Rh5AG541300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011299
Physical Location & Seq
Reverse (-)
92916037 .. 92919312
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG541300.1

Sequence Viewer

Length: 726 bp
ATGATGCTTTGCGAAGCATTGCGTGATCGAATACAGGCATGGCTTCGTGACTACGACAGGCTTCAATATTTGGCGATCATCCTCCTCTACATTCAGATTGCGTGCGCATTGGTAGGATCGCTGGGAGCATTGTACAACGGAGTGTTGCTGATCAATCTGGCGATTGCATTGTTCGCTCTGGTCGCAATCGAAAGTAGCAGTCAGAGCCTCGGCCGCACATACGCCGTCCTTCTCGTCTGCGCCATCTTCCTCGATATCTTCTGGTTCATTCTCTTTTGTCACGAAATATGGATTCTTACTACCGGCGATTATACAGCTCTCTATATCTTTTCAGTCAAACTCACTCTCGTCATGCAAATCATCGGCTTTTTTATCAGGTTTTCCTCCTCATTCCTGTGGATTCAGATCTACAGGTTGGGCCTCTCCTACGTAGTAGACCCTGCACCGACTCCTAGAGATGCAGATTTTGATTTGCGAAATAGTTTCTTGAGTCCAACTACTCCCACGCCTGCTGTACTTAGACAAACCTCCGATTCTAGTGATGCCTTAGGAGGCTCTATCTATGATCCAGCTTATTACTCATCACTCTTCGAAGAGAGCCAGGGAAAATGTTTCGGTGGCAATGGATCTACATCTGCTGCTGAAGCTTGTAAGGTGAAACCATCTGTAGTCAGATCTTTTCAGTTCATAGATGAGGAGAAGACAGCAAGCCAGCATTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.85

Weight (kDa)

4.99

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55535 AT1G55535 AT1G55535
fragaria_vesca FvH4_3g45940 FvH4_3g45940
malus_domestica MD03G1001500.v1.1 MD11G1001200.v1.1
prunus_persica Prupe.6G001400_v2.0.a1
pyrus_communis pycom03g00150 pycom11g00140
rosa_chinensis RchiOBHm_Chr5g0084051
rosa_laevigata RLG00000037077
rosa_multiflora Rmu_ssc0000372.1_g000087
rosa_roxburghii Rroxscaffold_1G00000610
rosa_rugosa Rorug05G0488600 Rorug05G0488700
rosa_samantha Rh5AG541300 Rh5BG566600 Rh5CG588600
rosa_wichuraiana Rw5G050340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccI GTMKAC 1 cut(s) 435
AciI CCGC 1 cut(s) 214
AclWI GGATC 3 cut(s) 124, 560, 634
AcoI YGGCCR 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 2 cut(s) 134, 516
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 3 cut(s) 317, 572, 647
AluI AGCT 3 cut(s) 317, 572, 647
AlwI GGATC 3 cut(s) 124, 560, 634
AoxI GGCC 2 cut(s) 211, 418
ApeKI GCWGC 1 cut(s) 638
AspLEI GCGC 2 cut(s) 107, 242
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 667
AsuII TTCGAA 1 cut(s) 591
AxyI CCTNAGG 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 625
BccI CCATC 2 cut(s) 251, 670
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 602
BclI TGATCA 1 cut(s) 150
BfaI CTAG 2 cut(s) 453, 537
BfmI CTRYAG 2 cut(s) 409, 666
BglII AGATCT 2 cut(s) 405, 674
BisI GCNGC 2 cut(s) 214, 639
BlsI GCNGC 2 cut(s) 215, 640
Bme1390I CCNGG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 2 cut(s) 448, 532
BpiI GAAGAC 1 cut(s) 707
Bpu14I TTCGAA 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 508
BsaAI YACGTR 1 cut(s) 430
BsaBI GATNNNNATC 2 cut(s) 404, 631
BsaJI CCNNGG 2 cut(s) 208, 601
Bse118I RCCGGY 1 cut(s) 302
Bse21I CCTNAGG 1 cut(s) 547
Bse3DI GCAATG 2 cut(s) 17, 628
Bse8I GATNNNNATC 2 cut(s) 404, 631
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 208, 601
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 2 cut(s) 404, 631
BseMI GCAATG 2 cut(s) 17, 628
BseRI GAGGAG 3 cut(s) 74, 376, 710
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 625
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 213, 420
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 303
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 2 cut(s) 213, 420
Bsp119I TTCGAA 1 cut(s) 591
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 213, 420
BspPI GGATC 3 cut(s) 124, 560, 634
BspT104I TTCGAA 1 cut(s) 591
BsrDI GCAATG 2 cut(s) 17, 628
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 208, 601
BssMI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
Bst2UI CCWGG 1 cut(s) 602
Bst6I CTCTTC 2 cut(s) 588, 593
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 591
BstC8I GCNNGC 4 cut(s) 103, 510, 709, 713
BstDEI CTNAG 2 cut(s) 518, 547
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 107, 242
BstKTI GATC 8 cut(s) 28, 78, 119, 153, 408, 568, 629, 677
BstMBI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 644
BstNI CCWGG 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 2 cut(s) 409, 666
BstSNI TACGTA 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 625
BstV2I GAAGAC 1 cut(s) 707
BstX2I RGATCY 3 cut(s) 405, 626, 674
BstYI RGATCY 3 cut(s) 405, 626, 674
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 547
BsuRI GGCC 2 cut(s) 213, 420
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 4 cut(s) 103, 510, 709, 713
CfoI GCGC 2 cut(s) 107, 242
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 133, 515
CviAII CATG 2 cut(s) 39, 352
CviQI GTAC 2 cut(s) 133, 515
DdeI CTNAG 2 cut(s) 518, 547
DpnI GATC 8 cut(s) 27, 77, 118, 152, 407, 567, 628, 676
DpnII GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 588, 593
EarI CTCTTC 2 cut(s) 588, 593
EclXI CGGCCG 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 430
Eco32I GATATC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 600
EcoRV GATATC 1 cut(s) 256
FaeI CATG 2 cut(s) 42, 355
FaiI YATR 8 cut(s) 40, 220, 289, 312, 324, 353, 564, 689
FatI CATG 2 cut(s) 38, 351
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 214, 639
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 214, 639
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 2 cut(s) 453, 537
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 106, 241
GluI GCNGC 2 cut(s) 214, 639
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 213, 420
HapII CCGG 1 cut(s) 303
HhaI GCGC 2 cut(s) 107, 242
Hin1II CATG 2 cut(s) 42, 355
Hin6I GCGC 2 cut(s) 105, 240
HinP1I GCGC 2 cut(s) 105, 240
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 5 cut(s) 292, 400, 448, 490, 533
HpaII CCGG 1 cut(s) 303
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 5 cut(s) 96, 204, 405, 532, 674
Hpy188III TCNNGA 3 cut(s) 47, 281, 487
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 4 cut(s) 167, 355, 443, 461
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 644
HpyF3I CTNAG 2 cut(s) 518, 547
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 42, 355
HspAI GCGC 2 cut(s) 105, 240
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 2 cut(s) 448, 532
MaeI CTAG 2 cut(s) 453, 537
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 47, 278
MalI GATC 8 cut(s) 27, 77, 118, 152, 407, 567, 628, 676
MboI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
MboII GAAGA 5 cut(s) 238, 250, 580, 605, 712
MflI RGATCY 3 cut(s) 405, 626, 674
MlyI GAGTC 2 cut(s) 442, 499
MmeI TCCRAC 1 cut(s) 518
MseI TTAA 1 cut(s) 724
MslI CAYNNNNRTG 1 cut(s) 394
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 602
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 5 cut(s) 173, 182, 204, 213, 644
NdeII GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
NlaIII CATG 2 cut(s) 42, 355
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 47, 278
NsbI TGCGCA 1 cut(s) 106
NspV TTCGAA 1 cut(s) 591
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 292, 400, 533
PkrI GCNGC 2 cut(s) 215, 640
PleI GAGTC 2 cut(s) 442, 498
PpsI GAGTC 2 cut(s) 442, 498
Ppu21I YACGTR 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 600
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 600
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 3 cut(s) 405, 626, 674
RsaI GTAC 2 cut(s) 134, 516
RsaNI GTAC 2 cut(s) 133, 515
RseI CAYNNNNRTG 1 cut(s) 394
SaqAI TTAA 1 cut(s) 724
SatI GCNGC 2 cut(s) 214, 639
Sau3AI GATC 8 cut(s) 25, 75, 116, 150, 405, 565, 626, 674
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 2 cut(s) 442, 499
ScrFI CCNGG 1 cut(s) 602
SetI ASST 8 cut(s) 319, 380, 416, 432, 530, 574, 649, 657
SfaNI GCATC 2 cut(s) 448, 532
SfcI CTRYAG 2 cut(s) 409, 666
SfuI TTCGAA 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SnaBI TACGTA 1 cut(s) 430
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 68
SspMI CTAG 2 cut(s) 453, 537
StyD4I CCNGG 1 cut(s) 600
TaiI ACGT 1 cut(s) 432
TaqI TCGA 4 cut(s) 28, 189, 252, 591
TatI WGTACW 2 cut(s) 132, 514
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 292, 400, 533
Tru1I TTAA 1 cut(s) 724
Tru9I TTAA 1 cut(s) 724
TseFI GTSAC 2 cut(s) 47, 278
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 2 cut(s) 47, 278
TspDTI ATGAA 2 cut(s) 256, 676
TspGWI ACGGA 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 2 cut(s) 453, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.