Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007284

Physical Location & Seq

Genomic Coordinates Forward (+)

32748269 .. 32748799

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0285200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTGTCATTAACAATTGTGGGAATAGGATCATGACACAGCTTCATGAGTATTCACTAAAGCAGCTTCAATTCCTTCTTCTTCTCTTCTTTCTGCTAACCCCTTCTGCAACCTCAATAACCTTCAATCTCTCGAGCTTTTCCGGTGCAGACTCTATAATAACCGAGCAAGATGCTACTATCGACAAGCGAGTCCTCCGACTCACCAATTTTGCTTTAGATGAATCACAGGTGGATAGCGTCGGCCGAGCTACCTACCAAGAACCCTTCCTCCTCCGCGAAATTGCCTCCGGAAGGCTCGTTGATTTTACTACACATTTCACCTTTGCCATCGATTCTCGAGGGGAACCCACCTACGGAGACGGGCTAGTGTTCTTCATAGCGCCACATGGTTCCTTACTCAAAAGAACCAAGGTGGCTCTCTCGGCCTCCCTGTCGAAAACCCGACAGATGGCCCGTCAAGAAATATTGGGTACAACTTTGTGGCGGTGGAGTTTGATACTTTGGCCAACCCCAAATCAAGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000724 GO:0000725 GO:0000731 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010225 GO:0012505 GO:0016740 GO:0016787 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019985 GO:0031967 GO:0031975 GO:0032182 GO:0032183 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061659 GO:0061665 GO:0070011 GO:0070647 GO:0071704 GO:0071897 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1990414 GO:1990466

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

176

Amino Acids

19.73

Weight (kDa)

7.92

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	40 - 134	1.6e-20	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55915 AT1G55915 AT1G55915 AT1G55915
fragaria_vesca	FvH4_3g29470 FvH4_3g29470 FvH4_3g29470
malus_domestica	MD11G1201700.v1.1
prunus_persica	Prupe.4G239900_v2.0.a1 Prupe.4G239900_v2.0.a1
pyrus_communis	pycom11g17420
rosa_chinensis	RchiOBHm_Chr5g0054021
rosa_laevigata	RLG00000034913
rosa_multiflora	Rmu_sc0023670.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026680
rosa_rugosa	Rorug05G0284900 Rorug05G0285000 Rorug05G0285100 Rorug05G0285200
rosa_samantha	Rh5AG354100 Rh5BG365900 Rh5CG390700 Rh5DG380800
rosa_wichuraiana	Rw0G002070 Rw5G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	2 cut(s)	277, 487
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	2 cut(s)	244, 506
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	4 cut(s)	294, 356, 451, 521
AgsI	TTSAA	2 cut(s)	71, 127
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	4 cut(s)	43, 67, 138, 251
AluI	AGCT	4 cut(s)	43, 67, 138, 251
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	38
Ama87I	CYCGRG	2 cut(s)	133, 339
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	4 cut(s)	244, 426, 453, 506
ApeKI	GCWGC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	196, 313
AvaI	CYCGRG	2 cut(s)	133, 339
BalI	TGGCCA	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	338, 445
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	368
BfoI	RGCGCY	1 cut(s)	386
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmeT110I	CYCGRG	2 cut(s)	133, 339
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	348, 394
BmsI	GCATC	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	2 cut(s)	143, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 356, 451, 521
BseAI	TCCGGA	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	294, 356, 451, 521
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	4 cut(s)	246, 428, 455, 508
BshVI	ATCGAT	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	247
BsiHKCI	CYCGRG	2 cut(s)	133, 339
BsiSI	CCGG	2 cut(s)	144, 291
BslI	CCNNNNNNNGG	4 cut(s)	294, 356, 451, 521
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsnI	GGCC	4 cut(s)	246, 428, 455, 508
BsoBI	CYCGRG	2 cut(s)	133, 339
Bsp13I	TCCGGA	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	30, 524
BspACI	CCGC	2 cut(s)	277, 487
BspANI	GGCC	4 cut(s)	246, 428, 455, 508
BspDI	ATCGAT	1 cut(s)	333
BspEI	TCCGGA	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	3 cut(s)	33, 46, 527
BspLI	GGNNCC	2 cut(s)	348, 394
BspPI	GGATC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	2 cut(s)	30, 524
BssT1I	CCWWGG	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	92
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	33, 527
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	30, 524
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	76
BstZI	CGGCCG	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	4 cut(s)	246, 428, 455, 508
BsuTUI	ATCGAT	1 cut(s)	333
CciI	TCATGA	3 cut(s)	33, 46, 527
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	454
ClaI	ATCGAT	1 cut(s)	333
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	4 cut(s)	34, 47, 389, 528
CviQI	GTAC	1 cut(s)	474
DpnI	GATC	2 cut(s)	32, 526
DpnII	GATC	2 cut(s)	30, 524
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	2 cut(s)	244, 506
EagI	CGGCCG	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EclXI	CGGCCG	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	411
Eco52I	CGGCCG	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	133, 339
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	4 cut(s)	37, 50, 392, 531
FaiI	YATR	6 cut(s)	35, 48, 158, 380, 390, 529
FatI	CATG	4 cut(s)	33, 46, 388, 527
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	4 cut(s)	246, 428, 455, 508
HapII	CCGG	2 cut(s)	144, 291
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	4 cut(s)	37, 50, 392, 531
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	5 cut(s)	152, 192, 201, 224, 335
HpaII	CCGG	2 cut(s)	144, 291
HphI	GGTGA	2 cut(s)	196, 313
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	7 cut(s)	34, 47, 133, 291, 339, 461, 528
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	5 cut(s)	86, 114, 133, 277, 288
HpyCH4V	TGCA	2 cut(s)	110, 149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
Hsp92II	CATG	4 cut(s)	37, 50, 392, 531
HspAI	GCGC	1 cut(s)	383
Kpn2I	TCCGGA	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	30, 524
LpnPI	CCDG	4 cut(s)	157, 215, 304, 446
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	368
MalI	GATC	2 cut(s)	32, 526
MboI	GATC	2 cut(s)	30, 524
MboII	GAAGA	4 cut(s)	71, 74, 79, 367
MfeI	CAATTG	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	4 cut(s)	16, 71, 208, 282
MluNI	TGGCCA	1 cut(s)	508
MlyI	GAGTC	3 cut(s)	146, 195, 201
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	7 cut(s)	124, 206, 281, 284, 298, 335, 439
Mox20I	TGGCCA	1 cut(s)	508
MroI	TCCGGA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	508
MspI	CCGG	2 cut(s)	144, 291
MunI	CAATTG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	2 cut(s)	30, 524
NlaIII	CATG	4 cut(s)	37, 50, 392, 531
NlaIV	GGNNCC	2 cut(s)	348, 394
NmeAIII	GCCGAG	2 cut(s)	272, 404
PaeR7I	CTCGAG	2 cut(s)	133, 339
PagI	TCATGA	3 cut(s)	33, 46, 527
PfeI	GAWTC	2 cut(s)	224, 335
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	3 cut(s)	146, 195, 200
PpsI	GAGTC	3 cut(s)	146, 195, 200
PspN4I	GGNNCC	2 cut(s)	348, 394
PspPI	GGNCC	1 cut(s)	454
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	30, 524
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	3 cut(s)	146, 195, 201
SfaNI	GCATC	1 cut(s)	163
Sfr274I	CTCGAG	2 cut(s)	133, 339
SlaI	CTCGAG	2 cut(s)	133, 339
SmlI	CTYRAG	2 cut(s)	133, 339
SmoI	CTYRAG	2 cut(s)	133, 339
Sse9I	AATT	4 cut(s)	16, 71, 208, 282
SsiI	CCGC	2 cut(s)	277, 487
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	411
TaqI	TCGA	5 cut(s)	134, 183, 333, 340, 437
TasI	AATT	4 cut(s)	16, 71, 208, 282
TfiI	GAWTC	2 cut(s)	224, 335
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	35, 237, 367
TspGWI	ACGGA	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	292
XhoI	CTCGAG	2 cut(s)	133, 339
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.