Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007284

Physical Location & Seq

Genomic Coordinates Forward (+)

20907477 .. 20910911

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55915.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAGTTCGGCGAATTTGGAAGATTTGAACAAGGTCTGGGAAATAAAGGCTTTGAAGAGGAAACCTAGAGAAGATGAAGCGAGGAAGATTCTGGAGAAAGTAGCTAATCAGGTTCAGCCGATTATGACTAGACGAAAATGGCGCGTCAAGCTTCTCTCTGAATTCTGCCCAACAAATCCAAGGCTTTTGGGGGTGAATGTAAATAGAGGCGTGCAAGTGAAATTGAGGCTTAGGAGGGTAAACCATGATTTAGATTTCTTATCGTATCATGAAATTCTCGACACCATGCTCCACGAGCTTTGCCACAACGCTCATGGTCCTCATAACGCAAGTTTCTATAAGCTTTGGGATGAACTTCGAAAGGAATGCGAGGAGTTGATGTCAAAGGGTATTACAGGGACGGGACAGGGATTTGATATGCCTGGTAAGCGTTTGGGTGGACTTTCTCGTCAGCCTTCTCTATCATTTCTCAGAGCAACTGCAGCTACAGCAGCAGAAAAAAGAGTGCGTGCGGGAACTCTTTTACCTTCAGGACCTCAACGTCTTGGTGGTGATAGCAGCATTATGTCAGATCTTAGTCCAATTCAGGCTGCTGCAATGGCTGCAGAAAGGCGTTTACTTGATGATATTTGGTGTGGTTCCCAATCCACAGATGCTTTAGAAGATGAAGAGAATGATAGTGACACATATAAGGAACCTGTTTCCATCAGGGAAACTTGTACGAGCGTGAATGGAAAGTCAGTAAAACGATGTAATAGCTGGTCCAATGCCCATTCTTGTCCTCCATCTTCCAGTCATCAACAGGGATCAGATGTCATTGATTTGACTGAAGAATCTTTTGAAATAAGATGTACTAAAAGAAATCGCAGCCCAGGTGATCAGGGTCCTTCTTGTGCCAAAGATGTACCGAACGCTGGTGTCATGAAGTCATCGATTCCTTTGCCATCGACGAGTTACAATGCAAACCAAAGCAGAGAAGAATCCACAATGTGGGAGTGTGCAGAATGCACCTTATTGAACCCGTCATTGGCTCCAATATGTGAGCTATGCACTGCCGCAAAGCCAAAGGAAAGGGAGATGAAGCACAAAGTCTGGTCTTGCAAATTCTGCACGCTTGAAAATGAGGTGAAGTTAGAGAAATGTGAGGCTTGTGGTCAGTGGAGGTACTCGTATGGAGCACCATTGTCAACTGGTGCTCCTAATGTCGGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000724 GO:0000725 GO:0000731 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010225 GO:0012505 GO:0016740 GO:0016787 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019985 GO:0031967 GO:0031975 GO:0032182 GO:0032183 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061659 GO:0061665 GO:0070011 GO:0070647 GO:0071704 GO:0071897 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1990414 GO:1990466

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

404

Amino Acids

44.97

Weight (kDa)

8.07

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WLM	PF08325	65 - 260	2.1e-67	WLM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55915 AT1G55915 AT1G55915 AT1G55915
fragaria_vesca	FvH4_3g29470 FvH4_3g29470 FvH4_3g29470
malus_domestica	MD11G1201700.v1.1
prunus_persica	Prupe.4G239900_v2.0.a1 Prupe.4G239900_v2.0.a1
pyrus_communis	pycom11g17420
rosa_chinensis	RchiOBHm_Chr5g0054021
rosa_laevigata	RLG00000034913
rosa_multiflora	Rmu_sc0023670.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026680
rosa_rugosa	Rorug05G0284900 Rorug05G0285000 Rorug05G0285100 Rorug05G0285200
rosa_samantha	Rh5AG354100 Rh5BG365900 Rh5CG390700 Rh5DG380800
rosa_wichuraiana	Rw0G002070 Rw5G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	447, 540
AccB7I	CCANNNNNTGG	1 cut(s)	990
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	512, 1056
AclWI	GGATC	1 cut(s)	814
AcsI	RAATTY	4 cut(s)	13, 161, 273, 1103
AcuI	CTGAAG	2 cut(s)	513, 849
AdeI	CACNNNGTG	1 cut(s)	990
AfaI	GTAC	4 cut(s)	721, 853, 906, 1166
AfiI	CCNNNNNNNGG	4 cut(s)	914, 990, 1027, 1205
AgsI	TTSAA	5 cut(s)	28, 55, 842, 1018, 1118
AjnI	CCWGG	2 cut(s)	421, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	1010, 1042
AluBI	AGCT	7 cut(s)	104, 151, 298, 343, 485, 759, 1045
AluI	AGCT	7 cut(s)	104, 151, 298, 343, 485, 759, 1045
Alw21I	GWGCWC	2 cut(s)	1180, 1198
AlwI	GGATC	1 cut(s)	814
ApeKI	GCWGC	7 cut(s)	482, 491, 558, 590, 593, 602, 867
ApoI	RAATTY	4 cut(s)	13, 161, 273, 1103
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	4 cut(s)	317, 533, 762, 884
AsuHPI	GGTGA	4 cut(s)	205, 563, 887, 1138
AsuII	TTCGAA	1 cut(s)	358
AvaII	GGWCC	4 cut(s)	317, 533, 762, 884
BauI	CACGAG	1 cut(s)	293
Bbv12I	GWGCWC	2 cut(s)	1180, 1198
BbvI	GCAGC	7 cut(s)	494, 503, 570, 577, 580, 589, 879
BccI	CCATC	3 cut(s)	713, 793, 952
BcgI	CGANNNNNNTGC	4 cut(s)	348, 382, 922, 956
BciT130I	CCWGG	2 cut(s)	423, 873
BclI	TGATCA	1 cut(s)	877
BfaI	CTAG	2 cut(s)	66, 129
BfmI	CTRYAG	3 cut(s)	480, 486, 603
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	8 cut(s)	483, 492, 559, 591, 594, 603, 868, 1056
BlsI	GCNGC	8 cut(s)	484, 493, 560, 592, 595, 604, 869, 1057
Bme1390I	CCNGG	2 cut(s)	423, 873
Bme18I	GGWCC	4 cut(s)	317, 533, 762, 884
BmgT120I	GGNCC	4 cut(s)	317, 533, 762, 884
BmiI	GGNNCC	4 cut(s)	640, 696, 885, 1032
BmrFI	CCNGG	2 cut(s)	423, 873
BmsI	GCATC	1 cut(s)	643
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	179, 871
BsaXI	ACNNNNNCTCC	4 cut(s)	365, 395, 1180, 1210
Bsc4I	CCNNNNNNNGG	4 cut(s)	914, 990, 1027, 1205
Bse1I	ACTGG	2 cut(s)	792, 1195
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	423, 873
BseCI	ATCGAT	1 cut(s)	932
BseDI	CCNNGG	2 cut(s)	179, 871
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	4 cut(s)	914, 990, 1027, 1205
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	2 cut(s)	792, 1195
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	7 cut(s)	494, 503, 570, 577, 580, 589, 879
BsgI	GTGCAG	2 cut(s)	1020, 1093
Bsh1236I	CGCG	1 cut(s)	144
BshVI	ATCGAT	1 cut(s)	932
BsiHKAI	GWGCWC	2 cut(s)	1180, 1198
BslFI	GGGAC	2 cut(s)	412, 417
BslI	CCNNNNNNNGG	4 cut(s)	914, 990, 1027, 1205
BsmFI	GGGAC	2 cut(s)	412, 417
BsmI	GAATGC	2 cut(s)	371, 1010
Bsp119I	TTCGAA	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	1180, 1198
Bsp143I	GATC	3 cut(s)	571, 806, 877
BspACI	CCGC	2 cut(s)	512, 1056
BspCNI	CTCAG	1 cut(s)	483
BspDI	ATCGAT	1 cut(s)	932
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	2 cut(s)	268, 921
BspLI	GGNNCC	4 cut(s)	640, 696, 885, 1032
BspMAI	CTGCAG	2 cut(s)	484, 607
BspPI	GGATC	1 cut(s)	814
BspT104I	TTCGAA	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	792, 1195
BssECI	CCNNGG	2 cut(s)	179, 871
BssMI	GATC	3 cut(s)	571, 806, 877
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	423, 873
Bst6I	CTCTTC	2 cut(s)	50, 663
BstAPI	GCANNNNNTGC	2 cut(s)	602, 1107
BstBI	TTCGAA	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	212, 510, 1112
BstDEI	CTNAG	3 cut(s)	230, 470, 575
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	574, 809, 880
BstMBI	GATC	3 cut(s)	571, 806, 877
BstMWI	GCNNNNNNNGC	9 cut(s)	148, 295, 427, 482, 488, 491, 599, 602, 1107
BstNI	CCWGG	2 cut(s)	423, 873
BstSCI	CCNGG	2 cut(s)	421, 871
BstSFI	CTRYAG	3 cut(s)	480, 486, 603
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	7 cut(s)	494, 503, 570, 577, 580, 589, 879
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	932
BsuTUI	ATCGAT	1 cut(s)	932
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	2 cut(s)	1050, 1163
Cac8I	GCNNGC	3 cut(s)	212, 510, 1112
CciI	TCATGA	2 cut(s)	268, 921
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	4 cut(s)	317, 533, 762, 884
ClaI	ATCGAT	1 cut(s)	932
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	720, 852, 905, 1165
CspCI	CAANNNNNGTGG	2 cut(s)	281, 316
CviAII	CATG	5 cut(s)	245, 269, 286, 314, 922
CviQI	GTAC	4 cut(s)	720, 852, 905, 1165
DdeI	CTNAG	3 cut(s)	230, 470, 575
DpnI	GATC	3 cut(s)	573, 808, 879
DpnII	GATC	3 cut(s)	571, 806, 877
DraIII	CACNNNGTG	1 cut(s)	990
DrdI	GACNNNNNNGTC	2 cut(s)	447, 540
DseDI	GACNNNNNNGTC	2 cut(s)	447, 540
Eam1104I	CTCTTC	2 cut(s)	50, 663
EarI	CTCTTC	2 cut(s)	50, 663
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	4 cut(s)	317, 533, 762, 884
Eco57I	CTGAAG	2 cut(s)	513, 849
EcoO109I	RGGNCCY	2 cut(s)	533, 884
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	421, 871
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	5 cut(s)	248, 272, 289, 317, 925
FaqI	GGGAC	2 cut(s)	412, 417
FatI	CATG	5 cut(s)	244, 268, 285, 313, 921
FauI	CCCGC	1 cut(s)	505
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	8 cut(s)	483, 492, 559, 591, 594, 603, 868, 1056
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	8 cut(s)	483, 492, 559, 591, 594, 603, 868, 1056
FspBI	CTAG	2 cut(s)	66, 129
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	8 cut(s)	483, 492, 559, 591, 594, 603, 868, 1056
GsuI	CTGGAG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	248, 272, 289, 317, 925
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	1188
HindII	GTYRAC	1 cut(s)	1188
HindIII	AAGCTT	2 cut(s)	149, 341
HinfI	GANTC	4 cut(s)	88, 833, 934, 980
HphI	GGTGA	4 cut(s)	205, 563, 887, 1138
Hpy166II	GTNNAC	4 cut(s)	241, 440, 617, 1188
Hpy188I	TCNGA	4 cut(s)	160, 473, 571, 811
Hpy188III	TCNNGA	5 cut(s)	92, 269, 278, 531, 922
Hpy8I	GTNNAC	4 cut(s)	241, 440, 617, 1188
Hpy99I	CGWCG	1 cut(s)	952
HpyAV	CCTTC	3 cut(s)	465, 537, 897
HpyCH4IV	ACGT	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	9 cut(s)	148, 295, 427, 482, 488, 491, 599, 602, 1107
HpyF3I	CTNAG	3 cut(s)	230, 470, 575
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	5 cut(s)	248, 272, 289, 317, 925
HspAI	GCGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	3 cut(s)	571, 806, 877
LmnI	GCTCC	4 cut(s)	294, 1036, 1175, 1201
Lsp1109I	GCAGC	7 cut(s)	494, 503, 570, 577, 580, 589, 879
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	2 cut(s)	66, 129
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	680, 953
MalI	GATC	3 cut(s)	573, 808, 879
MboI	GATC	3 cut(s)	571, 806, 877
MboII	GAAGA	9 cut(s)	32, 67, 83, 97, 674, 680, 780, 842, 989
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	2 cut(s)	1180, 1198
MluCI	AATT	6 cut(s)	13, 161, 221, 273, 582, 1103
MspR9I	CCNGG	2 cut(s)	423, 873
Mva1269I	GAATGC	2 cut(s)	371, 1010
MvaI	CCWGG	2 cut(s)	423, 873
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	9 cut(s)	148, 295, 427, 482, 488, 491, 599, 602, 1107
NdeII	GATC	3 cut(s)	571, 806, 877
NlaIII	CATG	5 cut(s)	248, 272, 289, 317, 925
NlaIV	GGNNCC	4 cut(s)	640, 696, 885, 1032
NmuCI	GTSAC	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	358
PagI	TCATGA	2 cut(s)	268, 921
PctI	GAATGC	2 cut(s)	371, 1010
PfeI	GAWTC	4 cut(s)	88, 833, 934, 980
PflMI	CCANNNNNTGG	1 cut(s)	990
PkrI	GCNGC	8 cut(s)	484, 493, 560, 592, 595, 604, 869, 1057
PpuMI	RGGWCCY	2 cut(s)	533, 884
Psp5II	RGGWCCY	2 cut(s)	533, 884
Psp6I	CCWGG	2 cut(s)	421, 871
PspGI	CCWGG	2 cut(s)	421, 871
PspN4I	GGNNCC	4 cut(s)	640, 696, 885, 1032
PspPI	GGNCC	4 cut(s)	317, 533, 762, 884
PspPPI	RGGWCCY	2 cut(s)	533, 884
PstI	CTGCAG	2 cut(s)	484, 607
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	4 cut(s)	721, 853, 906, 1166
RsaNI	GTAC	4 cut(s)	720, 852, 905, 1165
SatI	GCNGC	8 cut(s)	483, 492, 559, 591, 594, 603, 868, 1056
Sau3AI	GATC	3 cut(s)	571, 806, 877
Sau96I	GGNCC	4 cut(s)	317, 533, 762, 884
ScrFI	CCNGG	2 cut(s)	423, 873
SduI	GDGCHC	2 cut(s)	1180, 1198
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	3 cut(s)	480, 486, 603
SfuI	TTCGAA	1 cut(s)	358
SinI	GGWCC	4 cut(s)	317, 533, 762, 884
Sse9I	AATT	6 cut(s)	13, 161, 221, 273, 582, 1103
SsiI	CCGC	2 cut(s)	512, 1056
SspMI	CTAG	2 cut(s)	66, 129
StyD4I	CCNGG	2 cut(s)	421, 871
StyI	CCWWGG	1 cut(s)	179
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	4 cut(s)	279, 358, 932, 947
TasI	AATT	6 cut(s)	13, 161, 221, 273, 582, 1103
TatI	WGTACW	1 cut(s)	851
TauI	GCSGC	1 cut(s)	1058
TfiI	GAWTC	4 cut(s)	88, 833, 934, 980
TscAI	CASTG	2 cut(s)	1057, 1163
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	7 cut(s)	482, 491, 558, 590, 593, 602, 867
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	6 cut(s)	90, 285, 366, 681, 938, 1094
TspRI	CASTG	2 cut(s)	1057, 1163
Van91I	CCANNNNNTGG	1 cut(s)	990
VpaK11BI	GGWCC	4 cut(s)	317, 533, 762, 884
XapI	RAATTY	4 cut(s)	13, 161, 273, 1103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	2 cut(s)	66, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.