Rh5CG588600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011299
Physical Location & Seq
Reverse (-)
83376565 .. 83380632
4068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG588600.1

Sequence Viewer

Length: 822 bp
ATGATGCTTTGCGAAGCATTGCGTGATCGAATACAGGCATGGCTTCGTGACTACGACAGGCTTCAATATTTGGCGATCATCCTCCTCTACATTCAGATTGCGTGCGCATTGGTAGGATCGCTGGGAGCATTGTACAACGGAGTGTTGCTGATCAATCTGGCGATTGCATTGTTCGCTCTGGTCGCAATCGAAAGTAGCAGTCAGAGCCTCGGCCGCACATACGCCGTCCTTCTCGTCTGCGCCATCTTCCTCGATATCTTCTGGTTCATTCTCTTTTGTCACGAAATATGGTCACTCATCAACTCACTCACTCTCTCTCTCATTTTCCATTCCCGTCCCATCTCTCTATCTCTTCTTACTTTCCCTACTCTCTCTCTCTTTTGCAGGATTCTTACTACCGGCGATTATACAGCTCTCTATATCTTTTCAGTCAAACTCACTCTCGTTATGCAAATCATCGGCTTTTTTATCAGGTTTTCCTCCTCATTCCTGTGGATTCAGATCTACAGGTTGGGCCTCTCCTACGTAGTAGACCCTGCACCGACTCCTAGAGATGCAGATTTTGATTTACGAAATAGTTTCTTGAGTCCAACTACTCCCACGCCTGCTGTACTTAGACAAACCTCCGATTCTAGTGATGCCTTAGGAGGCTCTATCTATGATCCAGCTTATTACTCATCACTCTTCGAAGAGAGCCAGGGAAAATGTTTCAGTGGCAATGGATCTACATCTGCTGCTGAAGCTTGTAAGGTGAAACCATCTGTAGTCAGATCTTTTCAGTTCATAGATGAGGAGAAGACAGCAAGCCAGCATTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.45

Weight (kDa)

5.59

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccI GTMKAC 1 cut(s) 531
AciI CCGC 1 cut(s) 214
AclWI GGATC 3 cut(s) 124, 656, 730
AcoI YGGCCR 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 2 cut(s) 134, 612
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 3 cut(s) 413, 668, 743
AluI AGCT 3 cut(s) 413, 668, 743
AlwI GGATC 3 cut(s) 124, 656, 730
AoxI GGCC 2 cut(s) 211, 514
ApeKI GCWGC 1 cut(s) 734
AspLEI GCGC 2 cut(s) 107, 242
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 763
AsuII TTCGAA 1 cut(s) 687
AxyI CCTNAGG 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 721
BccI CCATC 3 cut(s) 251, 347, 766
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 698
BclI TGATCA 1 cut(s) 150
BfaI CTAG 2 cut(s) 549, 633
BfmI CTRYAG 2 cut(s) 505, 762
BglII AGATCT 2 cut(s) 501, 770
BisI GCNGC 2 cut(s) 214, 735
BlsI GCNGC 2 cut(s) 215, 736
Bme1390I CCNGG 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 514
BmrFI CCNGG 1 cut(s) 698
BmsI GCATC 2 cut(s) 544, 628
BpiI GAAGAC 1 cut(s) 803
Bpu14I TTCGAA 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 526
BsaBI GATNNNNATC 2 cut(s) 500, 727
BsaJI CCNNGG 2 cut(s) 208, 697
Bse118I RCCGGY 1 cut(s) 398
Bse21I CCTNAGG 1 cut(s) 643
Bse3DI GCAATG 2 cut(s) 17, 724
Bse8I GATNNNNATC 2 cut(s) 500, 727
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 2 cut(s) 208, 697
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 2 cut(s) 500, 727
BseMI GCAATG 2 cut(s) 17, 724
BseRI GAGGAG 3 cut(s) 74, 472, 806
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 721
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 213, 516
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 2 cut(s) 213, 516
Bsp119I TTCGAA 1 cut(s) 687
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 213, 516
BspPI GGATC 3 cut(s) 124, 656, 730
BspT104I TTCGAA 1 cut(s) 687
BsrDI GCAATG 2 cut(s) 17, 724
BsrFI RCCGGY 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 208, 697
BssMI GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
Bst2UI CCWGG 1 cut(s) 698
Bst6I CTCTTC 3 cut(s) 357, 684, 689
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 687
BstC8I GCNNGC 4 cut(s) 103, 606, 805, 809
BstDEI CTNAG 2 cut(s) 614, 643
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 107, 242
BstKTI GATC 8 cut(s) 28, 78, 119, 153, 504, 664, 725, 773
BstMBI GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 740
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 696
BstSFI CTRYAG 2 cut(s) 505, 762
BstSNI TACGTA 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 721
BstV2I GAAGAC 1 cut(s) 803
BstX2I RGATCY 3 cut(s) 501, 722, 770
BstYI RGATCY 3 cut(s) 501, 722, 770
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 643
BsuRI GGCC 2 cut(s) 213, 516
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 718
Cac8I GCNNGC 4 cut(s) 103, 606, 805, 809
CfoI GCGC 2 cut(s) 107, 242
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 514
Csp6I GTAC 2 cut(s) 133, 611
CviAII CATG 1 cut(s) 39
CviQI GTAC 2 cut(s) 133, 611
DdeI CTNAG 2 cut(s) 614, 643
DpnI GATC 8 cut(s) 27, 77, 118, 152, 503, 663, 724, 772
DpnII GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 357, 684, 689
EarI CTCTTC 3 cut(s) 357, 684, 689
EclXI CGGCCG 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 526
Eco32I GATATC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 759
Eco81I CCTNAGG 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 696
EcoRV GATATC 1 cut(s) 256
FaeI CATG 1 cut(s) 42
FaiI YATR 8 cut(s) 40, 220, 289, 408, 420, 449, 660, 785
FaqI GGGAC 1 cut(s) 321
FatI CATG 1 cut(s) 38
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 214, 735
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 214, 735
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 2 cut(s) 549, 633
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 106, 241
GluI GCNGC 2 cut(s) 214, 735
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 213, 516
HapII CCGG 1 cut(s) 399
HhaI GCGC 2 cut(s) 107, 242
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 2 cut(s) 105, 240
HinP1I GCGC 2 cut(s) 105, 240
HindIII AAGCTT 1 cut(s) 741
HinfI GANTC 5 cut(s) 388, 496, 544, 586, 629
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 763
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 5 cut(s) 96, 204, 501, 628, 770
Hpy188III TCNNGA 3 cut(s) 47, 281, 583
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 5 cut(s) 167, 384, 451, 539, 557
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 740
HpyF3I CTNAG 2 cut(s) 614, 643
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 2 cut(s) 105, 240
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 721
LweI GCATC 2 cut(s) 544, 628
MaeI CTAG 2 cut(s) 549, 633
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 3 cut(s) 47, 278, 291
MalI GATC 8 cut(s) 27, 77, 118, 152, 503, 663, 724, 772
MboI GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
MboII GAAGA 6 cut(s) 238, 250, 344, 676, 701, 808
MflI RGATCY 3 cut(s) 501, 722, 770
MlyI GAGTC 2 cut(s) 538, 595
MmeI TCCRAC 1 cut(s) 614
MseI TTAA 1 cut(s) 820
MslI CAYNNNNRTG 1 cut(s) 490
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 698
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 740
NdeII GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
NlaIII CATG 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 3 cut(s) 47, 278, 291
NsbI TGCGCA 1 cut(s) 106
NspV TTCGAA 1 cut(s) 687
PctI GAATGC 1 cut(s) 811
PfeI GAWTC 3 cut(s) 388, 496, 629
PkrI GCNGC 2 cut(s) 215, 736
PleI GAGTC 2 cut(s) 538, 594
PpsI GAGTC 2 cut(s) 538, 594
Ppu21I YACGTR 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 696
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 696
PspPI GGNCC 1 cut(s) 514
PsuI RGATCY 3 cut(s) 501, 722, 770
RsaI GTAC 2 cut(s) 134, 612
RsaNI GTAC 2 cut(s) 133, 611
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 1 cut(s) 820
SatI GCNGC 2 cut(s) 214, 735
Sau3AI GATC 8 cut(s) 25, 75, 116, 150, 501, 661, 722, 770
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 538, 595
ScrFI CCNGG 1 cut(s) 698
SetI ASST 8 cut(s) 415, 476, 512, 528, 626, 670, 745, 753
SfaNI GCATC 2 cut(s) 544, 628
SfcI CTRYAG 2 cut(s) 505, 762
SfuI TTCGAA 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
SnaBI TACGTA 1 cut(s) 526
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 68
SspMI CTAG 2 cut(s) 549, 633
StyD4I CCNGG 1 cut(s) 696
TaiI ACGT 1 cut(s) 528
TaqI TCGA 4 cut(s) 28, 189, 252, 687
TatI WGTACW 2 cut(s) 132, 610
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 388, 496, 629
Tru1I TTAA 1 cut(s) 820
Tru9I TTAA 1 cut(s) 820
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 3 cut(s) 47, 278, 291
TseI GCWGC 1 cut(s) 734
Tsp45I GTSAC 3 cut(s) 47, 278, 291
TspDTI ATGAA 2 cut(s) 256, 772
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 2 cut(s) 549, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.