Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007284

Physical Location & Seq

Genomic Coordinates Forward (+)

51481997 .. 51488271

Gene Structure 6275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG390700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACTAAGGGTGTAACTGGCACTGCGGAGGGGTTTGATCTTCCAGGGAGGCGTTTGGGAAGTGTTACATGTCAACCCCCTCTTTCATCTCTCCGCAAAACTGCACTTGCTGCTGCAGAAAAGAGAGCGGTTTTGGGATCTTTGATGCCATCTGGACCTAAGCGTCTTGGTGGTGATAGCTCTATGATGGCTGCACTTAGTCCGGTGCAAGCTGCTGCAATGGCTGCCGAGAGAAGATTGCAGGATGATATCTGGTGTGGTTCAGCATTTGCTGGAGCTTCCGAGGATGGAGAATGCAACTCTGGTACATCAGAGGACTGTGAAAACATAGGTGCAACTGCAGGAAGTTCAAGGCTTCACAATGGTGCAAAAGTACAATCCTCAGATACATTACCACAAAAAAGAAGTCGCATACCTAATAAGAACACTTCTTCTCAATCATCCAAAGTCCATTTAGGATCCGAGTTTGTAGATCTATCCAACGACGACTCTGTATCTGGTTCTGACATGAGATCTCAGAAAAGAAGTCGTGAATCAGAAACCAGTTCATTCCCTCTATCCAATCGTCATCTAGAATCTAGTTTTGTGGATTCGTTGGGTATTTCAACCTCTGGGTCCGAACCTAATAATGATGGAACACATAATCTTGAAGAATCTGCTATGTGGCAGTGTGGAACATGCACTTTGTTAAATCCGCCATTAGCTCCAGTATGCGAGCTTTGTAGCACACAGAGACCAAAAGATGTTGGTACAAGTTACAAAATCTGGTCATGTAAATTCTGCACTTTGGAAAACAGTGTGAAGTTGGAGAAATGCTCAGCATGCGGACAGTGGAGATACTCGCATGGTCCACCAATTGCAACCCAACCACCAAATCTGGGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000724 GO:0000725 GO:0000731 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010225 GO:0012505 GO:0016740 GO:0016787 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019985 GO:0031967 GO:0031975 GO:0032182 GO:0032183 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061659 GO:0061665 GO:0070011 GO:0070647 GO:0071704 GO:0071897 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1990414 GO:1990466

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

295

Amino Acids

31.21

Weight (kDa)

6.53

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55915 AT1G55915 AT1G55915 AT1G55915
fragaria_vesca	FvH4_3g29470 FvH4_3g29470 FvH4_3g29470
malus_domestica	MD11G1201700.v1.1
prunus_persica	Prupe.4G239900_v2.0.a1 Prupe.4G239900_v2.0.a1
pyrus_communis	pycom11g17420
rosa_chinensis	RchiOBHm_Chr5g0054021
rosa_laevigata	RLG00000034913
rosa_multiflora	Rmu_sc0023670.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026680
rosa_rugosa	Rorug05G0284900 Rorug05G0285000 Rorug05G0285100 Rorug05G0285200
rosa_samantha	Rh5AG354100 Rh5BG365900 Rh5CG390700 Rh5DG380800
rosa_wichuraiana	Rw0G002070 Rw5G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	5 cut(s)	26, 94, 128, 695, 825
AclWI	GGATC	3 cut(s)	145, 453, 466
AcsI	RAATTY	1 cut(s)	776
AfaI	GTAC	3 cut(s)	307, 375, 751
AfiI	CCNNNNNNNGG	1 cut(s)	878
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	351, 606, 650
AjnI	CCWGG	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	363
AluBI	AGCT	5 cut(s)	180, 212, 278, 704, 718
AluI	AGCT	5 cut(s)	180, 212, 278, 704, 718
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	3 cut(s)	145, 453, 466
ApeKI	GCWGC	6 cut(s)	110, 113, 191, 212, 215, 224
ApoI	RAATTY	1 cut(s)	776
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
AspS9I	GGNCC	3 cut(s)	155, 615, 848
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	155, 615, 848
BaeGI	GKGCMC	1 cut(s)	884
BamHI	GGATCC	1 cut(s)	458
BbvI	GCAGC	6 cut(s)	97, 100, 178, 199, 202, 211
BccI	CCATC	4 cut(s)	157, 181, 281, 626
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	2 cut(s)	572, 579
BfmI	CTRYAG	2 cut(s)	114, 339
BglII	AGATCT	2 cut(s)	472, 512
BisI	GCNGC	6 cut(s)	111, 114, 192, 213, 216, 225
BlpI	GCTNAGC	1 cut(s)	817
BlsI	GCNGC	6 cut(s)	112, 115, 193, 214, 217, 226
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	3 cut(s)	155, 615, 848
BmgT120I	GGNCC	3 cut(s)	155, 615, 848
BmiI	GGNNCC	2 cut(s)	460, 616
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BpmI	CTGGAG	2 cut(s)	294, 690
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	817
BsaI	GGTCTC	1 cut(s)	727
BsaJI	CCNNGG	2 cut(s)	44, 282
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	3 cut(s)	22, 543, 707
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	44, 282
BseGI	GGATG	3 cut(s)	250, 292, 440
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	396, 530, 831
BseNI	ACTGG	3 cut(s)	22, 543, 707
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	6 cut(s)	97, 100, 178, 199, 202, 211
BsgI	GTGCAG	3 cut(s)	87, 177, 766
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	1 cut(s)	727
BsmI	GAATGC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	5 cut(s)	37, 137, 458, 472, 512
Bsp1720I	GCTNAGC	1 cut(s)	817
BspACI	CCGC	5 cut(s)	26, 94, 128, 695, 825
BspCNI	CTCAG	3 cut(s)	395, 529, 830
BspLI	GGNNCC	2 cut(s)	460, 616
BspMAI	CTGCAG	2 cut(s)	118, 343
BspPI	GGATC	3 cut(s)	145, 453, 466
BspTNI	GGTCTC	1 cut(s)	727
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	22, 543, 707
BssECI	CCNNGG	2 cut(s)	44, 282
BssMI	GATC	5 cut(s)	37, 137, 458, 472, 512
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	320, 797, 831
BstAPI	GCANNNNNTGC	2 cut(s)	110, 224
BstC8I	GCNNGC	3 cut(s)	210, 716, 823
BstDEI	CTNAG	6 cut(s)	6, 159, 197, 382, 516, 817
BstF5I	GGATG	3 cut(s)	250, 292, 440
BstKTI	GATC	5 cut(s)	40, 140, 461, 475, 515
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	5 cut(s)	37, 137, 458, 472, 512
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 221, 224, 822
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	3 cut(s)	72, 681, 825
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	2 cut(s)	114, 339
BstSLI	GKGCMC	1 cut(s)	884
BstV1I	GCAGC	6 cut(s)	97, 100, 178, 199, 202, 211
BstX2I	RGATCY	4 cut(s)	137, 458, 472, 512
BstYI	RGATCY	4 cut(s)	137, 458, 472, 512
BtsCI	GGATG	3 cut(s)	250, 292, 440
BtsI	GCAGTG	2 cut(s)	21, 674
BtsIMutI	CAGTG	4 cut(s)	21, 674, 802, 836
Cac8I	GCNNGC	3 cut(s)	210, 716, 823
Cfr13I	GGNCC	3 cut(s)	155, 615, 848
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	306, 374, 750
CviAII	CATG	6 cut(s)	69, 508, 678, 771, 822, 845
CviJI	RGCY	8 cut(s)	180, 191, 212, 224, 278, 355, 704, 718
CviKI_1	RGCY	8 cut(s)	180, 191, 212, 224, 278, 355, 704, 718
CviQI	GTAC	3 cut(s)	306, 374, 750
DdeI	CTNAG	6 cut(s)	6, 159, 197, 382, 516, 817
DpnI	GATC	5 cut(s)	39, 139, 460, 474, 514
DpnII	GATC	5 cut(s)	37, 137, 458, 472, 512
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	727
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	3 cut(s)	155, 615, 848
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	6 cut(s)	72, 511, 681, 774, 825, 848
FatI	CATG	6 cut(s)	68, 507, 677, 770, 821, 844
Fnu4HI	GCNGC	6 cut(s)	111, 114, 192, 213, 216, 225
FokI	GGATG	3 cut(s)	257, 299, 427
Fsp4HI	GCNGC	6 cut(s)	111, 114, 192, 213, 216, 225
FspBI	CTAG	2 cut(s)	572, 579
GluI	GCNGC	6 cut(s)	111, 114, 192, 213, 216, 225
GsuI	CTGGAG	2 cut(s)	294, 690
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	6 cut(s)	72, 511, 681, 774, 825, 848
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	5 cut(s)	488, 533, 575, 590, 653
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	74, 851
Hpy188I	TCNGA	8 cut(s)	283, 313, 385, 463, 505, 519, 538, 619
Hpy188III	TCNNGA	4 cut(s)	153, 530, 572, 647
Hpy8I	GTNNAC	2 cut(s)	74, 851
Hpy99I	CGWCG	1 cut(s)	488
HpyCH4III	ACNGT	3 cut(s)	320, 797, 831
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 221, 224, 822
HpyF3I	CTNAG	6 cut(s)	6, 159, 197, 382, 516, 817
Hsp92II	CATG	6 cut(s)	72, 511, 681, 774, 825, 848
Kzo9I	GATC	5 cut(s)	37, 137, 458, 472, 512
LmnI	GCTCC	2 cut(s)	275, 709
Lsp1109I	GCAGC	6 cut(s)	97, 100, 178, 199, 202, 211
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	2 cut(s)	572, 579
MaeIII	GTNAC	3 cut(s)	13, 64, 755
MalI	GATC	5 cut(s)	39, 139, 460, 474, 514
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	5 cut(s)	37, 137, 458, 472, 512
MboII	GAAGA	4 cut(s)	32, 246, 423, 662
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	4 cut(s)	137, 458, 472, 512
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	2 cut(s)	776, 855
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	504, 786
MnlI	CCTC	8 cut(s)	22, 42, 90, 277, 307, 391, 564, 619
MseI	TTAA	1 cut(s)	689
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	110, 221, 224, 822
NdeII	GATC	5 cut(s)	37, 137, 458, 472, 512
NlaIII	CATG	6 cut(s)	72, 511, 681, 774, 825, 848
NlaIV	GGNNCC	2 cut(s)	460, 616
NmeAIII	GCCGAG	1 cut(s)	253
NspI	RCATGY	3 cut(s)	72, 681, 825
OliI	CACNNNNGTG	1 cut(s)	363
PaeI	GCATGC	1 cut(s)	825
PciI	ACATGT	1 cut(s)	68
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	533, 575, 590, 653
PkrI	GCNGC	6 cut(s)	112, 115, 193, 214, 217, 226
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PscI	ACATGT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	460, 616
PspPI	GGNCC	3 cut(s)	155, 615, 848
PstI	CTGCAG	2 cut(s)	118, 343
PsuI	RGATCY	4 cut(s)	137, 458, 472, 512
RsaI	GTAC	3 cut(s)	307, 375, 751
RsaNI	GTAC	3 cut(s)	306, 374, 750
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	6 cut(s)	111, 114, 192, 213, 216, 225
Sau3AI	GATC	5 cut(s)	37, 137, 458, 472, 512
Sau96I	GGNCC	3 cut(s)	155, 615, 848
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	2 cut(s)	114, 339
SinI	GGWCC	3 cut(s)	155, 615, 848
SmiMI	CAYNNNNRTG	1 cut(s)	363
SphI	GCATGC	1 cut(s)	825
Sse9I	AATT	2 cut(s)	776, 855
SsiI	CCGC	5 cut(s)	26, 94, 128, 695, 825
SspMI	CTAG	2 cut(s)	572, 579
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	3 cut(s)	320, 797, 831
TasI	AATT	2 cut(s)	776, 855
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	4 cut(s)	533, 575, 590, 653
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	4 cut(s)	28, 674, 802, 836
TseI	GCWGC	6 cut(s)	110, 113, 191, 212, 215, 224
TspDTI	ATGAA	2 cut(s)	75, 537
TspRI	CASTG	4 cut(s)	28, 674, 802, 836
VpaK11BI	GGWCC	3 cut(s)	155, 615, 848
XapI	RAATTY	1 cut(s)	776
XbaI	TCTAGA	1 cut(s)	571
XceI	RCATGY	3 cut(s)	72, 681, 825
XspI	CTAG	2 cut(s)	572, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.