RLG00000037077

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011299
Physical Location & Seq
Reverse (-)
88094433 .. 88097799
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037077

Sequence Viewer

Length: 828 bp
ATGATGCTTTGCGAAGCATTGCGTGATCGAATACAGGCATGGCTTCGTGACTACGACAGGCTTCAATATATGGCCGTCATCCTCCTCTACATTCAGATAGCGTGCGCATTGGTAGGATCGCTGGGAGCATTGTACAACGGAGTGTTGCTGATCAATCTGGCGATTGCATTGTTCGCTCTGGTCGCAATCGAAAGTAGCAGTCAGAGCCTCGGCCGCACATACGCCGTCCTTCTCGTCTGCGCCATCTTCCTCGATATCTTCTGGTTCATTCTCTTTTGTCACGAAATATGGTCACTCATTAACTCTCTCACTCTCTCTCTCATTTTCCATTCCCGTCCCATCTCTCTCTCTCTCTCTCTCTTCTTACTTTCCCTACTCTCTCTCTCTTGCAGGATTCTTGCTCCCGGCGATTATACAGCTCTCTATATCTTTTCAGTCAAACTCACTCTCGTTATGCAAATCATCGGCTTTTTCATCAGGTTTTCCTCCTCATTCCTGTGGATTCAGATCTACAGGTTGGGCCTTTCCTACGTAGTAGACCCTGCACCAACTCCTAGAGATGCAGATTTTGATTTACGAAATAGTTTCTTGAGTCCAACTACTCCCACGCCTGCTGTACTTAGACAAACCTCTGATTCTAGTGATGCCTTAGGAGGCTCTATCTATGATCCAGCTTATTACTCATCACTCTTCGAAGAAAGCCAGGGAAAATGTTTCAGTGGCAATGGATCTACTTCTGCTGCTGAAGCTTGTAAGGTGAAACCATCTTTTGTCAGATCTTTTCAGTTCATAGATGAGGAGAAGACAGCAAGCCAGCATTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.62

Weight (kDa)

5.59

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccI GTMKAC 1 cut(s) 537
AciI CCGC 1 cut(s) 214
AclWI GGATC 3 cut(s) 124, 662, 736
AcoI YGGCCR 2 cut(s) 72, 211
AcuI CTGAAG 1 cut(s) 765
AfaI GTAC 2 cut(s) 134, 618
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 3 cut(s) 419, 674, 749
AluI AGCT 3 cut(s) 419, 674, 749
AlwI GGATC 3 cut(s) 124, 662, 736
AoxI GGCC 3 cut(s) 72, 211, 520
ApeKI GCWGC 1 cut(s) 740
AspLEI GCGC 2 cut(s) 107, 242
AspS9I GGNCC 1 cut(s) 520
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 769
AsuII TTCGAA 1 cut(s) 693
AxyI CCTNAGG 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 809
BbvI GCAGC 1 cut(s) 727
BccI CCATC 3 cut(s) 251, 347, 772
BceAI ACGGC 2 cut(s) 59, 209
BciT130I CCWGG 1 cut(s) 704
BclI TGATCA 1 cut(s) 150
BcnI CCSGG 1 cut(s) 405
BfaI CTAG 2 cut(s) 555, 639
BfmI CTRYAG 1 cut(s) 511
BglII AGATCT 2 cut(s) 507, 776
BisI GCNGC 2 cut(s) 214, 741
BlsI GCNGC 2 cut(s) 215, 742
Bme1390I CCNGG 2 cut(s) 405, 704
BmgT120I GGNCC 1 cut(s) 520
BmrFI CCNGG 2 cut(s) 405, 704
BmsI GCATC 2 cut(s) 550, 634
BpiI GAAGAC 1 cut(s) 809
Bpu14I TTCGAA 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 506
BsaJI CCNNGG 2 cut(s) 208, 703
Bse21I CCTNAGG 1 cut(s) 649
Bse3DI GCAATG 2 cut(s) 17, 730
Bse8I GATNNNNATC 1 cut(s) 506
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 2 cut(s) 208, 703
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 506
BseMI GCAATG 2 cut(s) 17, 730
BseRI GAGGAG 3 cut(s) 74, 478, 812
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 727
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 528
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 74, 213, 522
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 3 cut(s) 74, 213, 522
Bsp119I TTCGAA 1 cut(s) 693
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
BspACI CCGC 1 cut(s) 214
BspANI GGCC 3 cut(s) 74, 213, 522
BspPI GGATC 3 cut(s) 124, 662, 736
BspT104I TTCGAA 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 17, 730
BsrGI TGTACA 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 208, 703
BssMI GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
Bst2UI CCWGG 1 cut(s) 704
Bst6I CTCTTC 2 cut(s) 365, 695
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 532
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 4 cut(s) 103, 612, 811, 815
BstDEI CTNAG 2 cut(s) 620, 649
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 107, 242
BstKTI GATC 7 cut(s) 28, 119, 153, 510, 670, 731, 779
BstMBI GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 746
BstNI CCWGG 1 cut(s) 704
BstSCI CCNGG 2 cut(s) 403, 702
BstSFI CTRYAG 1 cut(s) 511
BstSNI TACGTA 1 cut(s) 532
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 1 cut(s) 809
BstX2I RGATCY 3 cut(s) 507, 728, 776
BstYI RGATCY 3 cut(s) 507, 728, 776
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 649
BsuRI GGCC 3 cut(s) 74, 213, 522
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 724
Cac8I GCNNGC 4 cut(s) 103, 612, 811, 815
CfoI GCGC 2 cut(s) 107, 242
Cfr13I GGNCC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 133, 617
CviAII CATG 1 cut(s) 39
CviQI GTAC 2 cut(s) 133, 617
DdeI CTNAG 2 cut(s) 620, 649
DpnI GATC 7 cut(s) 27, 118, 152, 509, 669, 730, 778
DpnII GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
EaeI YGGCCR 2 cut(s) 72, 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 365, 695
EarI CTCTTC 2 cut(s) 365, 695
EclXI CGGCCG 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 532
Eco32I GATATC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 765
Eco81I CCTNAGG 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 702
EcoRV GATATC 1 cut(s) 256
FaeI CATG 1 cut(s) 42
FaqI GGGAC 1 cut(s) 321
FatI CATG 1 cut(s) 38
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 2 cut(s) 214, 741
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 214, 741
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 2 cut(s) 555, 639
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 106, 241
GluI GCNGC 2 cut(s) 214, 741
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 3 cut(s) 74, 213, 522
HapII CCGG 1 cut(s) 405
HhaI GCGC 2 cut(s) 107, 242
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 2 cut(s) 105, 240
HinP1I GCGC 2 cut(s) 105, 240
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 4 cut(s) 394, 502, 592, 635
HpaII CCGG 1 cut(s) 405
HphI GGTGA 1 cut(s) 769
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 5 cut(s) 96, 204, 507, 634, 776
Hpy188III TCNNGA 3 cut(s) 47, 281, 589
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 5 cut(s) 167, 390, 457, 545, 563
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 746
HpyF3I CTNAG 2 cut(s) 620, 649
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 2 cut(s) 105, 240
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
LmnI GCTCC 2 cut(s) 125, 406
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 2 cut(s) 550, 634
MaeI CTAG 2 cut(s) 555, 639
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 47, 278, 291
MalI GATC 7 cut(s) 27, 118, 152, 509, 669, 730, 778
MboI GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
MboII GAAGA 6 cut(s) 238, 250, 352, 682, 707, 814
MflI RGATCY 3 cut(s) 507, 728, 776
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 9 cut(s) 92, 95, 218, 260, 496, 499, 640, 647, 790
MseI TTAA 2 cut(s) 300, 826
MslI CAYNNNNRTG 1 cut(s) 496
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 405, 704
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 1 cut(s) 704
MwoI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 746
NciI CCSGG 1 cut(s) 405
NdeII GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
NlaIII CATG 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 3 cut(s) 47, 278, 291
NsbI TGCGCA 1 cut(s) 106
NspV TTCGAA 1 cut(s) 693
PctI GAATGC 1 cut(s) 817
PfeI GAWTC 3 cut(s) 394, 502, 635
PkrI GCNGC 2 cut(s) 215, 742
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
Ppu21I YACGTR 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 702
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 702
PspPI GGNCC 1 cut(s) 520
PsuI RGATCY 3 cut(s) 507, 728, 776
RsaI GTAC 2 cut(s) 134, 618
RsaNI GTAC 2 cut(s) 133, 617
RseI CAYNNNNRTG 1 cut(s) 496
SaqAI TTAA 2 cut(s) 300, 826
SatI GCNGC 2 cut(s) 214, 741
Sau3AI GATC 7 cut(s) 25, 116, 150, 507, 667, 728, 776
Sau96I GGNCC 1 cut(s) 520
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 2 cut(s) 405, 704
SetI ASST 8 cut(s) 421, 482, 518, 534, 632, 676, 751, 759
SfaNI GCATC 2 cut(s) 550, 634
SfcI CTRYAG 1 cut(s) 511
SfuI TTCGAA 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SnaBI TACGTA 1 cut(s) 532
SsiI CCGC 1 cut(s) 214
SspMI CTAG 2 cut(s) 555, 639
StyD4I CCNGG 2 cut(s) 403, 702
TaiI ACGT 1 cut(s) 534
TaqI TCGA 4 cut(s) 28, 189, 252, 693
TatI WGTACW 2 cut(s) 132, 616
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 394, 502, 635
Tru1I TTAA 2 cut(s) 300, 826
Tru9I TTAA 2 cut(s) 300, 826
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 3 cut(s) 47, 278, 291
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 3 cut(s) 47, 278, 291
TspDTI ATGAA 3 cut(s) 256, 463, 778
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 537
XspI CTAG 2 cut(s) 555, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.