Rh5BG566600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011299
Physical Location & Seq
Reverse (-)
89655305 .. 89659403
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG566600.1

Sequence Viewer

Length: 750 bp
ATGATGCTTTGCGAAGCATTGCGTGATCGAATACAGGCATGGCTTCGTGACTACGACAGGCTTCAATATTTGGCGATCATCCTCCTCTACATTCAGATTGCGTGCGCATTGGTAGGATCGCTGGGAGCATTGTACAACGGAGTGTTGCTGATCAATCTGGCGATTGCATTGTTCGCTCTGGTCGCAATCGAAAGTAGCAGTCAGAGCCTCGGCCGCACATACGCCGTCCTTCTCGTCTGCGCCATCTTCCTCGATATCTTCTGGTTCATTCTCTTTTGTCACGAAATATGGATTCTTACTACCGGCGATTATACAGCTCTCTATATCTTTTCAGTCAAACTCACTCTCGTTATGCAAATCATCGGCTTTTTTATCAGGTTTTCCTCCTCATTCCTGTGGATTCAGATCTACAGGTTGGGCCTCTCCTACGTAGTAGACCCTGCACCGACTCCTAGAGATGCAGATTTTGATTTACGAAATAGTTTCTTGAGTCCAACTACTCCCACGCCTGCTGTACTTAGACAAACCTCCGATTCTAGTGATGCCTTAGGAGGCTCTATCTATGATCCAGCTTATTACTCATCACTCTTCGAAGAGAGCCAGGTTTGTTCTCAGTTGCTCTTCTCCTTTTCATGTTCAATATCAGTTTTTGTCATCAACTCTTGCTGTCTGCATAATCGTTGCACATTTAAAAGAAGCTTACCTTTATTAATCTTGGGAATTATAAACTCAACAGATTGGAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.14

Weight (kDa)

5.29

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
Acc16I TGCGCA 1 cut(s) 106
AccI GTMKAC 1 cut(s) 435
AciI CCGC 1 cut(s) 214
AclWI GGATC 2 cut(s) 124, 560
AcoI YGGCCR 1 cut(s) 211
AfaI GTAC 2 cut(s) 134, 516
AgsI TTSAA 2 cut(s) 65, 639
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 3 cut(s) 317, 572, 699
AluI AGCT 3 cut(s) 317, 572, 699
AlwI GGATC 2 cut(s) 124, 560
AoxI GGCC 2 cut(s) 211, 418
AseI ATTAAT 1 cut(s) 710
AspLEI GCGC 2 cut(s) 107, 242
AspS9I GGNCC 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 591
AxyI CCTNAGG 1 cut(s) 547
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 602
BclI TGATCA 1 cut(s) 150
BfaI CTAG 2 cut(s) 453, 537
BfmI CTRYAG 1 cut(s) 409
BglII AGATCT 1 cut(s) 405
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 2 cut(s) 448, 532
Bpu14I TTCGAA 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 508
BsaAI YACGTR 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 302
Bse21I CCTNAGG 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 17
Bse8I GATNNNNATC 1 cut(s) 404
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 404
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 626
BseRI GAGGAG 2 cut(s) 74, 376
BseX3I CGGCCG 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 213, 420
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 303
BsnI GGCC 2 cut(s) 213, 420
Bsp119I TTCGAA 1 cut(s) 591
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 6 cut(s) 25, 75, 116, 150, 405, 565
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 213, 420
BspCNI CTCAG 1 cut(s) 625
BspPI GGATC 2 cut(s) 124, 560
BspQI GCTCTTC 1 cut(s) 626
BspT104I TTCGAA 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 6 cut(s) 25, 75, 116, 150, 405, 565
Bst2UI CCWGG 1 cut(s) 602
Bst6I CTCTTC 3 cut(s) 588, 593, 626
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 103, 510
BstDEI CTNAG 3 cut(s) 518, 547, 612
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 107, 242
BstKTI GATC 6 cut(s) 28, 78, 119, 153, 408, 568
BstMBI GATC 6 cut(s) 25, 75, 116, 150, 405, 565
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 4 cut(s) 173, 182, 204, 213
BstNI CCWGG 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 409
BstSNI TACGTA 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 547
BsuRI GGCC 2 cut(s) 213, 420
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 103, 510
CfoI GCGC 2 cut(s) 107, 242
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 133, 515
CviAII CATG 2 cut(s) 39, 633
CviQI GTAC 2 cut(s) 133, 515
DdeI CTNAG 3 cut(s) 518, 547, 612
DpnI GATC 6 cut(s) 27, 77, 118, 152, 407, 567
DpnII GATC 6 cut(s) 25, 75, 116, 150, 405, 565
DraI TTTAAA 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 588, 593, 626
EarI CTCTTC 3 cut(s) 588, 593, 626
EclXI CGGCCG 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 430
Eco32I GATATC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 600
EcoRV GATATC 1 cut(s) 256
FaeI CATG 2 cut(s) 42, 636
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FatI CATG 2 cut(s) 38, 632
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 214
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 2 cut(s) 453, 537
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 106, 241
GluI GCNGC 1 cut(s) 214
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 213, 420
HapII CCGG 1 cut(s) 303
HhaI GCGC 2 cut(s) 107, 242
Hin1II CATG 2 cut(s) 42, 636
Hin6I GCGC 2 cut(s) 105, 240
HinP1I GCGC 2 cut(s) 105, 240
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 5 cut(s) 292, 400, 448, 490, 533
HpaII CCGG 1 cut(s) 303
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 4 cut(s) 96, 204, 405, 532
Hpy188III TCNNGA 3 cut(s) 47, 281, 487
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 6 cut(s) 167, 355, 443, 461, 673, 684
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 182, 204, 213
HpyF3I CTNAG 3 cut(s) 518, 547, 612
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 42, 636
HspAI GCGC 2 cut(s) 105, 240
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 6 cut(s) 25, 75, 116, 150, 405, 565
LguI GCTCTTC 1 cut(s) 626
LmnI GCTCC 1 cut(s) 125
LweI GCATC 2 cut(s) 448, 532
MaeI CTAG 2 cut(s) 453, 537
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 47, 278
MalI GATC 6 cut(s) 27, 77, 118, 152, 407, 567
MboI GATC 6 cut(s) 25, 75, 116, 150, 405, 565
MboII GAAGA 5 cut(s) 238, 250, 580, 605, 613
MflI RGATCY 1 cut(s) 405
MluCI AATT 1 cut(s) 720
MlyI GAGTC 2 cut(s) 442, 499
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 9 cut(s) 92, 95, 218, 260, 394, 397, 431, 538, 545
MseI TTAA 2 cut(s) 690, 710
MslI CAYNNNNRTG 1 cut(s) 394
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 602
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 4 cut(s) 173, 182, 204, 213
NdeII GATC 6 cut(s) 25, 75, 116, 150, 405, 565
NlaIII CATG 2 cut(s) 42, 636
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 47, 278
NsbI TGCGCA 1 cut(s) 106
NspV TTCGAA 1 cut(s) 591
PciSI GCTCTTC 1 cut(s) 626
PfeI GAWTC 3 cut(s) 292, 400, 533
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 2 cut(s) 442, 498
PpsI GAGTC 2 cut(s) 442, 498
Ppu21I YACGTR 1 cut(s) 430
PshBI ATTAAT 1 cut(s) 710
PsiI TTATAA 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 600
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 600
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 1 cut(s) 405
RsaI GTAC 2 cut(s) 134, 516
RsaNI GTAC 2 cut(s) 133, 515
RseI CAYNNNNRTG 1 cut(s) 394
SapI GCTCTTC 1 cut(s) 626
SaqAI TTAA 2 cut(s) 690, 710
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 6 cut(s) 25, 75, 116, 150, 405, 565
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 2 cut(s) 442, 499
ScrFI CCNGG 1 cut(s) 602
SetI ASST 9 cut(s) 319, 380, 416, 432, 530, 574, 606, 701, 706
SfaNI GCATC 2 cut(s) 448, 532
SfcI CTRYAG 1 cut(s) 409
SfuI TTCGAA 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SnaBI TACGTA 1 cut(s) 430
Sse9I AATT 1 cut(s) 720
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 68
SspMI CTAG 2 cut(s) 453, 537
StyD4I CCNGG 1 cut(s) 600
TaiI ACGT 1 cut(s) 432
TaqI TCGA 4 cut(s) 28, 189, 252, 591
TasI AATT 1 cut(s) 720
TatI WGTACW 2 cut(s) 132, 514
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 292, 400, 533
Tru1I TTAA 2 cut(s) 690, 710
Tru9I TTAA 2 cut(s) 690, 710
TseFI GTSAC 2 cut(s) 47, 278
Tsp45I GTSAC 2 cut(s) 47, 278
TspDTI ATGAA 2 cut(s) 256, 621
TspGWI ACGGA 1 cut(s) 153
VspI ATTAAT 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 2 cut(s) 453, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.