MD11G1001200.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011299
Physical Location & Seq
Forward (+)
159649 .. 165027
5379 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1001200.v1.1.491

Sequence Viewer

Length: 720 bp
ATGATGCTTTGTGAATCATTGCGTGATCGAATACAGCCATGGCTTCGTGATTACGACAGGCTTCAGTCATTGGCCGTCATTCTCCTCTACATTCAGATTGGGTGCGCATTGGTGGGATCGCTGGGTGCACTCTACAATGGGGTTTTGCTGATAAATCTGGCCATTGCATTGTTCGCCCTAGTCGCAATCGAGAGCAGCAGTCAGAGCCTCGGCCGCACATATGCCGTCCTTCTCGTCTGCGCCATCTTCCTCGATGTTTTCTGGTTCATTCTCTTCACCCACGAAATCTGGAACCTTTCTCGCGGGAGTAATACAACTTTGTACATCTTCTCCGTAAAGCTCACTCTGGCCATGCAAATTATCAGCTTTTCCATCAGGTTATCCTCTTCCTTGTTATGGATTCAGATCTACAGGTTGGGCCTTTCTTATGTAGACACTAGTGCAACTCCTAGAGAAGCTGATTTTGATTTAAGAAATAGTTTCTTGAGTCCCAGTACTCCCGTTGTACCCAGACAAACTTCAGATTCTAGTGATGCTATAGGAGGCGCTATCTATGATCCTGCGTATTACTCCTCACTCTTTGAAGATGGTCAGGGAAAATATTGCAGTGGCAACGGATCTACTTCTGCTGTCGAAGCTTCTAAGACAAAACCATCCGTAGTCAGATCGTTTCAGTTCGTAGATGAGGAGAAGGCAGCAAGCCAGCCTAGTTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.35

Weight (kDa)

5.17

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccI GTMKAC 1 cut(s) 432
AccII CGCG 1 cut(s) 303
AciI CCGC 2 cut(s) 214, 303
AclWI GGATC 3 cut(s) 124, 551, 625
AcoI YGGCCR 4 cut(s) 72, 159, 211, 348
AcuI CTGAAG 2 cut(s) 47, 504
AfaI GTAC 3 cut(s) 323, 496, 507
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 1 cut(s) 584
AhlI ACTAGT 1 cut(s) 437
AluBI AGCT 4 cut(s) 340, 366, 458, 638
AluI AGCT 4 cut(s) 340, 366, 458, 638
Alw21I GWGCWC 1 cut(s) 130
Alw44I GTGCAC 1 cut(s) 126
AlwI GGATC 3 cut(s) 124, 551, 625
AoxI GGCC 5 cut(s) 72, 159, 211, 348, 418
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 195, 695
AspLEI GCGC 3 cut(s) 107, 242, 548
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 130
BalI TGGCCA 2 cut(s) 161, 350
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 207, 707
BccI CCATC 4 cut(s) 251, 380, 581, 661
BceAI ACGGC 2 cut(s) 59, 209
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 5 cut(s) 179, 438, 450, 528, 708
BfmI CTRYAG 2 cut(s) 409, 537
BfoI RGCGCY 1 cut(s) 549
BglII AGATCT 1 cut(s) 405
BisI GCNGC 3 cut(s) 196, 214, 696
BlsI GCNGC 3 cut(s) 197, 215, 697
BmcAI AGTACT 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 293
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 38, 208
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 492
Bse3DI GCAATG 2 cut(s) 17, 162
Bse8I GATNNNNATC 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 38, 208
BseGI GGATG 1 cut(s) 653
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 2 cut(s) 17, 162
BseNI ACTGG 1 cut(s) 492
BseRI GAGGAG 3 cut(s) 74, 562, 701
BseSI GKGCMC 1 cut(s) 130
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 207, 707
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 5 cut(s) 74, 161, 213, 350, 420
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 130
BslFI GGGAC 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 474
BsnI GGCC 5 cut(s) 74, 161, 213, 350, 420
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 6 cut(s) 25, 116, 405, 556, 617, 665
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 2 cut(s) 214, 303
BspANI GGCC 5 cut(s) 74, 161, 213, 350, 420
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 293
BspPI GGATC 3 cut(s) 124, 551, 625
BsrDI GCAATG 2 cut(s) 17, 162
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 38, 208
BssMI GATC 6 cut(s) 25, 116, 405, 556, 617, 665
BssT1I CCWWGG 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 278, 391
BstAUI TGTACA 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 700, 704
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 653
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 3 cut(s) 107, 242, 548
BstKTI GATC 6 cut(s) 28, 119, 408, 559, 620, 668
BstMBI GATC 6 cut(s) 25, 116, 405, 556, 617, 665
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 635
BstSFI CTRYAG 2 cut(s) 409, 537
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 207, 707
BstX2I RGATCY 2 cut(s) 405, 617
BstYI RGATCY 2 cut(s) 405, 617
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 5 cut(s) 74, 161, 213, 350, 420
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 653
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 2 cut(s) 700, 704
CfoI GCGC 3 cut(s) 107, 242, 548
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 3 cut(s) 322, 495, 506
CviAII CATG 2 cut(s) 39, 352
CviQI GTAC 3 cut(s) 322, 495, 506
DdeI CTNAG 1 cut(s) 642
DpnI GATC 6 cut(s) 27, 118, 407, 558, 619, 667
DpnII GATC 6 cut(s) 25, 116, 405, 556, 617, 665
EaeI YGGCCR 4 cut(s) 72, 159, 211, 348
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 278, 391
EarI CTCTTC 2 cut(s) 278, 391
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 38
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 47, 504
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 355
FaiI YATR 8 cut(s) 40, 220, 222, 353, 397, 429, 539, 555
FaqI GGGAC 1 cut(s) 474
FatI CATG 2 cut(s) 38, 351
FauI CCCGC 1 cut(s) 296
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 3 cut(s) 196, 214, 696
FokI GGATG 1 cut(s) 640
Fsp4HI GCNGC 3 cut(s) 196, 214, 696
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 5 cut(s) 179, 438, 450, 528, 708
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 3 cut(s) 106, 241, 547
GluI GCNGC 3 cut(s) 196, 214, 696
GsaI CCCAGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 5 cut(s) 74, 161, 213, 350, 420
HhaI GCGC 3 cut(s) 107, 242, 548
Hin1II CATG 2 cut(s) 42, 355
Hin6I GCGC 3 cut(s) 105, 240, 546
HinP1I GCGC 3 cut(s) 105, 240, 546
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 4 cut(s) 14, 400, 487, 524
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 128, 433
Hpy188I TCNGA 5 cut(s) 96, 204, 405, 523, 665
Hpy188III TCNNGA 4 cut(s) 47, 190, 289, 484
Hpy8I GTNNAC 2 cut(s) 128, 433
HpyAV CCTTC 2 cut(s) 239, 685
HpyCH4V TGCA 5 cut(s) 128, 167, 355, 443, 606
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 635
HpyF3I CTNAG 1 cut(s) 642
Hsp92II CATG 2 cut(s) 42, 355
HspAI GCGC 3 cut(s) 105, 240, 546
Kzo9I GATC 6 cut(s) 25, 116, 405, 556, 617, 665
Lsp1109I GCAGC 2 cut(s) 207, 707
LweI GCATC 1 cut(s) 523
MaeI CTAG 5 cut(s) 179, 438, 450, 528, 708
MalI GATC 6 cut(s) 27, 118, 407, 558, 619, 667
MboI GATC 6 cut(s) 25, 116, 405, 556, 617, 665
MboII GAAGA 5 cut(s) 238, 265, 319, 378, 596
MflI RGATCY 2 cut(s) 405, 617
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 2 cut(s) 161, 350
MluCI AATT 1 cut(s) 357
MluNI TGGCCA 2 cut(s) 161, 350
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 7 cut(s) 95, 218, 260, 394, 536, 583, 679
Mox20I TGGCCA 2 cut(s) 161, 350
MscI TGGCCA 2 cut(s) 161, 350
MseI TTAA 2 cut(s) 470, 718
Msp20I TGGCCA 2 cut(s) 161, 350
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 635
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 220
NdeII GATC 6 cut(s) 25, 116, 405, 556, 617, 665
NlaIII CATG 2 cut(s) 42, 355
NlaIV GGNNCC 1 cut(s) 293
NmeAIII GCCGAG 1 cut(s) 189
NsbI TGCGCA 1 cut(s) 106
PfeI GAWTC 3 cut(s) 14, 400, 524
PkrI GCNGC 3 cut(s) 197, 215, 697
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 2 cut(s) 405, 617
RsaI GTAC 3 cut(s) 323, 496, 507
RsaNI GTAC 3 cut(s) 322, 495, 506
SaqAI TTAA 2 cut(s) 470, 718
SatI GCNGC 3 cut(s) 196, 214, 696
Sau3AI GATC 6 cut(s) 25, 116, 405, 556, 617, 665
Sau96I GGNCC 1 cut(s) 418
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 1 cut(s) 496
SduI GDGCHC 1 cut(s) 130
SetI ASST 7 cut(s) 297, 342, 368, 380, 416, 460, 640
SfaNI GCATC 1 cut(s) 523
SfcI CTRYAG 2 cut(s) 409, 537
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 1 cut(s) 357
SsiI CCGC 2 cut(s) 214, 303
SspI AATATT 1 cut(s) 602
SspMI CTAG 5 cut(s) 179, 438, 450, 528, 708
StyI CCWWGG 1 cut(s) 38
TaqI TCGA 4 cut(s) 28, 189, 252, 633
TasI AATT 1 cut(s) 357
TatI WGTACW 2 cut(s) 321, 494
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 14, 400, 524
Tru1I TTAA 2 cut(s) 470, 718
Tru9I TTAA 2 cut(s) 470, 718
TscAI CASTG 1 cut(s) 613
TseI GCWGC 2 cut(s) 195, 695
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 3 cut(s) 322, 630, 646
TspRI CASTG 1 cut(s) 613
VneI GTGCAC 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 5 cut(s) 179, 438, 450, 528, 708
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.