Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005260

Physical Location & Seq

Genomic Coordinates Forward (+)

1160736 .. 1167916

Gene Structure 7181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGCCAGAAGATGGCTACGAATGGAAAAAATATGGACAAAAGTTCATTAAAAATGTTAGAAAGTTCAGGAGCTATTTCAAGTGCCAAAACAGCAATTGTAGAGCCAAGAAGCGAGCCGAGTGGTCGAGCTCAGAGCCTGATGAACTTCGAGTAGTGTATGAAGGGGTGCACAATCACACCGATAATAATGCCTCATCTGCAGGATCGGCTTCACATTCACAGCAGCCGGATTCCTCATCATCTTTAAATCCGAGTACTGATGCAAACCGCTCTCATGACTTATATTGGATGGCGTCCACTTTTGCAGCCATGACTTCAGTTGGCTCATTGGCTGCTCCCAGTGGCCGTGTCGTTGCTGATAAGAAATTTGACGCCTTGTCGTCTCGTGCTTCCATTTCTTCGTTCTCATTCTCCAAGAGGCCCAATGTAGCTCTCAGGAGGACACGTTCCCCCAGAGTCTCCGCCATGGCCAAGGAGTTGCATTTCAACAAGGATGGCTCTGCCATCAAGAAGCTACAAACTGGTGTCAACAAGCTTGCCGACCTTGTTGGGGTTACCCTTGGTCCCAAGGGGAGGAATGTTGTTCTAGAGAGCAAGTACGGTTCCCCCAAAATTGTTAACGATGGTGTGACTGTGGCCAAAGAGGTTGAGTTGGAGGACCCTGTTGAGAACATTGGAGCTAAGTTGGTAAGGCAGGCAGCTGCCAAGACTAATGACTTGGCTGGTGACGGGACAACAACTTCTGTTGTTCTTGCACAAGGTCTTATAGCTGAAGGTGTCAAGGTTGTTGCAGCTGGAGCAAACCCTGTTCTAATCACACGTGGCATTGAGAAGACAACAAAAGCTCTTGTACGTGAGCTTAAGTTGATGTCCAAAGAGGTTGAAGACAGCGAACTAGCAGATGTGGCTGCTGTCAGTGCAGGAAACAACTATGAAGTAGGACAAATGATTGCTGAAGCCTTGAGTAAGGTCGGTCGAAAGGGTGTTGTGACACTTGAAGAGGGGAAAAGTGCTGAGAACAGTCTTTATGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCACCTTACTTCGTCACTGATAGCGAGAAAATGGCTGTTGAATATGAGAACTGCAAGTTGCTTCTTGTTGATAAAAAGATAACAAATGCAAGAGACCTTGTTAACATTTTGGAGGATGCTATAAGAGGAGGATACCCAGTTGTGATAATTGCCGAAGACATTGAACAAGAAGCTCTGGCAACTCTTGTTGTGAACAAGCTCAGAGGATCTCTAAAGATTGCTGCCCTAAAAGCTCCTGGATTTGGAGATCGCAAGAGCCAGTATCTCGATGATATTGCTATATTGACCGGAGGAACTGTGATCAGAGAAGAGGTCGGACTTACATTGGACAGTGTTGGGAAGGAGGTCCTTGGCCACGCTTCAAAGGTGGTGCTTACAAAGGATACCAGCACAATTGTTGGTGATGGAAGTACCCAGGAAGCAGTTAACAAAAGAGTGGCACAAATTAAAAACCTTATTGAGGCTGCAGAGCAGGAGTATGAAAAGGAAAAACTTAGTGAAAGGATTGCAAAACTATCTGGTGGTGTTGCCGTGATACAGGTCGGAGCACAAACTGAGACAGAGCTGAAAGAAAAGAAACTTAGAGTTGAAGATGCTCTCAATGCAACAAAGGCAGCTGTTGAGGAGGGTATTGTTGTTGGAGGAGGATGCACCCTTCTGAGGTTGGCTGCAAAGGTTGATGCAATTAAGAATGCTCTTGATAATGACGAAGAAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTTATTTACCCTCTGAAATTGATAGCCAAGAATGCTGGTGTGAATGGAAGTGTGGTCAGCGAGAAGGTGCTCTCTAGTGACAACTTTAAGTACGGATATAATGCTGCAACTGGAAACTATGAAGATTTAATGGCTGCTGGAATCATTGATCCTACCAAGGTGGTGAGATGTTGCCTGGAGCATGCTGCCTCTGTGGCAAAAACTTTCTTAATGTCGGACTGTGTAGTTGTTGAGATCAAGGAGCCGGAGCCAGTGCCTGCTGCAAACCCCATGGACAACTCAGGAATATTGCGATTCCAGCTTGGTGTTCTTCTACTCCAAATCCCTCTATTGGGTGACTCATTGGAAAGTCCTTGTGTTACCCTTAAGAATGAAGAGAGGAAACCAGGAATATTTCAGGCTTCAAGTTTGTATCTCAGCGACGGATGTGGGGAAGAAATCATCCCCTACCGTGTAGCAGCCGCCTGTTGTGGGGAAGAAGTTATCCTGTCAAAACAAGGGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

771

Amino Acids

82.75

Weight (kDa)

6.05

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	3 - 59	9.5e-20	WRKY DNA -binding domain
Cpn60_TCP1	PF00118	179 - 681	8.2e-83	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT1G55490 AT3G13470 AT5G56500 AT5G56500
fragaria_vesca	FvH4_3g45800 FvH4_3g45800 FvH4_3g45800 FvH4_3g45800
malus_domestica	MD03G1002900.v1.1 MD11G1002700.v1.1
prunus_persica	Prupe.6G002500_v2.0.a1 Prupe.6G002500_v2.0.a1
pyrus_communis	pycom03g00280 pycom11g00250
rosa_chinensis	RchiOBHm_Chr5g0083881
rosa_laevigata	RLG00000037061
rosa_multiflora	Rmu_sc0001287.1_g000043
rosa_roxburghii	Rroxscaffold_1G00000710
rosa_rugosa	Rorug05G0487100 Rorug05G0487200
rosa_samantha	Rh5AG540000 Rh5BG565200 Rh5CG587000 Rh5DG573600
rosa_wichuraiana	Rw5G050210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	270
AciI	CCGC	3 cut(s)	268, 462, 2271
AclWI	GGATC	3 cut(s)	211, 1279, 1952
AcoI	YGGCCR	4 cut(s)	343, 468, 636, 1417
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	3 cut(s)	300, 792, 975
AcvI	CACGTG	1 cut(s)	821
AcyI	GRCGYC	2 cut(s)	293, 372
AfaI	GTAC	5 cut(s)	256, 599, 852, 1477, 1901
AfiI	CCNNNNNNNGG	9 cut(s)	11, 550, 573, 1307, 1525, 1725, 2140, 2141, 2280
AflII	CTTAAG	2 cut(s)	860, 2174
AflIII	ACRYGT	2 cut(s)	443, 818
AhdI	GACNNNNNGTC	1 cut(s)	376
AjnI	CCWGG	4 cut(s)	1300, 1479, 1983, 2194
AjuI	GAANNNNNNNTTGG	2 cut(s)	1767, 1799
AloI	GAACNNNNNNTCC	2 cut(s)	430, 462
Alw21I	GWGCWC	5 cut(s)	131, 171, 1615, 1810, 1881
Alw26I	GTCTC	4 cut(s)	387, 463, 1152, 1616
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	211, 1279, 1952
AlwNI	CAGNNNCTG	2 cut(s)	137, 2066
AoxI	GGCC	5 cut(s)	343, 419, 468, 636, 1417
ApaLI	GTGCAC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	4 cut(s)	420, 563, 658, 1411
AsuHPI	GGTGA	5 cut(s)	737, 1059, 1478, 1984, 2156
AvaII	GGWCC	3 cut(s)	563, 658, 1411
BaeGI	GKGCMC	1 cut(s)	171
BalI	TGGCCA	3 cut(s)	470, 638, 1419
BanII	GRGCYC	2 cut(s)	131, 1810
BauI	CACGAG	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	821
BbsI	GAAGAC	3 cut(s)	839, 891, 1227
Bbv12I	GWGCWC	5 cut(s)	131, 171, 1615, 1810, 1881
BccI	CCATC	6 cut(s)	5, 283, 488, 512, 617, 1463
BceAI	ACGGC	2 cut(s)	330, 1580
BcgI	CGANNNNNNTGC	6 cut(s)	170, 204, 1034, 1068, 1322, 1356
BciT130I	CCWGG	4 cut(s)	1302, 1481, 1985, 2196
BciVI	GTATCC	2 cut(s)	1190, 1441
BclI	TGATCA	1 cut(s)	1365
BcoDI	GTCTC	4 cut(s)	387, 463, 1152, 1616
BfaI	CTAG	3 cut(s)	587, 896, 1884
BfmI	CTRYAG	3 cut(s)	198, 1530, 2312
BfrI	CTTAAG	2 cut(s)	860, 2174
BfuI	GTATCC	2 cut(s)	1190, 1441
BglI	GCCNNNNNGGC	1 cut(s)	2003
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	1302, 1481, 1985, 2196
Bme18I	GGWCC	3 cut(s)	563, 658, 1411
BmeRI	GACNNNNNGTC	1 cut(s)	376
BmgT120I	GGNCC	4 cut(s)	420, 563, 658, 1411
BmiI	GGNNCC	5 cut(s)	565, 604, 660, 2052, 2058
BmrFI	CCNGG	4 cut(s)	1302, 1481, 1985, 2196
BmrI	ACTGGG	2 cut(s)	333, 1196
BmsI	GCATC	5 cut(s)	250, 1171, 1648, 1703, 1735
BmuI	ACTGGG	2 cut(s)	333, 1196
BpiI	GAAGAC	3 cut(s)	839, 891, 1227
BpmI	CTGGAG	2 cut(s)	816, 2006
BpuEI	CTTGAG	1 cut(s)	982
BsaAI	YACGTR	2 cut(s)	821, 854
BsaHI	GRCGYC	2 cut(s)	293, 372
BsaI	GGTCTC	1 cut(s)	1152
BsaJI	CCNNGG	8 cut(s)	465, 471, 559, 567, 1414, 1479, 1965, 2079
BsaWI	WCCGGW	1 cut(s)	1352
BsaXI	ACNNNNNCTCC	4 cut(s)	430, 460, 1347, 1377
Bsc4I	CCNNNNNNNGG	9 cut(s)	11, 550, 573, 1307, 1525, 1725, 2140, 2141, 2280
Bse1I	ACTGG	6 cut(s)	339, 526, 1202, 1324, 1924, 2060
BseBI	CCWGG	4 cut(s)	1302, 1481, 1985, 2196
BseDI	CCNNGG	8 cut(s)	465, 471, 559, 567, 1414, 1479, 1965, 2079
BseGI	GGATG	6 cut(s)	294, 499, 1186, 1718, 2240, 2250
BseLI	CCNNNNNNNGG	9 cut(s)	11, 550, 573, 1307, 1525, 1725, 2140, 2141, 2280
BseMII	CTCAG	8 cut(s)	144, 448, 1005, 1279, 1611, 1715, 2103, 2239
BseNI	ACTGG	6 cut(s)	339, 526, 1202, 1324, 1924, 2060
BseRI	GAGGAG	3 cut(s)	1206, 1703, 1722
BseSI	GKGCMC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	939
Bsh1285I	CGRYCG	1 cut(s)	976
BshFI	GGCC	5 cut(s)	345, 421, 470, 638, 1419
BsiEI	CGRYCG	1 cut(s)	976
BsiHKAI	GWGCWC	5 cut(s)	131, 171, 1615, 1810, 1881
BsiSI	CCGG	3 cut(s)	227, 1353, 2054
BslFI	GGGAC	2 cut(s)	549, 745
BslI	CCNNNNNNNGG	9 cut(s)	11, 550, 573, 1307, 1525, 1725, 2140, 2141, 2280
BsmAI	GTCTC	4 cut(s)	387, 463, 1152, 1616
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	549, 745
BsmI	GAATGC	3 cut(s)	1047, 1762, 1846
BsnI	GGCC	5 cut(s)	345, 421, 470, 638, 1419
Bso31I	GGTCTC	1 cut(s)	1152
Bsp1286I	GDGCHC	5 cut(s)	131, 171, 1615, 1810, 1881
Bsp143I	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
Bsp19I	CCATGG	2 cut(s)	465, 2079
BspACI	CCGC	3 cut(s)	268, 462, 2271
BspANI	GGCC	5 cut(s)	345, 421, 470, 638, 1419
BspCNI	CTCAG	8 cut(s)	143, 447, 1006, 1278, 1612, 1716, 2102, 2238
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	5 cut(s)	565, 604, 660, 2052, 2058
BspMAI	CTGCAG	2 cut(s)	202, 1534
BspPI	GGATC	3 cut(s)	211, 1279, 1952
BspTI	CTTAAG	2 cut(s)	860, 2174
BspTNI	GGTCTC	1 cut(s)	1152
BsrBI	CCGCTC	1 cut(s)	270
BsrI	ACTGG	6 cut(s)	339, 526, 1202, 1324, 1924, 2060
BssECI	CCNNGG	8 cut(s)	465, 471, 559, 567, 1414, 1479, 1965, 2079
BssMI	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
BssNI	GRCGYC	2 cut(s)	293, 372
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	7 cut(s)	465, 471, 559, 567, 1414, 1965, 2079
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	4 cut(s)	1302, 1481, 1985, 2196
Bst4CI	ACNGT	7 cut(s)	602, 634, 1022, 1363, 1397, 2030, 2261
Bst6I	CTCTTC	3 cut(s)	993, 1368, 2178
BstACI	GRCGYC	2 cut(s)	293, 372
BstAFI	CTTAAG	2 cut(s)	860, 2174
BstBAI	YACGTR	2 cut(s)	821, 854
BstC8I	GCNNGC	5 cut(s)	114, 537, 696, 1992, 2067
BstDSI	CCRYGG	2 cut(s)	465, 2079
BstEII	GGTNACC	1 cut(s)	553
BstENI	CCTNNNNNAGG	1 cut(s)	1523
BstF5I	GGATG	6 cut(s)	294, 499, 1186, 1718, 2240, 2250
BstKTI	GATC	7 cut(s)	206, 1054, 1274, 1315, 1368, 1960, 2046
BstMAI	GTCTC	4 cut(s)	387, 463, 1152, 1616
BstMBI	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
BstMCI	CGRYCG	1 cut(s)	976
BstNI	CCWGG	4 cut(s)	1302, 1481, 1985, 2196
BstNSI	RCATGY	1 cut(s)	1994
BstPI	GGTNACC	1 cut(s)	553
BstSCI	CCNGG	4 cut(s)	1300, 1479, 1983, 2194
BstSFI	CTRYAG	3 cut(s)	198, 1530, 2312
BstSLI	GKGCMC	1 cut(s)	171
BstV2I	GAAGAC	3 cut(s)	839, 891, 1227
BstX2I	RGATCY	1 cut(s)	1271
BstYI	RGATCY	1 cut(s)	1271
BsuI	GTATCC	2 cut(s)	1190, 1441
BsuRI	GGCC	5 cut(s)	345, 421, 470, 638, 1419
BtgI	CCRYGG	2 cut(s)	465, 2079
BtsCI	GGATG	6 cut(s)	294, 499, 1186, 1718, 2240, 2250
BtsIMutI	CAGTG	5 cut(s)	346, 922, 1080, 1402, 2067
Cac8I	GCNNGC	5 cut(s)	114, 537, 696, 1992, 2067
CaiI	CAGNNNCTG	2 cut(s)	137, 2066
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	4 cut(s)	420, 563, 658, 1411
CseI	GACGC	2 cut(s)	282, 380
Csp6I	GTAC	5 cut(s)	255, 598, 851, 1476, 1900
CviAII	CATG	5 cut(s)	275, 310, 466, 1991, 2080
CviQI	GTAC	5 cut(s)	255, 598, 851, 1476, 1900
DpnI	GATC	7 cut(s)	205, 1053, 1273, 1314, 1367, 1959, 2045
DpnII	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
DraI	TTTAAA	1 cut(s)	246
DriI	GACNNNNNGTC	1 cut(s)	376
EaeI	YGGCCR	4 cut(s)	343, 468, 636, 1417
Eam1104I	CTCTTC	3 cut(s)	993, 1368, 2178
Eam1105I	GACNNNNNGTC	1 cut(s)	376
EarI	CTCTTC	3 cut(s)	993, 1368, 2178
EciI	GGCGGA	1 cut(s)	451
Ecl136II	GAGCTC	2 cut(s)	129, 1808
Eco130I	CCWWGG	7 cut(s)	465, 471, 559, 567, 1414, 1965, 2079
Eco24I	GRGCYC	2 cut(s)	131, 1810
Eco31I	GGTCTC	1 cut(s)	1152
Eco47I	GGWCC	3 cut(s)	563, 658, 1411
Eco53kI	GAGCTC	2 cut(s)	129, 1808
Eco57I	CTGAAG	3 cut(s)	300, 792, 975
Eco72I	CACGTG	1 cut(s)	821
Eco91I	GGTNACC	1 cut(s)	553
EcoICRI	GAGCTC	2 cut(s)	129, 1808
EcoNI	CCTNNNNNAGG	1 cut(s)	1523
EcoO109I	RGGNCCY	2 cut(s)	658, 1411
EcoO65I	GGTNACC	1 cut(s)	553
EcoRII	CCWGG	4 cut(s)	1300, 1479, 1983, 2194
EcoT14I	CCWWGG	7 cut(s)	465, 471, 559, 567, 1414, 1965, 2079
EcoT38I	GRGCYC	2 cut(s)	131, 1810
ErhI	CCWWGG	7 cut(s)	465, 471, 559, 567, 1414, 1965, 2079
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	5 cut(s)	278, 313, 469, 1994, 2083
FaqI	GGGAC	2 cut(s)	549, 745
FatI	CATG	5 cut(s)	274, 309, 465, 1990, 2079
FbaI	TGATCA	1 cut(s)	1365
FokI	GGATG	6 cut(s)	301, 506, 1193, 1725, 2237, 2247
FriOI	GRGCYC	2 cut(s)	131, 1810
FspBI	CTAG	3 cut(s)	587, 896, 1884
GsuI	CTGGAG	2 cut(s)	816, 2006
HaeIII	GGCC	5 cut(s)	345, 421, 470, 638, 1419
HapII	CCGG	3 cut(s)	227, 1353, 2054
HgaI	GACGC	2 cut(s)	282, 380
Hin1I	GRCGYC	2 cut(s)	293, 372
Hin1II	CATG	5 cut(s)	278, 313, 469, 1994, 2083
HincII	GTYRAC	4 cut(s)	529, 619, 1168, 1492
HindII	GTYRAC	4 cut(s)	529, 619, 1168, 1492
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	5 cut(s)	230, 456, 1950, 2103, 2147
HpaI	GTTAAC	3 cut(s)	619, 1168, 1492
HpaII	CCGG	3 cut(s)	227, 1353, 2054
HphI	GGTGA	5 cut(s)	737, 1059, 1478, 1984, 2156
Hpy166II	GTNNAC	7 cut(s)	169, 297, 529, 619, 1168, 1258, 1492
Hpy188I	TCNGA	9 cut(s)	133, 252, 1268, 1370, 1382, 1610, 1725, 1824, 2026
Hpy188III	TCNNGA	8 cut(s)	67, 275, 436, 508, 587, 1331, 1763, 2091
Hpy8I	GTNNAC	7 cut(s)	169, 297, 529, 619, 1168, 1258, 1492
Hpy99I	CGWCG	1 cut(s)	2234
HpyAV	CCTTC	6 cut(s)	155, 767, 1031, 1399, 1730, 1867
HpyCH4III	ACNGT	7 cut(s)	602, 634, 1022, 1363, 1397, 2030, 2261
HpyCH4IV	ACGT	3 cut(s)	445, 820, 853
HpySE526I	ACGT	3 cut(s)	445, 820, 853
Hsp92I	GRCGYC	2 cut(s)	293, 372
Hsp92II	CATG	5 cut(s)	278, 313, 469, 1994, 2083
Ksp22I	TGATCA	1 cut(s)	1365
KspAI	GTTAAC	3 cut(s)	619, 1168, 1492
Kzo9I	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
LweI	GCATC	5 cut(s)	250, 1171, 1648, 1703, 1735
MaeI	CTAG	3 cut(s)	587, 896, 1884
MaeII	ACGT	3 cut(s)	445, 820, 853
MaeIII	GTNAC	8 cut(s)	553, 628, 725, 988, 1078, 1886, 2144, 2167
MalI	GATC	7 cut(s)	205, 1053, 1273, 1314, 1367, 1959, 2045
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
MfeI	CAATTG	2 cut(s)	94, 1458
MflI	RGATCY	1 cut(s)	1271
MhlI	GDGCHC	5 cut(s)	131, 171, 1615, 1810, 1881
MlsI	TGGCCA	3 cut(s)	470, 638, 1419
MluCI	AATT	9 cut(s)	94, 365, 612, 1046, 1212, 1458, 1509, 1749, 1826
MluNI	TGGCCA	3 cut(s)	470, 638, 1419
MlyI	GAGTC	2 cut(s)	465, 2141
MmeI	TCCRAC	6 cut(s)	633, 1360, 1588, 1684, 1765, 2004
Mox20I	TGGCCA	3 cut(s)	470, 638, 1419
MscI	TGGCCA	3 cut(s)	470, 638, 1419
Msp20I	TGGCCA	3 cut(s)	470, 638, 1419
MspA1I	CMGCKG	3 cut(s)	701, 794, 1682
MspCI	CTTAAG	2 cut(s)	860, 2174
MspI	CCGG	3 cut(s)	227, 1353, 2054
MspR9I	CCNGG	4 cut(s)	1302, 1481, 1985, 2196
MunI	CAATTG	2 cut(s)	94, 1458
Mva1269I	GAATGC	3 cut(s)	1047, 1762, 1846
MvaI	CCWGG	4 cut(s)	1302, 1481, 1985, 2196
NcoI	CCATGG	2 cut(s)	465, 2079
NdeII	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
NlaIII	CATG	5 cut(s)	278, 313, 469, 1994, 2083
NlaIV	GGNNCC	5 cut(s)	565, 604, 660, 2052, 2058
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	6 cut(s)	628, 725, 988, 1078, 1886, 2144
NspI	RCATGY	1 cut(s)	1994
PaeI	GCATGC	1 cut(s)	1994
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	3 cut(s)	1047, 1762, 1846
PfeI	GAWTC	3 cut(s)	230, 1950, 2103
PflMI	CCANNNNNTGG	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	1300
PleI	GAGTC	2 cut(s)	464, 2141
PmaCI	CACGTG	1 cut(s)	821
PmlI	CACGTG	1 cut(s)	821
PpsI	GAGTC	2 cut(s)	464, 2141
Ppu21I	YACGTR	2 cut(s)	821, 854
PpuMI	RGGWCCY	2 cut(s)	658, 1411
Psp124BI	GAGCTC	2 cut(s)	131, 1810
Psp5II	RGGWCCY	2 cut(s)	658, 1411
Psp6I	CCWGG	4 cut(s)	1300, 1479, 1983, 2194
PspCI	CACGTG	1 cut(s)	821
PspEI	GGTNACC	1 cut(s)	553
PspGI	CCWGG	4 cut(s)	1300, 1479, 1983, 2194
PspN4I	GGNNCC	5 cut(s)	565, 604, 660, 2052, 2058
PspPI	GGNCC	4 cut(s)	420, 563, 658, 1411
PspPPI	RGGWCCY	2 cut(s)	658, 1411
PstI	CTGCAG	2 cut(s)	202, 1534
PstNI	CAGNNNCTG	2 cut(s)	137, 2066
PsuI	RGATCY	1 cut(s)	1271
PvuII	CAGCTG	3 cut(s)	701, 794, 1682
RsaI	GTAC	5 cut(s)	256, 599, 852, 1477, 1901
RsaNI	GTAC	5 cut(s)	255, 598, 851, 1476, 1900
SacI	GAGCTC	2 cut(s)	131, 1810
Sau3AI	GATC	7 cut(s)	203, 1051, 1271, 1312, 1365, 1957, 2043
Sau96I	GGNCC	4 cut(s)	420, 563, 658, 1411
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	2 cut(s)	465, 2141
ScrFI	CCNGG	4 cut(s)	1302, 1481, 1985, 2196
SduI	GDGCHC	5 cut(s)	131, 171, 1615, 1810, 1881
SfaNI	GCATC	5 cut(s)	250, 1171, 1648, 1703, 1735
SfcI	CTRYAG	3 cut(s)	198, 1530, 2312
SinI	GGWCC	3 cut(s)	563, 658, 1411
SmlI	CTYRAG	3 cut(s)	860, 961, 2174
SmoI	CTYRAG	3 cut(s)	860, 961, 2174
SphI	GCATGC	1 cut(s)	1994
Sse9I	AATT	9 cut(s)	94, 365, 612, 1046, 1212, 1458, 1509, 1749, 1826
SsiI	CCGC	3 cut(s)	268, 462, 2271
SspI	AATATT	2 cut(s)	2097, 2202
SspMI	CTAG	3 cut(s)	587, 896, 1884
SstI	GAGCTC	2 cut(s)	131, 1810
StyD4I	CCNGG	4 cut(s)	1300, 1479, 1983, 2194
StyI	CCWWGG	7 cut(s)	465, 471, 559, 567, 1414, 1965, 2079
TaaI	ACNGT	7 cut(s)	602, 634, 1022, 1363, 1397, 2030, 2261
TaiI	ACGT	3 cut(s)	448, 823, 856
TaqI	TCGA	4 cut(s)	125, 148, 976, 1332
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	9 cut(s)	94, 365, 612, 1046, 1212, 1458, 1509, 1749, 1826
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	1 cut(s)	2273
TfiI	GAWTC	3 cut(s)	230, 1950, 2103
TscAI	CASTG	5 cut(s)	346, 922, 1087, 1402, 2067
TseFI	GTSAC	6 cut(s)	628, 725, 988, 1078, 1886, 2144
Tsp45I	GTSAC	6 cut(s)	628, 725, 988, 1078, 1886, 2144
TspDTI	ATGAA	7 cut(s)	34, 156, 174, 948, 1560, 1944, 2196
TspGWI	ACGGA	2 cut(s)	1917, 2247
TspRI	CASTG	5 cut(s)	346, 922, 1087, 1402, 2067
Van91I	CCANNNNNTGG	1 cut(s)	11
Vha464I	CTTAAG	2 cut(s)	860, 2174
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	563, 658, 1411
XagI	CCTNNNNNAGG	1 cut(s)	1523
XapI	RAATTY	1 cut(s)	365
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	1994
XspI	CTAG	3 cut(s)	587, 896, 1884
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.