Rmu_ssc0000372.1_g000087

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
OG0011299
Physical Location & Seq
Reverse (-)
327032 .. 333584
6553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000087.1.cds

Sequence Viewer

Length: 792 bp
atgatgctttgcgaagcattgcgtgatcgaatacaggcgtggcttcgtgactacgacaggcttcaatatttggcgatcatcctcctctacattcagattgcgtgcgcattggtaggatcgctgggagcattgtacaacggagtgttgctgatcaatctggcgattgcattgttcgctctggtcgcaatcgaaagcagcagtcagagcctcggccgcacatacgccgtccttctcgtctgcgccatcttcctcgatatcttctggttcattctcttttgtcacgaaatatggattcttactaccggcgattatacagctctctatatcttttcagtcaaactcactctcgttatgcaaatcatcggcttttttatcaggttttcctcctcattcctgtggattcagatctacaggttgggcctctcctacgtagtagaccctgcaccgactcctagagatgcagattttgatttacgaaatagtttcttgagtccaactactcccacgcctgctgtacttagacaaacctccgattctagtgatgccttaggaggctctatctatgatccagcttattactcatcactcttcgaagagagccagggaaaatgtttcggtggcaatggatctacatctgctgctgaagcttgtaaggtgaaaccatctgtagtcagatcttttcagttcatagatgtcaccggtcgccggaatcaggtcaccggtcgccggaatccggtcaccggacgccggagaccgcaccggccactggtcaccggagcacagcaaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.31

Weight (kDa)

8.75

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccI GTMKAC 1 cut(s) 435
AciI CCGC 2 cut(s) 214, 755
AclWI GGATC 3 cut(s) 124, 560, 634
AcoI YGGCCR 2 cut(s) 211, 761
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 745
AfaI GTAC 2 cut(s) 134, 516
AfiI CCNNNNNNNGG 7 cut(s) 705, 712, 726, 733, 740, 747, 766
AgeI ACCGGT 2 cut(s) 698, 719
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 3 cut(s) 317, 572, 647
AluI AGCT 3 cut(s) 317, 572, 647
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 745
AlwI GGATC 3 cut(s) 124, 560, 634
AoxI GGCC 3 cut(s) 211, 418, 761
ApeKI GCWGC 2 cut(s) 195, 638
AsiGI ACCGGT 2 cut(s) 698, 719
AspLEI GCGC 2 cut(s) 107, 242
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 5 cut(s) 667, 688, 709, 730, 763
AsuII TTCGAA 1 cut(s) 591
AxyI CCTNAGG 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 2 cut(s) 207, 625
BccI CCATC 2 cut(s) 251, 670
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 602
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 745
BfaI CTAG 2 cut(s) 453, 537
BfmI CTRYAG 2 cut(s) 409, 666
BglII AGATCT 2 cut(s) 405, 674
BisI GCNGC 3 cut(s) 196, 214, 639
BlsI GCNGC 3 cut(s) 197, 215, 640
Bme1390I CCNGG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 2 cut(s) 448, 532
Bpu14I TTCGAA 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 508
BsaAI YACGTR 1 cut(s) 430
BsaBI GATNNNNATC 2 cut(s) 404, 631
BsaHI GRCGYC 1 cut(s) 745
BsaI GGTCTC 1 cut(s) 745
BsaJI CCNNGG 2 cut(s) 208, 601
BsaWI WCCGGW 5 cut(s) 698, 719, 733, 740, 773
Bsc4I CCNNNNNNNGG 7 cut(s) 705, 712, 726, 733, 740, 747, 766
Bse118I RCCGGY 4 cut(s) 302, 698, 719, 759
Bse1I ACTGG 1 cut(s) 771
Bse21I CCTNAGG 1 cut(s) 547
Bse3DI GCAATG 2 cut(s) 17, 628
Bse8I GATNNNNATC 2 cut(s) 404, 631
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 208, 601
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 2 cut(s) 404, 631
BseLI CCNNNNNNNGG 7 cut(s) 705, 712, 726, 733, 740, 747, 766
BseMI GCAATG 2 cut(s) 17, 628
BseNI ACTGG 1 cut(s) 771
BseRI GAGGAG 2 cut(s) 74, 376
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 207, 625
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 426
Bsh1285I CGRYCG 3 cut(s) 214, 703, 724
BshFI GGCC 3 cut(s) 213, 420, 763
BshTI ACCGGT 2 cut(s) 698, 719
BsiEI CGRYCG 3 cut(s) 214, 703, 724
BsiHKAI GWGCWC 1 cut(s) 781
BslI CCNNNNNNNGG 7 cut(s) 705, 712, 726, 733, 740, 747, 766
BsmAI GTCTC 1 cut(s) 745
BsnI GGCC 3 cut(s) 213, 420, 763
Bso31I GGTCTC 1 cut(s) 745
Bsp119I TTCGAA 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 781
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
BspACI CCGC 2 cut(s) 214, 755
BspANI GGCC 3 cut(s) 213, 420, 763
BspPI GGATC 3 cut(s) 124, 560, 634
BspT104I TTCGAA 1 cut(s) 591
BspTNI GGTCTC 1 cut(s) 745
BsrDI GCAATG 2 cut(s) 17, 628
BsrFI RCCGGY 4 cut(s) 302, 698, 719, 759
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 1 cut(s) 771
BssAI RCCGGY 4 cut(s) 302, 698, 719, 759
BssECI CCNNGG 2 cut(s) 208, 601
BssMI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
BssNI GRCGYC 1 cut(s) 745
Bst2UI CCWGG 1 cut(s) 602
Bst6I CTCTTC 2 cut(s) 588, 593
BstACI GRCGYC 1 cut(s) 745
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 103, 510
BstDEI CTNAG 2 cut(s) 518, 547
BstEII GGTNACC 3 cut(s) 715, 736, 769
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 107, 242
BstKTI GATC 8 cut(s) 28, 78, 119, 153, 408, 568, 629, 677
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
BstMCI CGRYCG 3 cut(s) 214, 703, 724
BstMWI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 644
BstNI CCWGG 1 cut(s) 602
BstPI GGTNACC 3 cut(s) 715, 736, 769
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 2 cut(s) 409, 666
BstSNI TACGTA 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 207, 625
BstX2I RGATCY 3 cut(s) 405, 626, 674
BstYI RGATCY 3 cut(s) 405, 626, 674
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 547
BsuRI GGCC 3 cut(s) 213, 420, 763
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 764
Cac8I GCNNGC 2 cut(s) 103, 510
CfoI GCGC 2 cut(s) 107, 242
Cfr10I RCCGGY 4 cut(s) 302, 698, 719, 759
Cfr13I GGNCC 1 cut(s) 418
CseI GACGC 1 cut(s) 753
Csp6I GTAC 2 cut(s) 133, 515
CspAI ACCGGT 2 cut(s) 698, 719
CviQI GTAC 2 cut(s) 133, 515
DdeI CTNAG 2 cut(s) 518, 547
DpnI GATC 8 cut(s) 27, 77, 118, 152, 407, 567, 628, 676
DpnII GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
EaeI YGGCCR 2 cut(s) 211, 761
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 588, 593
EarI CTCTTC 2 cut(s) 588, 593
EclXI CGGCCG 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 745
Eco32I GATATC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 547
Eco91I GGTNACC 3 cut(s) 715, 736, 769
EcoO65I GGTNACC 3 cut(s) 715, 736, 769
EcoRII CCWGG 1 cut(s) 600
EcoRV GATATC 1 cut(s) 256
FaiI YATR 7 cut(s) 220, 289, 312, 324, 353, 564, 689
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 196, 214, 639
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 196, 214, 639
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 2 cut(s) 453, 537
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 106, 241
GluI GCNGC 3 cut(s) 196, 214, 639
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 3 cut(s) 213, 420, 763
HgaI GACGC 1 cut(s) 753
HhaI GCGC 2 cut(s) 107, 242
Hin1I GRCGYC 1 cut(s) 745
Hin6I GCGC 2 cut(s) 105, 240
HinP1I GCGC 2 cut(s) 105, 240
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 7 cut(s) 292, 400, 448, 490, 533, 709, 730
HphI GGTGA 5 cut(s) 667, 688, 709, 730, 763
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 5 cut(s) 96, 204, 405, 532, 674
Hpy188III TCNNGA 3 cut(s) 47, 281, 487
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 4 cut(s) 167, 355, 443, 461
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 644
HpyF3I CTNAG 2 cut(s) 518, 547
HpySE526I ACGT 1 cut(s) 429
Hsp92I GRCGYC 1 cut(s) 745
HspAI GCGC 2 cut(s) 105, 240
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
LmnI GCTCC 2 cut(s) 125, 776
Lsp1109I GCAGC 2 cut(s) 207, 625
LweI GCATC 2 cut(s) 448, 532
MaeI CTAG 2 cut(s) 453, 537
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 6 cut(s) 47, 278, 694, 715, 736, 769
MalI GATC 8 cut(s) 27, 77, 118, 152, 407, 567, 628, 676
MboI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
MboII GAAGA 4 cut(s) 238, 250, 580, 605
MflI RGATCY 3 cut(s) 405, 626, 674
MhlI GDGCHC 1 cut(s) 781
MlyI GAGTC 2 cut(s) 442, 499
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 9 cut(s) 92, 95, 218, 260, 394, 397, 431, 538, 545
MslI CAYNNNNRTG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 602
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 644
NdeII GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 6 cut(s) 47, 278, 694, 715, 736, 769
NsbI TGCGCA 1 cut(s) 106
NspV TTCGAA 1 cut(s) 591
PfeI GAWTC 5 cut(s) 292, 400, 533, 709, 730
PinAI ACCGGT 2 cut(s) 698, 719
PkrI GCNGC 3 cut(s) 197, 215, 640
PleI GAGTC 2 cut(s) 442, 498
PpsI GAGTC 2 cut(s) 442, 498
Ppu21I YACGTR 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 600
PspEI GGTNACC 3 cut(s) 715, 736, 769
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 600
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 3 cut(s) 405, 626, 674
RsaI GTAC 2 cut(s) 134, 516
RsaNI GTAC 2 cut(s) 133, 515
RseI CAYNNNNRTG 1 cut(s) 394
SatI GCNGC 3 cut(s) 196, 214, 639
Sau3AI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 2 cut(s) 442, 499
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 2 cut(s) 448, 532
SfcI CTRYAG 2 cut(s) 409, 666
SfuI TTCGAA 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SnaBI TACGTA 1 cut(s) 430
SsiI CCGC 2 cut(s) 214, 755
SspI AATATT 1 cut(s) 68
SspMI CTAG 2 cut(s) 453, 537
StyD4I CCNGG 1 cut(s) 600
TaiI ACGT 1 cut(s) 432
TaqI TCGA 4 cut(s) 28, 189, 252, 591
TatI WGTACW 2 cut(s) 132, 514
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 5 cut(s) 292, 400, 533, 709, 730
TscAI CASTG 1 cut(s) 771
TseFI GTSAC 6 cut(s) 47, 278, 694, 715, 736, 769
TseI GCWGC 2 cut(s) 195, 638
Tsp45I GTSAC 6 cut(s) 47, 278, 694, 715, 736, 769
TspDTI ATGAA 2 cut(s) 256, 676
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 771
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 2 cut(s) 453, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.