Rroxscaffold_1G00000610

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011299
Physical Location & Seq
Forward (+)
1046916 .. 1051073
4158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000610.1

Sequence Viewer

Length: 576 bp
ATGATGCTTTGCGAAGCATTGCGTGATCGAATACAGGCATGGCTTCGTGACTACGACAGGCTTCAATATTTGGCCGTCATCCTCCTCTACATTCAGATTGCGTGCGCATTGCTAGGATCGCTGGGAGCATTGTACAACGGAGTGTTGCTGATCAATCTGGCGATTGCATTGTTCGCTCTTGTCGCAATCGAAAGTAGCAGTCAGAGCCTCGGCCGCACATACGCCGTCCTTCTCGTCTGCGCCATCTTCCTCGATATCTTCTGGTTGGGCCTTTCCTACGTAGTAGACCCTGCACCAACTCCTAGAGATGCAGATTTTGATTTACGAAATAGTTTCTTGAGTCCAACTACTCCTACGCCTGCTGTACTTAGACAAACCTCCGATTCTAGTGATGCCGTAGGAGGCTCTATCTATGATCCAGCTTATTACTCATCACTCTTTGAAGAGAGCCAGGGAAAATGTTTCAGTGGCAATGGATCTACTTCTGCTGCTGAAGCTTGTAAGGTGAAACCATCTGTAGTCAGATCTTTTCAGTTCATAGATGAGGAGAAGACAGCAAGCCAGCATTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.82

Weight (kDa)

4.67

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccI GTMKAC 1 cut(s) 285
AciI CCGC 1 cut(s) 214
AclWI GGATC 3 cut(s) 124, 410, 484
AcoI YGGCCR 2 cut(s) 72, 211
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 2 cut(s) 134, 366
AgsI TTSAA 2 cut(s) 65, 443
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 2 cut(s) 422, 497
AluI AGCT 2 cut(s) 422, 497
AlwI GGATC 3 cut(s) 124, 410, 484
AoxI GGCC 3 cut(s) 72, 211, 268
ApeKI GCWGC 1 cut(s) 488
AspLEI GCGC 2 cut(s) 107, 242
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 557
BbvI GCAGC 1 cut(s) 475
BccI CCATC 2 cut(s) 251, 520
BceAI ACGGC 3 cut(s) 59, 209, 380
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 1 cut(s) 150
BfaI CTAG 3 cut(s) 113, 303, 387
BfmI CTRYAG 1 cut(s) 516
BglII AGATCT 1 cut(s) 524
BisI GCNGC 2 cut(s) 214, 489
BlsI GCNGC 2 cut(s) 215, 490
Bme1390I CCNGG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 2 cut(s) 298, 382
BpiI GAAGAC 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 208, 451
Bse3DI GCAATG 3 cut(s) 17, 107, 478
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 208, 451
BseGI GGATG 1 cut(s) 78
BseMI GCAATG 3 cut(s) 17, 107, 478
BseRI GAGGAG 2 cut(s) 74, 560
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 475
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 74, 213, 270
BsiEI CGRYCG 1 cut(s) 214
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 74, 213, 270
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 6 cut(s) 25, 116, 150, 415, 476, 524
BspACI CCGC 1 cut(s) 214
BspANI GGCC 3 cut(s) 74, 213, 270
BspPI GGATC 3 cut(s) 124, 410, 484
BsrDI GCAATG 3 cut(s) 17, 107, 478
BsrGI TGTACA 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 208, 451
BssMI GATC 6 cut(s) 25, 116, 150, 415, 476, 524
Bst2UI CCWGG 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 438
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 280
BstC8I GCNNGC 4 cut(s) 103, 360, 559, 563
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 107, 242
BstKTI GATC 6 cut(s) 28, 119, 153, 418, 479, 527
BstMBI GATC 6 cut(s) 25, 116, 150, 415, 476, 524
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 6 cut(s) 118, 173, 182, 204, 213, 494
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 516
BstSNI TACGTA 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 557
BstX2I RGATCY 2 cut(s) 476, 524
BstYI RGATCY 2 cut(s) 476, 524
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 3 cut(s) 74, 213, 270
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 4 cut(s) 103, 360, 559, 563
CfoI GCGC 2 cut(s) 107, 242
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 133, 365
CviAII CATG 1 cut(s) 39
CviQI GTAC 2 cut(s) 133, 365
DdeI CTNAG 1 cut(s) 368
DpnI GATC 6 cut(s) 27, 118, 152, 417, 478, 526
DpnII GATC 6 cut(s) 25, 116, 150, 415, 476, 524
EaeI YGGCCR 2 cut(s) 72, 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EclXI CGGCCG 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 280
Eco32I GATATC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 256
FaeI CATG 1 cut(s) 42
FaiI YATR 4 cut(s) 40, 220, 414, 539
FatI CATG 1 cut(s) 38
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 214, 489
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 214, 489
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 3 cut(s) 113, 303, 387
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 106, 241
GluI GCNGC 2 cut(s) 214, 489
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 3 cut(s) 74, 213, 270
HhaI GCGC 2 cut(s) 107, 242
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 2 cut(s) 105, 240
HinP1I GCGC 2 cut(s) 105, 240
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 2 cut(s) 340, 383
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 4 cut(s) 96, 204, 382, 524
Hpy188III TCNNGA 2 cut(s) 47, 337
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 167, 293, 311
HpyF10VI GCNNNNNNNGC 6 cut(s) 118, 173, 182, 204, 213, 494
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 2 cut(s) 105, 240
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 6 cut(s) 25, 116, 150, 415, 476, 524
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 2 cut(s) 298, 382
MaeI CTAG 3 cut(s) 113, 303, 387
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 47
MalI GATC 6 cut(s) 27, 118, 152, 417, 478, 526
MboI GATC 6 cut(s) 25, 116, 150, 415, 476, 524
MboII GAAGA 4 cut(s) 238, 250, 455, 562
MflI RGATCY 2 cut(s) 476, 524
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 7 cut(s) 92, 95, 218, 260, 388, 395, 538
MseI TTAA 1 cut(s) 574
MspR9I CCNGG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 6 cut(s) 118, 173, 182, 204, 213, 494
NdeII GATC 6 cut(s) 25, 116, 150, 415, 476, 524
NlaIII CATG 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 106
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 2 cut(s) 215, 490
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 450
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 2 cut(s) 476, 524
RsaI GTAC 2 cut(s) 134, 366
RsaNI GTAC 2 cut(s) 133, 365
SaqAI TTAA 1 cut(s) 574
SatI GCNGC 2 cut(s) 214, 489
Sau3AI GATC 6 cut(s) 25, 116, 150, 415, 476, 524
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 452
SetI ASST 5 cut(s) 282, 380, 424, 499, 507
SfaNI GCATC 2 cut(s) 298, 382
SfcI CTRYAG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
SnaBI TACGTA 1 cut(s) 280
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 68
SspMI CTAG 3 cut(s) 113, 303, 387
StyD4I CCNGG 1 cut(s) 450
TaiI ACGT 1 cut(s) 282
TaqI TCGA 3 cut(s) 28, 189, 252
TatI WGTACW 2 cut(s) 132, 364
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 574
Tru9I TTAA 1 cut(s) 574
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 526
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 3 cut(s) 113, 303, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.