	CATG	5 cut(s)	293, 615, 621, 633, 671
Hin6I	GCGC	2 cut(s)	29, 175
HinP1I	GCGC	2 cut(s)	29, 175
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	2 cut(s)	572, 634
HpaII	CCGG	5 cut(s)	35, 182, 197, 212, 376
HphI	GGTGA	3 cut(s)	329, 484, 495
Hpy188I	TCNGA	3 cut(s)	47, 162, 765
Hpy188III	TCNNGA	1 cut(s)	98
Hpy99I	CGWCG	5 cut(s)	231, 262, 319, 364, 759
HpyAV	CCTTC	5 cut(s)	253, 299, 614, 667, 741
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	293, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	5 cut(s)	293, 615, 621, 633, 671
HspAI	GCGC	2 cut(s)	29, 175
KroI	GCCGGC	1 cut(s)	375
KroNI	GCCGGC	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	693
LguI	GCTCTTC	1 cut(s)	793
Lsp1109I	GCAGC	3 cut(s)	18, 38, 532
LweI	GCATC	3 cut(s)	402, 498, 664
MaeI	CTAG	2 cut(s)	321, 564
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	547, 688
MalI	GATC	1 cut(s)	695
MboI	GATC	1 cut(s)	693
MboII	GAAGA	7 cut(s)	29, 113, 238, 476, 726, 729, 780
MhlI	GDGCHC	1 cut(s)	788
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	53, 123, 126, 166, 280, 357, 426, 767
MreI	CGCCGGCG	1 cut(s)	375
MroNI	GCCGGC	1 cut(s)	375
MseI	TTAA	2 cut(s)	87, 796
MslI	CAYNNNNRTG	2 cut(s)	616, 672
MspI	CCGG	5 cut(s)	35, 182, 197, 212, 376
MspR9I	CCNGG	3 cut(s)	166, 182, 427
MvaI	CCWGG	2 cut(s)	166, 427
MvnI	CGCG	2 cut(s)	177, 364
MwoI	GCNNNNNNNGC	1 cut(s)	376
NaeI	GCCGGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	3 cut(s)	611, 629, 667
NdeII	GATC	1 cut(s)	693
NgoMIV	GCCGGC	1 cut(s)	375
NlaIII	CATG	5 cut(s)	293, 615, 621, 633, 671
NlaIV	GGNNCC	2 cut(s)	602, 726
NmeAIII	GCCGAG	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	793
PdiI	GCCGGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	634
PkrI	GCNGC	3 cut(s)	28, 33, 522
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PshBI	ATTAAT	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	788
Psp6I	CCWGG	2 cut(s)	164, 425
PspGI	CCWGG	2 cut(s)	164, 425
PspN4I	GGNNCC	2 cut(s)	602, 726
PspPI	GGNCC	2 cut(s)	4, 725
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	2 cut(s)	616, 672
SacI	GAGCTC	1 cut(s)	788
SapI	GCTCTTC	1 cut(s)	793
SaqAI	TTAA	2 cut(s)	87, 796
SatI	GCNGC	3 cut(s)	27, 32, 521
Sau3AI	GATC	1 cut(s)	693
Sau96I	GGNCC	2 cut(s)	4, 725
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	3 cut(s)	166, 182, 427
SduI	GDGCHC	1 cut(s)	788
SfaNI	GCATC	3 cut(s)	402, 498, 664
SfuI	TTCGAA	1 cut(s)	462
SgrAI	CRCCGGYG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	2 cut(s)	616, 672
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	2 cut(s)	321, 564
SstI	GAGCTC	1 cut(s)	788
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	3 cut(s)	164, 180, 425
StyI	CCWWGG	4 cut(s)	278, 611, 629, 667
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	3 cut(s)	359, 415, 462
TaqII	GACCGA	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	2 cut(s)	87, 796
Tru9I	TTAA	2 cut(s)	87, 796
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	3 cut(s)	26, 31, 520
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	2 cut(s)	244, 315
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	725
VspI	ATTAAT	1 cut(s)	87
XagI	CCTNNNNNAGG	1 cut(s)	430
XspI	CTAG	2 cut(s)	321, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.