Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007284

Physical Location & Seq

Genomic Coordinates Forward (+)

32716855 .. 32717355

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0284900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTTTACAGGCGGAGCAATACCAGGTGGACTCCCACTCCAAATCGGATAAGAATCCACAATGAGCTTTTCTATAGCAAGGGAGTTAGGTCCCCAACCGTAGAGCAGAACCACAAGGCTCGGGATAAACGGAAGAAGATCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGGATCCATTAATCTTAATTTTTGGTCAACTAGCTCTACGGTTGTGGAACAGCGAGGAGAAGATCACCAGGCGATTGAAACTCTTCCACTGTTCCCCATGCACAGTGAAGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGCTATGGCGATTACTCTAGCGGCTACAACGATGGTTCTCGCATTTCCCTTGAGCTCAGCCTCAACTTCTCCGGAGCTGCTGGCGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000724 GO:0000725 GO:0000731 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010225 GO:0012505 GO:0016740 GO:0016787 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019985 GO:0031967 GO:0031975 GO:0032182 GO:0032183 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061659 GO:0061665 GO:0070011 GO:0070647 GO:0071704 GO:0071897 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1990414 GO:1990466

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

142

Amino Acids

15.83

Weight (kDa)

9.0

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55915 AT1G55915 AT1G55915 AT1G55915
fragaria_vesca	FvH4_3g29470 FvH4_3g29470 FvH4_3g29470
malus_domestica	MD11G1201700.v1.1
prunus_persica	Prupe.4G239900_v2.0.a1 Prupe.4G239900_v2.0.a1
pyrus_communis	pycom11g17420
rosa_chinensis	RchiOBHm_Chr5g0054021
rosa_laevigata	RLG00000034913
rosa_multiflora	Rmu_sc0023670.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026680
rosa_rugosa	Rorug05G0284900 Rorug05G0285000 Rorug05G0285100 Rorug05G0285200
rosa_samantha	Rh5AG354100 Rh5BG365900 Rh5CG390700 Rh5DG380800
rosa_wichuraiana	Rw0G002070 Rw5G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	407
AciI	CCGC	3 cut(s)	13, 336, 357
AclWI	GGATC	2 cut(s)	183, 196
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	2 cut(s)	23, 252
AluBI	AGCT	4 cut(s)	67, 219, 391, 413
AluI	AGCT	4 cut(s)	67, 219, 391, 413
Alw21I	GWGCWC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	183, 196
Ama87I	CYCGRG	1 cut(s)	120
Aor13HI	TCCGGA	1 cut(s)	407
ApeKI	GCWGC	1 cut(s)	413
AseI	ATTAAT	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	2 cut(s)	300, 320
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	25, 254
BfaI	CTAG	2 cut(s)	216, 354
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	3 cut(s)	337, 358, 414
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	3 cut(s)	338, 359, 415
Bme1390I	CCNGG	2 cut(s)	25, 254
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	92, 190
BmrFI	CCNGG	2 cut(s)	25, 254
BpiI	GAAGAC	2 cut(s)	300, 320
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse8I	GATNNNNATC	1 cut(s)	53
BseAI	TCCGGA	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	25, 254
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	154
BseJI	GATNNNNATC	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	162, 393
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	4 cut(s)	138, 170, 188, 247
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	3 cut(s)	13, 336, 357
BspCNI	CTCAG	1 cut(s)	405
BspEI	TCCGGA	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	92, 190
BspPI	GGATC	2 cut(s)	183, 196
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	4 cut(s)	138, 170, 188, 247
Bst2UI	CCWGG	2 cut(s)	25, 254
Bst4CI	ACNGT	4 cut(s)	100, 226, 276, 290
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	4 cut(s)	141, 173, 191, 250
BstMBI	GATC	4 cut(s)	138, 170, 188, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 342
BstNI	CCWGG	2 cut(s)	25, 254
BstSCI	CCNGG	2 cut(s)	23, 252
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	400
BstV2I	GAAGAC	2 cut(s)	300, 320
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	272, 295
Cac8I	GCNNGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	90
CsiI	ACCWGGT	1 cut(s)	23
CviAII	CATG	4 cut(s)	155, 163, 283, 310
CviJI	RGCY	9 cut(s)	67, 119, 178, 219, 339, 360, 391, 396, 413
CviKI_1	RGCY	9 cut(s)	67, 119, 178, 219, 339, 360, 391, 396, 413
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	4 cut(s)	140, 172, 190, 249
DpnII	GATC	4 cut(s)	138, 170, 188, 247
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	23, 252
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	4 cut(s)	158, 166, 286, 313
FaiI	YATR	6 cut(s)	75, 156, 164, 284, 311, 342
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	4 cut(s)	154, 162, 282, 309
Fnu4HI	GCNGC	3 cut(s)	337, 358, 414
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	337, 358, 414
FspBI	CTAG	2 cut(s)	216, 354
GluI	GCNGC	3 cut(s)	337, 358, 414
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	4 cut(s)	158, 166, 286, 313
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	2 cut(s)	31, 54
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	30, 213
Hpy188I	TCNGA	3 cut(s)	48, 148, 325
Hpy188III	TCNNGA	2 cut(s)	122, 408
Hpy8I	GTNNAC	2 cut(s)	30, 213
HpyCH4III	ACNGT	4 cut(s)	100, 226, 276, 290
HpyCH4V	TGCA	2 cut(s)	166, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 342
HpyF3I	CTNAG	1 cut(s)	392
Hsp92II	CATG	4 cut(s)	158, 166, 286, 313
Kpn2I	TCCGGA	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	138, 170, 188, 247
LmnI	GCTCC	2 cut(s)	15, 410
LpnPI	CCDG	7 cut(s)	10, 37, 159, 239, 266, 402, 421
Lsp1109I	GCAGC	1 cut(s)	400
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	2 cut(s)	216, 354
MalI	GATC	4 cut(s)	140, 172, 190, 249
MboI	GATC	4 cut(s)	138, 170, 188, 247
MboII	GAAGA	6 cut(s)	145, 148, 257, 260, 305, 325
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	162, 393
MluCI	AATT	2 cut(s)	202, 424
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	4 cut(s)	233, 319, 323, 407
MroI	TCCGGA	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	2 cut(s)	195, 201
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	25, 254
MvaI	CCWGG	2 cut(s)	25, 254
MwoI	GCNNNNNNNGC	2 cut(s)	10, 342
NdeII	GATC	4 cut(s)	138, 170, 188, 247
NlaIII	CATG	4 cut(s)	158, 166, 286, 313
NlaIV	GGNNCC	2 cut(s)	92, 190
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	338, 359, 415
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	90
PshBI	ATTAAT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	23, 252
PspGI	CCWGG	2 cut(s)	23, 252
PspN4I	GGNNCC	2 cut(s)	92, 190
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	195, 201
SatI	GCNGC	3 cut(s)	337, 358, 414
Sau3AI	GATC	4 cut(s)	138, 170, 188, 247
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	25, 254
SduI	GDGCHC	2 cut(s)	162, 393
SetI	ASST	7 cut(s)	29, 69, 92, 221, 334, 393, 415
SexAI	ACCWGGT	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	202, 424
SsiI	CCGC	3 cut(s)	13, 336, 357
SspMI	CTAG	2 cut(s)	216, 354
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	23, 252
TaaI	ACNGT	4 cut(s)	100, 226, 276, 290
TasI	AATT	2 cut(s)	202, 424
TauI	GCSGC	2 cut(s)	339, 360
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	195, 201
Tru9I	TTAA	2 cut(s)	195, 201
TscAI	CASTG	2 cut(s)	279, 295
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	143, 326
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	2 cut(s)	279, 295
VpaK11BI	GGWCC	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	216, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.