AT1G55535

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011299
Physical Location & Seq
Reverse (-)
20731589 .. 20734066
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55535.3

Sequence Viewer

Length: 783 bp
ATGATGCTTTGTGGTTCTTTACGAGATCGAATTCATCCTTGGCTTCGCGATTATGTTAAACTCCAATCTCTCGCCGTCTTCCTTATTTATGCTCAGATTGGGTGCGCGCTAATCGGATCACTAGGAGCATTATACAATGGAGTTTTGTTGATAAATTTGGCGATTGCTTTGTTCGCGCTTGTTGCTATCGAGAGTAATAGCCAAAGTCTCGGCCGCACCTATGCGGTTCTTCTTTTCTGCGCTCTTCTTCTTGATATCTCATGGTTCATACTTTTCACCGAAGAGATTTGGAGCATTTCAGCTGAGACGTATGGAACGTTTTTCATATTTTCAGTGAAACTTACAATGGCGATGGAAATGATTGGTTTCTTTGTGAGGCTATCATCCTCGCTTTTATGGTTTCAGATTTATAGGCTGGGGGCTGCTATCGTGGACACTTCACTTCCTCGTGAAACAGATTCGGATTTACGAAATAGCTTCTTGAATCCACCAACTCCTGCTATAGCTAGACAATGTTCAGGTGCTGAAGAAATCTTGGGAGGTTCTATCTACGACCCTGCCTACTACACCTCTCTATTTGAAGAAAGCCAAACCAATATAAATTCACCCAAAGCTACTCAGGTAAATCATTATTCAGCTGGGAACAATGGATCACCATCTGCTGCAGAGGCCTCTCATATTAAGTCTCCCATATTCAGATCCTTGCATTCAATTGATGAAGAGAAGGGTTTGAAGAAACCGGAAGAAATGTGTTTGAAGCAAACGGGGATGGCTTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.72

Weight (kDa)

5.4

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 48, 107, 176
AciI CCGC 2 cut(s) 214, 224
AclI AACGTT 1 cut(s) 317
AclWI GGATC 3 cut(s) 124, 658, 693
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 3 cut(s) 30, 154, 601
AcuI CTGAAG 1 cut(s) 546
AgsI TTSAA 6 cut(s) 484, 581, 711, 733, 757, 777
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 5 cut(s) 302, 477, 506, 614, 638
AluI AGCT 5 cut(s) 302, 477, 506, 614, 638
Alw26I GTCTC 3 cut(s) 212, 299, 690
AlwI GGATC 3 cut(s) 124, 658, 693
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 2 cut(s) 211, 669
ApeKI GCWGC 2 cut(s) 422, 662
ApoI RAATTY 3 cut(s) 30, 154, 601
AspLEI GCGC 4 cut(s) 107, 109, 178, 242
AsuHPI GGTGA 3 cut(s) 268, 597, 645
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 409, 649
BccI CCATC 3 cut(s) 346, 664, 763
BceAI ACGGC 1 cut(s) 59
BcoDI GTCTC 3 cut(s) 212, 299, 690
BfaI CTAG 2 cut(s) 122, 507
BfmI CTRYAG 2 cut(s) 501, 663
BisI GCNGC 3 cut(s) 214, 423, 663
BlsI GCNGC 3 cut(s) 215, 424, 664
BpiI GAAGAC 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 655
BsaJI CCNNGG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 739
Bse8I GATNNNNATC 1 cut(s) 655
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 3 cut(s) 34, 383, 774
BseJI GATNNNNATC 1 cut(s) 655
BseMII CTCAG 3 cut(s) 107, 294, 632
BsePI GCGCGC 1 cut(s) 105
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 409, 649
BseYI CCCAGC 2 cut(s) 415, 638
Bsh1236I CGCG 3 cut(s) 48, 107, 176
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 213, 671
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 740
BsmAI GTCTC 3 cut(s) 212, 299, 690
BsmBI CGTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 2 cut(s) 213, 671
Bsp143I GATC 4 cut(s) 25, 116, 650, 698
Bsp68I TCGCGA 1 cut(s) 48
BspACI CCGC 2 cut(s) 214, 224
BspANI GGCC 2 cut(s) 213, 671
BspCNI CTCAG 3 cut(s) 106, 295, 631
BspFNI CGCG 3 cut(s) 48, 107, 176
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 3 cut(s) 124, 658, 693
BspQI GCTCTTC 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 38
BssHII GCGCGC 1 cut(s) 105
BssMI GATC 4 cut(s) 25, 116, 650, 698
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 447
Bst6I CTCTTC 3 cut(s) 249, 276, 714
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 93, 303, 618
BstF5I GGATG 3 cut(s) 34, 383, 774
BstFNI CGCG 3 cut(s) 48, 107, 176
BstHHI GCGC 4 cut(s) 107, 109, 178, 242
BstKTI GATC 4 cut(s) 28, 119, 653, 701
BstMAI GTCTC 3 cut(s) 212, 299, 690
BstMBI GATC 4 cut(s) 25, 116, 650, 698
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 3 cut(s) 173, 182, 668
BstSFI CTRYAG 2 cut(s) 501, 663
BstUI CGCG 3 cut(s) 48, 107, 176
BstV1I GCAGC 2 cut(s) 409, 649
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 213, 671
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 3 cut(s) 34, 383, 774
BtsIMutI CAGTG 1 cut(s) 339
BtuMI TCGCGA 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 524
CfoI GCGC 4 cut(s) 107, 109, 178, 242
CviAII CATG 1 cut(s) 261
DdeI CTNAG 3 cut(s) 93, 303, 618
DpnI GATC 4 cut(s) 27, 118, 652, 700
DpnII GATC 4 cut(s) 25, 116, 650, 698
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 249, 276, 714
EarI CTCTTC 3 cut(s) 249, 276, 714
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 671
Eco32I GATATC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 30
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 1 cut(s) 264
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 214, 423, 663
FokI GGATG 2 cut(s) 21, 370
Fsp4HI GCNGC 3 cut(s) 214, 423, 663
FspBI CTAG 2 cut(s) 122, 507
GlaI GCGC 4 cut(s) 106, 108, 177, 241
GluI GCNGC 3 cut(s) 214, 423, 663
GsaI CCCAGC 2 cut(s) 419, 642
HaeIII GGCC 2 cut(s) 213, 671
HapII CCGG 1 cut(s) 740
HhaI GCGC 4 cut(s) 107, 109, 178, 242
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 4 cut(s) 105, 107, 176, 240
HinP1I GCGC 4 cut(s) 105, 107, 176, 240
HinfI GANTC 2 cut(s) 458, 484
HpaII CCGG 1 cut(s) 740
HphI GGTGA 3 cut(s) 268, 597, 645
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 5 cut(s) 96, 116, 405, 463, 698
Hpy188III TCNNGA 5 cut(s) 47, 190, 251, 449, 481
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 1 cut(s) 718
HpyCH4IV ACGT 2 cut(s) 308, 317
HpyCH4V TGCA 2 cut(s) 665, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 182, 668
HpyF3I CTNAG 3 cut(s) 93, 303, 618
HpySE526I ACGT 2 cut(s) 308, 317
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 4 cut(s) 105, 107, 176, 240
Kzo9I GATC 4 cut(s) 25, 116, 650, 698
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 125, 291
LpnPI CCDG 7 cut(s) 401, 504, 510, 570, 605, 624, 753
Lsp1109I GCAGC 2 cut(s) 409, 649
MaeI CTAG 2 cut(s) 122, 507
MaeII ACGT 2 cut(s) 308, 317
MalI GATC 4 cut(s) 27, 118, 652, 700
MboI GATC 4 cut(s) 25, 116, 650, 698
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 698
MluCI AATT 4 cut(s) 30, 154, 601, 711
MnlI CCTC 7 cut(s) 369, 397, 456, 533, 580, 661, 682
MseI TTAA 2 cut(s) 57, 681
MspA1I CMGCKG 2 cut(s) 302, 638
MspI CCGG 1 cut(s) 740
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 706
MvnI CGCG 3 cut(s) 48, 107, 176
MwoI GCNNNNNNNGC 3 cut(s) 173, 182, 668
NdeII GATC 4 cut(s) 25, 116, 650, 698
NlaIII CATG 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 189
NruI TCGCGA 1 cut(s) 48
PauI GCGCGC 1 cut(s) 105
PceI AGGCCT 1 cut(s) 671
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 1 cut(s) 706
PfeI GAWTC 2 cut(s) 458, 484
PkrI GCNGC 3 cut(s) 215, 424, 664
Psp1406I AACGTT 1 cut(s) 317
PspFI CCCAGC 2 cut(s) 415, 638
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 698
PteI GCGCGC 1 cut(s) 105
PvuII CAGCTG 2 cut(s) 302, 638
RruI TCGCGA 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 57, 681
SatI GCNGC 3 cut(s) 214, 423, 663
Sau3AI GATC 4 cut(s) 25, 116, 650, 698
SfcI CTRYAG 2 cut(s) 501, 663
Sse9I AATT 4 cut(s) 30, 154, 601, 711
SseBI AGGCCT 1 cut(s) 671
SsiI CCGC 2 cut(s) 214, 224
SspMI CTAG 2 cut(s) 122, 507
StuI AGGCCT 1 cut(s) 671
StyI CCWWGG 1 cut(s) 38
TaiI ACGT 2 cut(s) 311, 320
TaqI TCGA 2 cut(s) 28, 189
TasI AATT 4 cut(s) 30, 154, 601, 711
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 2 cut(s) 458, 484
Tru1I TTAA 2 cut(s) 57, 681
Tru9I TTAA 2 cut(s) 57, 681
TscAI CASTG 1 cut(s) 339
TseI GCWGC 2 cut(s) 422, 662
TspDTI ATGAA 4 cut(s) 23, 256, 313, 732
TspRI CASTG 1 cut(s) 339
XapI RAATTY 3 cut(s) 30, 154, 601
XspI CTAG 2 cut(s) 122, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.