Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023670.1

Orthogroup ID

OG0007284

Physical Location & Seq

Genomic Coordinates Reverse (-)

15872 .. 19674

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023670.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atgaattcgggcgacttgaacaaggtgtgggagatcagagcgctgaaaagaaaggatcggcaggaggaagccagcaagatgctagacaaaatcgccaagcaggtgtgggagatcagagcgctgaaaagaaaggatcggcaggaggaagccagcaagatgctagacaaaatcgccaaacaggtccagcccattatgcgcaaacacaaatggcgtgtcaagcttctctctgagatgtgcccaaccaatccttctcttctcgggttgaatgtgaaccgcggtgtgcatgtgaagctgaggctgcgtaggccgaatagggatttggatttctatccctttgatcaagttcttgatacaatgcttcacgagctttgccacaatgttcacggtcctcatgatgccaaattctacaagctatgggatgaacttaggaaggaatgtgaggagctgatgactaagggtgtaactggcactgcagaggggtttgatcttccagggaggcgtttgggtagtgttacacgtcaaccccctctttcatctctccgcaaaactgcacttgctgctgcagaaaagagagcggttttgggatctttgatgccatctggacctaagcgtcttggtggtgatagctctatgatggctgcacttagtccggtgcaagccgctgcaatggctgccgagagaagattgcaggatgatatctggtgtggttcagcatttgctggagcttctgaggatggagaatgcaactctggtacatcagaggactgtgaaaacataggtgcaagtgcaggaagttcaaggcttcacaatagtgcaaaagtacaatcctcagatacattaccacaaaaaagaagtcgcatacctaataagaacacttcttctcgatcatccaaagtccatttaggatctgagtttgtagatctatccaacgacgactctatatctggttctgacatgagatctcagaaaagaagtcgtgaatcagaaaccagttcattccctctatccaatagtcatctagaatctagttttgtggatttgttgggtatttcaacctctgggtccgaacctaataatgatggaacacataatcttggagaatctgctatgtggcagtgtggaacatgcactttgttaaatccgccattagctccagtatgcgagctttgtagcacacagagaccaaaagatgttggtacaagttacaaaatctggtcatgtaaattctgcactttggaaaacagtgtgaagttggagaaatgctcagcatgcggacagtggagatactcgcatggtccaccaattgcaacccaaccaccaaatctgggcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000724 GO:0000725 GO:0000731 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010225 GO:0012505 GO:0016740 GO:0016787 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019985 GO:0031967 GO:0031975 GO:0032182 GO:0032183 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061659 GO:0061665 GO:0070011 GO:0070647 GO:0071704 GO:0071897 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1990414 GO:1990466

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

444

Amino Acids

49.07

Weight (kDa)

8.91

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55915 AT1G55915 AT1G55915 AT1G55915
fragaria_vesca	FvH4_3g29470 FvH4_3g29470 FvH4_3g29470
malus_domestica	MD11G1201700.v1.1
prunus_persica	Prupe.4G239900_v2.0.a1 Prupe.4G239900_v2.0.a1
pyrus_communis	pycom11g17420
rosa_chinensis	RchiOBHm_Chr5g0054021
rosa_laevigata	RLG00000034913
rosa_multiflora	Rmu_sc0023670.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026680
rosa_rugosa	Rorug05G0284900 Rorug05G0285000 Rorug05G0285100 Rorug05G0285200
rosa_samantha	Rh5AG354100 Rh5BG365900 Rh5CG390700 Rh5DG380800
rosa_wichuraiana	Rw0G002070 Rw5G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
AasI	GACNNNNNNGTC	1 cut(s)	609
Acc16I	TGCGCA	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	575
AccII	CGCG	1 cut(s)	276
AciI	CCGC	7 cut(s)	274, 276, 541, 575, 660, 1142, 1272
AclWI	GGATC	4 cut(s)	63, 141, 592, 913
AcsI	RAATTY	3 cut(s)	4, 401, 1223
AfaI	GTAC	3 cut(s)	754, 822, 1198
AfeI	AGCGCT	2 cut(s)	42, 120
AfiI	CCNNNNNNNGG	1 cut(s)	1325
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	4 cut(s)	19, 265, 798, 1053
AjiI	CACGTC	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	4 cut(s)	232, 264, 302, 334
AleI	CACNNNNGTG	1 cut(s)	810
AluBI	AGCT	9 cut(s)	220, 292, 367, 412, 445, 627, 725, 1151, 1165
AluI	AGCT	9 cut(s)	220, 292, 367, 412, 445, 627, 725, 1151, 1165
Alw26I	GTCTC	1 cut(s)	1174
AlwI	GGATC	4 cut(s)	63, 141, 592, 913
Ama87I	CYCGRG	1 cut(s)	257
Aor51HI	AGCGCT	2 cut(s)	42, 120
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	6 cut(s)	298, 557, 560, 638, 662, 671
ApoI	RAATTY	3 cut(s)	4, 401, 1223
ArsI	GACNNNNNNTTYG	4 cut(s)	198, 230, 838, 870
AspLEI	GCGC	3 cut(s)	43, 121, 198
AspS9I	GGNCC	5 cut(s)	181, 386, 602, 1062, 1295
AsuHPI	GGTGA	1 cut(s)	632
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	5 cut(s)	181, 386, 602, 1062, 1295
BaeGI	GKGCMC	2 cut(s)	239, 1331
BauI	CACGAG	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	6 cut(s)	285, 544, 547, 625, 649, 658
BccI	CCATC	4 cut(s)	604, 628, 728, 1073
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	1174
BfaI	CTAG	4 cut(s)	83, 161, 1019, 1026
BfmI	CTRYAG	2 cut(s)	471, 561
BfoI	RGCGCY	2 cut(s)	44, 122
BfuAI	ACCTGC	1 cut(s)	91
BglII	AGATCT	2 cut(s)	919, 959
BisI	GCNGC	7 cut(s)	299, 558, 561, 639, 660, 663, 672
BlpI	GCTNAGC	1 cut(s)	1264
BlsI	GCNGC	7 cut(s)	300, 559, 562, 640, 661, 664, 673
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	5 cut(s)	181, 386, 602, 1062, 1295
BmeT110I	CYCGRG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	518
BmgT120I	GGNCC	5 cut(s)	181, 386, 602, 1062, 1295
BmiI	GGNNCC	1 cut(s)	1063
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	4 cut(s)	69, 147, 385, 582
BplI	GAGNNNNNCTC	2 cut(s)	1247, 1279
BpmI	CTGGAG	2 cut(s)	741, 1137
Bpu10I	CCTNAGC	2 cut(s)	293, 606
Bpu1102I	GCTNAGC	1 cut(s)	1264
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	1174
BsaJI	CCNNGG	2 cut(s)	274, 491
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	1325
Bse1I	ACTGG	3 cut(s)	469, 990, 1154
Bse3DI	GCAATG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	274, 491
BseGI	GGATG	4 cut(s)	424, 697, 739, 887
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	1325
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	7 cut(s)	219, 284, 720, 843, 900, 977, 1278
BseNI	ACTGG	3 cut(s)	469, 990, 1154
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	2 cut(s)	239, 1331
BseXI	GCAGC	6 cut(s)	285, 544, 547, 625, 649, 658
BsgI	GTGCAG	4 cut(s)	534, 624, 807, 1213
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	1325
BsmAI	GTCTC	1 cut(s)	1174
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	1174
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	239, 1331
Bsp1720I	GCTNAGC	1 cut(s)	1264
BspACI	CCGC	7 cut(s)	274, 276, 541, 575, 660, 1142, 1272
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	7 cut(s)	220, 285, 721, 842, 901, 976, 1277
BspFNI	CGCG	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	1063
BspMAI	CTGCAG	2 cut(s)	475, 565
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	4 cut(s)	63, 141, 592, 913
BspTNI	GGTCTC	1 cut(s)	1174
BsrBI	CCGCTC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	469, 990, 1154
BssECI	CCNNGG	2 cut(s)	274, 491
BssSI	CACGAG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	4 cut(s)	386, 767, 1244, 1278
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	2 cut(s)	557, 671
BstC8I	GCNNGC	5 cut(s)	73, 151, 657, 1163, 1270
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	4 cut(s)	424, 697, 739, 887
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	2 cut(s)	44, 122
BstHHI	GCGC	3 cut(s)	43, 121, 198
BstMAI	GTCTC	1 cut(s)	1174
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	3 cut(s)	287, 1128, 1272
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	2 cut(s)	471, 561
BstSLI	GKGCMC	2 cut(s)	239, 1331
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	6 cut(s)	285, 544, 547, 625, 649, 658
BstX2I	RGATCY	4 cut(s)	584, 905, 919, 959
BstYI	RGATCY	4 cut(s)	584, 905, 919, 959
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	518
BtsCI	GGATG	4 cut(s)	424, 697, 739, 887
BtsI	GCAGTG	2 cut(s)	468, 1121
BtsIMutI	CAGTG	4 cut(s)	468, 1121, 1249, 1283
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	5 cut(s)	73, 151, 657, 1163, 1270
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	3 cut(s)	43, 121, 198
Cfr13I	GGNCC	5 cut(s)	181, 386, 602, 1062, 1295
Cfr42I	CCGCGG	1 cut(s)	277
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	753, 821, 1197
CviAII	CATG	7 cut(s)	284, 392, 955, 1125, 1218, 1269, 1292
CviQI	GTAC	3 cut(s)	753, 821, 1197
DrdI	GACNNNNNNGTC	1 cut(s)	609
DseDI	GACNNNNNNGTC	1 cut(s)	609
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	1131
Eco31I	GGTCTC	1 cut(s)	1174
Eco32I	GATATC	1 cut(s)	697
Eco47I	GGWCC	5 cut(s)	181, 386, 602, 1062, 1295
Eco47III	AGCGCT	2 cut(s)	42, 120
Eco88I	CYCGRG	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	697
FaeI	CATG	7 cut(s)	287, 395, 958, 1128, 1221, 1272, 1295
FatI	CATG	7 cut(s)	283, 391, 954, 1124, 1217, 1268, 1291
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	7 cut(s)	299, 558, 561, 639, 660, 663, 672
FokI	GGATG	4 cut(s)	431, 704, 746, 874
Fsp4HI	GCNGC	7 cut(s)	299, 558, 561, 639, 660, 663, 672
FspBI	CTAG	4 cut(s)	83, 161, 1019, 1026
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	3 cut(s)	42, 120, 197
GluI	GCNGC	7 cut(s)	299, 558, 561, 639, 660, 663, 672
GsuI	CTGGAG	2 cut(s)	741, 1137
HaeII	RGCGCY	2 cut(s)	44, 122
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	650
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	3 cut(s)	43, 121, 198
Hin1II	CATG	7 cut(s)	287, 395, 958, 1128, 1221, 1272, 1295
Hin6I	GCGC	3 cut(s)	41, 119, 196
HinP1I	GCGC	3 cut(s)	41, 119, 196
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	4 cut(s)	935, 980, 1022, 1100
HpaII	CCGG	1 cut(s)	650
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	4 cut(s)	271, 382, 521, 1298
Hpy188III	TCNNGA	7 cut(s)	347, 362, 392, 600, 882, 977, 1019
Hpy8I	GTNNAC	4 cut(s)	271, 382, 521, 1298
Hpy99I	CGWCG	1 cut(s)	935
HpyAV	CCTTC	2 cut(s)	258, 424
HpyCH4III	ACNGT	4 cut(s)	386, 767, 1244, 1278
HpyCH4IV	ACGT	1 cut(s)	517
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	7 cut(s)	287, 395, 958, 1128, 1221, 1272, 1295
HspAI	GCGC	3 cut(s)	41, 119, 196
Ksp22I	TGATCA	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	442, 722, 1156
Lsp1109I	GCAGC	6 cut(s)	285, 544, 547, 625, 649, 658
LweI	GCATC	4 cut(s)	69, 147, 385, 582
MaeI	CTAG	4 cut(s)	83, 161, 1019, 1026
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	3 cut(s)	460, 511, 1202
MbiI	CCGCTC	1 cut(s)	575
MboII	GAAGA	4 cut(s)	245, 479, 693, 870
MfeI	CAATTG	1 cut(s)	1302
MflI	RGATCY	4 cut(s)	584, 905, 919, 959
MhlI	GDGCHC	2 cut(s)	239, 1331
MluCI	AATT	4 cut(s)	4, 401, 1223, 1302
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	2 cut(s)	951, 1233
MseI	TTAA	1 cut(s)	1136
MslI	CAYNNNNRTG	1 cut(s)	810
MspA1I	CMGCKG	2 cut(s)	276, 662
MspI	CCGG	1 cut(s)	650
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	1302
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	276
NlaIII	CATG	7 cut(s)	287, 395, 958, 1128, 1221, 1272, 1295
NlaIV	GGNNCC	1 cut(s)	1063
NmeAIII	GCCGAG	1 cut(s)	700
NsbI	TGCGCA	1 cut(s)	197
NspI	RCATGY	3 cut(s)	287, 1128, 1272
OliI	CACNNNNGTG	1 cut(s)	810
PaeI	GCATGC	1 cut(s)	1272
PagI	TCATGA	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	91
PctI	GAATGC	1 cut(s)	746
PfeI	GAWTC	3 cut(s)	980, 1022, 1100
PkrI	GCNGC	7 cut(s)	300, 559, 562, 640, 661, 664, 673
PleI	GAGTC	1 cut(s)	929
PpsI	GAGTC	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	1063
PspPI	GGNCC	5 cut(s)	181, 386, 602, 1062, 1295
PstI	CTGCAG	2 cut(s)	475, 565
PsuI	RGATCY	4 cut(s)	584, 905, 919, 959
RsaI	GTAC	3 cut(s)	754, 822, 1198
RsaNI	GTAC	3 cut(s)	753, 821, 1197
RseI	CAYNNNNRTG	1 cut(s)	810
SacII	CCGCGG	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	1136
SatI	GCNGC	7 cut(s)	299, 558, 561, 639, 660, 663, 672
Sau96I	GGNCC	5 cut(s)	181, 386, 602, 1062, 1295
SchI	GAGTC	1 cut(s)	929
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	2 cut(s)	239, 1331
SfaNI	GCATC	4 cut(s)	69, 147, 385, 582
SfcI	CTRYAG	2 cut(s)	471, 561
Sfr303I	CCGCGG	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	277
SinI	GGWCC	5 cut(s)	181, 386, 602, 1062, 1295
SmiMI	CAYNNNNRTG	1 cut(s)	810
SphI	GCATGC	1 cut(s)	1272
Sse9I	AATT	4 cut(s)	4, 401, 1223, 1302
SsiI	CCGC	7 cut(s)	274, 276, 541, 575, 660, 1142, 1272
SspMI	CTAG	4 cut(s)	83, 161, 1019, 1026
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	4 cut(s)	386, 767, 1244, 1278
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	1 cut(s)	883
TasI	AATT	4 cut(s)	4, 401, 1223, 1302
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	3 cut(s)	980, 1022, 1100
Tru1I	TTAA	1 cut(s)	1136
Tru9I	TTAA	1 cut(s)	1136
TscAI	CASTG	4 cut(s)	475, 1121, 1249, 1283
TseI	GCWGC	6 cut(s)	298, 557, 560, 638, 662, 671
TspDTI	ATGAA	4 cut(s)	17, 435, 522, 984
TspRI	CASTG	4 cut(s)	475, 1121, 1249, 1283
VpaK11BI	GGWCC	5 cut(s)	181, 386, 602, 1062, 1295
XapI	RAATTY	3 cut(s)	4, 401, 1223
XbaI	TCTAGA	1 cut(s)	1018
XceI	RCATGY	3 cut(s)	287, 1128, 1272
XspI	CTAG	4 cut(s)	83, 161, 1019, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.