Prupe.6G001400_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011299
Physical Location & Seq
Forward (+)
231196 .. 235094
3899 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G001400.1

Sequence Viewer

Length: 777 bp
ATGCTTTGTGAATCATTGCGTGATCGAATACAGCCATGGCTTCGTGATTACGACAGGCTTCAATCATTGGCCGTCATCCTCCTCTACATTCAGGTTGGGTGTGCATTGGTGGGATCGCTGGGAGCACTGTACAACGGGGTGTTGCTGATAAATCTGGCGATTGCATTGTTCGCTCTGGTAGCAATCGAGAGCAGCAGTCAGAGCCTCGGCCGTACATATGCCGTCCTTCTCGTCTGCACCGTCTTCCTCGATGTCTTTTGGTTCATTCTCTTTTCCCACGAAATATGGAACCTTTCTCCTGGGAGTAATACAATTTGGTACATCTTCTCAGTGAAACTCACTCTCGTCATGCAAATTGTTGGCTTTTCTGTGAGGTTATCCTCCTCCTTCTTGTGGATTCAGATTTACAGGTTGGGCCTTTCCTATGTAGACACTATTGCACTTCCTAGAGAAGCCGATTTTGATTTGAGAAATAGTTTCTTGAGTCCAACTACTCCTGTTGTACCTCGACAAACTTCAGATTCTAGTGATGCTTTAGGGGGCTCTATTTATGATCCAGCTTATTACTCATCACTCTTTGAAGATGGTCAGGGAAAATGTTACAGTGGCAATGGATCTACTTCTGCTGCTGAAGCTTCTAAGGTGAAACCATCTGTAGTCAGATCTTTTGAGTTTGTAGATCAACGCCAACTGACCGAATATTTCATTCACATGCTTATCTACATCGAGTTTTTGGTTGGGTGGCACTTTGAGGCCATTTTCTTGGATTTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.04

Weight (kDa)

4.9

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 429
AclWI GGATC 3 cut(s) 121, 548, 622
AcoI YGGCCR 2 cut(s) 69, 208
AcuI CTGAAG 2 cut(s) 501, 651
AfaI GTAC 4 cut(s) 131, 214, 320, 504
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 3 cut(s) 62, 581, 772
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 560, 635
AluI AGCT 2 cut(s) 560, 635
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 3 cut(s) 121, 548, 622
AoxI GGCC 4 cut(s) 69, 208, 415, 753
ApeKI GCWGC 2 cut(s) 192, 626
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 655
BanII GRGCYC 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 204, 613
BccI CCATC 2 cut(s) 578, 658
BceAI ACGGC 3 cut(s) 56, 195, 206
BciT130I CCWGG 1 cut(s) 300
BfaI CTAG 2 cut(s) 447, 525
BfmI CTRYAG 1 cut(s) 654
BglII AGATCT 1 cut(s) 662
BisI GCNGC 2 cut(s) 193, 627
BlsI GCNGC 2 cut(s) 194, 628
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 502
BsaJI CCNNGG 3 cut(s) 35, 205, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse3DI GCAATG 2 cut(s) 14, 616
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 35, 205, 299
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 2 cut(s) 14, 616
BseMII CTCAG 1 cut(s) 342
BseRI GAGGAG 2 cut(s) 71, 373
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 204, 613
BseYI CCCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 71, 210, 417, 755
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 393
BsnI GGCC 4 cut(s) 71, 210, 417, 755
Bsp1286I GDGCHC 2 cut(s) 127, 545
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 6 cut(s) 22, 113, 553, 614, 662, 679
Bsp19I CCATGG 1 cut(s) 35
BspANI GGCC 4 cut(s) 71, 210, 417, 755
BspCNI CTCAG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 290
BspPI GGATC 3 cut(s) 121, 548, 622
BsrDI GCAATG 2 cut(s) 14, 616
BsrGI TGTACA 1 cut(s) 129
BssECI CCNNGG 3 cut(s) 35, 205, 299
BssMI GATC 6 cut(s) 22, 113, 553, 614, 662, 679
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 129, 241, 605
BstAUI TGTACA 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 328, 639
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 6 cut(s) 25, 116, 556, 617, 665, 682
BstMBI GATC 6 cut(s) 22, 113, 553, 614, 662, 679
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 4 cut(s) 170, 179, 201, 632
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 204, 613
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 614, 662
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 2 cut(s) 614, 662
BstZI CGGCCG 1 cut(s) 208
BsuRI GGCC 4 cut(s) 71, 210, 417, 755
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 3 cut(s) 125, 336, 610
Cfr13I GGNCC 1 cut(s) 415
Csp6I GTAC 4 cut(s) 130, 213, 319, 503
CviAII CATG 3 cut(s) 36, 349, 712
CviQI GTAC 4 cut(s) 130, 213, 319, 503
DdeI CTNAG 2 cut(s) 328, 639
DpnI GATC 6 cut(s) 24, 115, 555, 616, 664, 681
DpnII GATC 6 cut(s) 22, 113, 553, 614, 662, 679
EaeI YGGCCR 2 cut(s) 69, 208
EagI CGGCCG 1 cut(s) 208
EclXI CGGCCG 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 545
Eco52I CGGCCG 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 501, 651
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 3 cut(s) 39, 352, 715
FaiI YATR 8 cut(s) 37, 217, 219, 286, 350, 426, 552, 713
FatI CATG 3 cut(s) 35, 348, 711
FauNDI CATATG 1 cut(s) 217
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 193, 627
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 2 cut(s) 193, 627
FspBI CTAG 2 cut(s) 447, 525
GluI GCNGC 2 cut(s) 193, 627
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 4 cut(s) 71, 210, 417, 755
Hin1II CATG 3 cut(s) 39, 352, 715
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 4 cut(s) 11, 397, 484, 521
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 4 cut(s) 201, 402, 520, 662
Hpy188III TCNNGA 3 cut(s) 44, 187, 481
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 2 cut(s) 236, 397
HpyCH4III ACNGT 3 cut(s) 129, 241, 605
HpyCH4V TGCA 5 cut(s) 104, 164, 237, 352, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 179, 201, 632
HpyF3I CTNAG 2 cut(s) 328, 639
Hsp92II CATG 3 cut(s) 39, 352, 715
Kzo9I GATC 6 cut(s) 22, 113, 553, 614, 662, 679
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 2 cut(s) 204, 613
LweI GCATC 1 cut(s) 520
MaeI CTAG 2 cut(s) 447, 525
MaeIII GTNAC 1 cut(s) 599
MalI GATC 6 cut(s) 24, 115, 555, 616, 664, 681
MboI GATC 6 cut(s) 22, 113, 553, 614, 662, 679
MboII GAAGA 3 cut(s) 235, 316, 593
MflI RGATCY 2 cut(s) 614, 662
MhlI GDGCHC 2 cut(s) 127, 545
MluCI AATT 2 cut(s) 312, 354
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 512
MnlI CCTC 9 cut(s) 89, 92, 215, 257, 366, 391, 394, 516, 745
MslI CAYNNNNRTG 1 cut(s) 710
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 4 cut(s) 170, 179, 201, 632
NcoI CCATGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 217
NdeII GATC 6 cut(s) 22, 113, 553, 614, 662, 679
NlaIII CATG 3 cut(s) 39, 352, 715
NlaIV GGNNCC 1 cut(s) 290
NmeAIII GCCGAG 1 cut(s) 186
NspI RCATGY 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 3 cut(s) 11, 397, 521
PkrI GCNGC 2 cut(s) 194, 628
PleI GAGTC 1 cut(s) 492
PpsI GAGTC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 415
PsuI RGATCY 2 cut(s) 614, 662
RsaI GTAC 4 cut(s) 131, 214, 320, 504
RsaNI GTAC 4 cut(s) 130, 213, 319, 503
RseI CAYNNNNRTG 1 cut(s) 710
SatI GCNGC 2 cut(s) 193, 627
Sau3AI GATC 6 cut(s) 22, 113, 553, 614, 662, 679
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 2 cut(s) 127, 545
SetI ASST 8 cut(s) 96, 294, 377, 413, 508, 562, 637, 645
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
Sse9I AATT 2 cut(s) 312, 354
SspI AATATT 1 cut(s) 701
SspMI CTAG 2 cut(s) 447, 525
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 3 cut(s) 129, 241, 605
TaqI TCGA 5 cut(s) 25, 186, 249, 508, 726
TaqII GACCGA 1 cut(s) 710
TasI AATT 2 cut(s) 312, 354
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 3 cut(s) 11, 397, 521
TscAI CASTG 3 cut(s) 132, 336, 610
TseI GCWGC 2 cut(s) 192, 626
TspDTI ATGAA 2 cut(s) 253, 694
TspRI CASTG 3 cut(s) 132, 336, 610
XceI RCATGY 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 2 cut(s) 447, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.