Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007284

Physical Location & Seq

Genomic Coordinates Forward (+)

58564032 .. 58569236

Gene Structure 5205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG354100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTTCACGAGCTTTGCCACAATGTTCACGGTCCTCATGATGCCAAATTCTACAAGCTATGGGATGAACTTAGGAAGGAATGCGAGGAGCTGATGACTAAGGGTGTAACTGGCACTGCAGAGGGGTTTGATCTTCCAGGGAGGCGTTTGGGTAGTGTTACACGTCAACCCCCTCTTTCATCTCTCCGCAAAACTGCACTTGCTGCTGCAGAAAAGAGAGCGGTTTTGGGATCTTTGATGCCATCTGGACCTAAGCGTCTTGGTGGTGATAGCTCTATGATGGCTGCACTTAGTCCGGTGCAAGCCTCTGCAATGGCTGCCGAGAGAAGATTGCAGGATGATATCTGGTGTGGTTCAGCATTTGCTGGAGCTTCTGAGGATGGAGAATGCAACTCTGGTACATCAGAGGACTGTGAAAACATAGGTGCAAGTGCAGGAAGTTCAAGGCTTCACAATGGTGCAAAAGTACAATCCTCAGATACATTACCACAAAAAAGAAGTCGCATACCTAATAAGAACACTTCTTCTCGATCATCCAAAGTCCATTTAGGATCCGAGTTTGTAGATCTATCCAACGACGACTCTGTATCTGGTTCTGACATGAGATCTCAGAAAAGAAGTCGTGAATCAGAAACCAGTTCATTCCCTCTATCCAATAGTCATCTAGAATCTAGTTTTGTGGATTTGTTGGGTATTTCAACCTCTGGGTCCGAACCTAATAATGATGGAACACATAATCTTGGAGAATCTGCTATGTGGCAGTGTGGAACATGCACTTTGTTTAATCCGCCATTAGCTCCAGTATGCGAGCTTTGTAGCACACAGAGACCAAAAGATGTTGGTACAAGTTACAAAATCTGGTCATGTAAATTCTGCACTTTGGAAAACAGTGTGAAGTTGGAGAAATGCTCAGCATGCGGACAGTGGAGATACTCGCATGGTCCACCAATTGCAACCCAACCACCAAATCTGGGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000724 GO:0000725 GO:0000731 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010225 GO:0012505 GO:0016740 GO:0016787 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019985 GO:0031967 GO:0031975 GO:0032182 GO:0032183 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061659 GO:0061665 GO:0070011 GO:0070647 GO:0071704 GO:0071897 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1990414 GO:1990466

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

326

Amino Acids

35.01

Weight (kDa)

6.51

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WLM	PF08325	1 - 112	5.4e-26	WLM domain
Zn_ribbon_RanBP	PF00641	252 - 277	2.3e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55915 AT1G55915 AT1G55915 AT1G55915
fragaria_vesca	FvH4_3g29470 FvH4_3g29470 FvH4_3g29470
malus_domestica	MD11G1201700.v1.1
prunus_persica	Prupe.4G239900_v2.0.a1 Prupe.4G239900_v2.0.a1
pyrus_communis	pycom11g17420
rosa_chinensis	RchiOBHm_Chr5g0054021
rosa_laevigata	RLG00000034913
rosa_multiflora	Rmu_sc0023670.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026680
rosa_rugosa	Rorug05G0284900 Rorug05G0285000 Rorug05G0285100 Rorug05G0285200
rosa_samantha	Rh5AG354100 Rh5BG365900 Rh5CG390700 Rh5DG380800
rosa_wichuraiana	Rw0G002070 Rw5G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	221
AciI	CCGC	4 cut(s)	187, 221, 788, 918
AclWI	GGATC	3 cut(s)	238, 546, 559
AcsI	RAATTY	2 cut(s)	47, 869
AfaI	GTAC	3 cut(s)	400, 468, 844
AfiI	CCNNNNNNNGG	1 cut(s)	971
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	444, 699
AjiI	CACGTC	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	456
AluBI	AGCT	7 cut(s)	13, 58, 91, 273, 371, 797, 811
AluI	AGCT	7 cut(s)	13, 58, 91, 273, 371, 797, 811
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	3 cut(s)	238, 546, 559
ApeKI	GCWGC	4 cut(s)	203, 206, 284, 317
ApoI	RAATTY	2 cut(s)	47, 869
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
AspS9I	GGNCC	4 cut(s)	32, 248, 708, 941
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	4 cut(s)	32, 248, 708, 941
BaeGI	GKGCMC	1 cut(s)	977
BamHI	GGATCC	1 cut(s)	551
BauI	CACGAG	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	190, 193, 271, 304
BccI	CCATC	4 cut(s)	250, 274, 374, 719
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	2 cut(s)	665, 672
BfmI	CTRYAG	2 cut(s)	117, 207
BglII	AGATCT	2 cut(s)	565, 605
BisI	GCNGC	4 cut(s)	204, 207, 285, 318
BlpI	GCTNAGC	1 cut(s)	910
BlsI	GCNGC	4 cut(s)	205, 208, 286, 319
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	4 cut(s)	32, 248, 708, 941
BmgBI	CACGTC	1 cut(s)	164
BmgT120I	GGNCC	4 cut(s)	32, 248, 708, 941
BmiI	GGNNCC	2 cut(s)	553, 709
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	31, 228
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	2 cut(s)	387, 783
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	910
BsaI	GGTCTC	1 cut(s)	820
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	971
Bse1I	ACTGG	3 cut(s)	115, 636, 800
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	4 cut(s)	70, 343, 385, 533
BseLI	CCNNNNNNNGG	1 cut(s)	971
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	4 cut(s)	366, 489, 623, 924
BseNI	ACTGG	3 cut(s)	115, 636, 800
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	977
BseXI	GCAGC	4 cut(s)	190, 193, 271, 304
BsgI	GTGCAG	4 cut(s)	180, 270, 453, 859
BsiSI	CCGG	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	971
BsmAI	GTCTC	1 cut(s)	820
BsmI	GAATGC	2 cut(s)	86, 392
Bso31I	GGTCTC	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	977
Bsp143I	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
Bsp1720I	GCTNAGC	1 cut(s)	910
BspACI	CCGC	4 cut(s)	187, 221, 788, 918
BspCNI	CTCAG	4 cut(s)	367, 488, 622, 923
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	553, 709
BspMAI	CTGCAG	2 cut(s)	121, 211
BspPI	GGATC	3 cut(s)	238, 546, 559
BspTNI	GGTCTC	1 cut(s)	820
BsrBI	CCGCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	115, 636, 800
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	4 cut(s)	32, 413, 890, 924
BstAPI	GCANNNNNTGC	2 cut(s)	203, 317
BstC8I	GCNNGC	3 cut(s)	303, 809, 916
BstDEI	CTNAG	8 cut(s)	71, 99, 252, 290, 375, 475, 609, 910
BstF5I	GGATG	4 cut(s)	70, 343, 385, 533
BstKTI	GATC	6 cut(s)	133, 233, 533, 554, 568, 608
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 203, 317, 915
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	774, 918
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	2 cut(s)	117, 207
BstSLI	GKGCMC	1 cut(s)	977
BstV1I	GCAGC	4 cut(s)	190, 193, 271, 304
BstX2I	RGATCY	4 cut(s)	230, 551, 565, 605
BstYI	RGATCY	4 cut(s)	230, 551, 565, 605
BtrI	CACGTC	1 cut(s)	164
BtsCI	GGATG	4 cut(s)	70, 343, 385, 533
BtsI	GCAGTG	2 cut(s)	114, 767
BtsIMutI	CAGTG	4 cut(s)	114, 767, 895, 929
Cac8I	GCNNGC	3 cut(s)	303, 809, 916
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	32, 248, 708, 941
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	3 cut(s)	399, 467, 843
CviAII	CATG	6 cut(s)	38, 601, 771, 864, 915, 938
CviQI	GTAC	3 cut(s)	399, 467, 843
DdeI	CTNAG	8 cut(s)	71, 99, 252, 290, 375, 475, 609, 910
DpnI	GATC	6 cut(s)	132, 232, 532, 553, 567, 607
DpnII	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
DrdI	GACNNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	777
Eco31I	GGTCTC	1 cut(s)	820
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	4 cut(s)	32, 248, 708, 941
EcoRII	CCWGG	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	343
FaeI	CATG	6 cut(s)	41, 604, 774, 867, 918, 941
FatI	CATG	6 cut(s)	37, 600, 770, 863, 914, 937
Fnu4HI	GCNGC	4 cut(s)	204, 207, 285, 318
FokI	GGATG	4 cut(s)	77, 350, 392, 520
Fsp4HI	GCNGC	4 cut(s)	204, 207, 285, 318
FspBI	CTAG	2 cut(s)	665, 672
GluI	GCNGC	4 cut(s)	204, 207, 285, 318
GsuI	CTGGAG	2 cut(s)	387, 783
HapII	CCGG	1 cut(s)	296
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	6 cut(s)	41, 604, 774, 867, 918, 941
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	4 cut(s)	581, 626, 668, 746
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	28, 167, 944
Hpy188I	TCNGA	8 cut(s)	376, 406, 478, 556, 598, 612, 631, 712
Hpy188III	TCNNGA	6 cut(s)	8, 38, 246, 528, 623, 665
Hpy8I	GTNNAC	3 cut(s)	28, 167, 944
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	4 cut(s)	32, 413, 890, 924
HpyCH4IV	ACGT	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 203, 317, 915
HpyF3I	CTNAG	8 cut(s)	71, 99, 252, 290, 375, 475, 609, 910
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	6 cut(s)	41, 604, 774, 867, 918, 941
Kzo9I	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
LmnI	GCTCC	3 cut(s)	88, 368, 802
Lsp1109I	GCAGC	4 cut(s)	190, 193, 271, 304
LweI	GCATC	2 cut(s)	31, 228
MaeI	CTAG	2 cut(s)	665, 672
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	3 cut(s)	106, 157, 848
MalI	GATC	6 cut(s)	132, 232, 532, 553, 567, 607
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
MboII	GAAGA	3 cut(s)	125, 339, 516
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	4 cut(s)	230, 551, 565, 605
MhlI	GDGCHC	1 cut(s)	977
MluCI	AATT	3 cut(s)	47, 869, 948
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	2 cut(s)	597, 879
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	2 cut(s)	86, 392
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	10, 203, 317, 915
NdeII	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
NlaIII	CATG	6 cut(s)	41, 604, 774, 867, 918, 941
NlaIV	GGNNCC	2 cut(s)	553, 709
NmeAIII	GCCGAG	1 cut(s)	346
NspI	RCATGY	2 cut(s)	774, 918
OliI	CACNNNNGTG	1 cut(s)	456
PaeI	GCATGC	1 cut(s)	918
PagI	TCATGA	1 cut(s)	37
PctI	GAATGC	2 cut(s)	86, 392
PfeI	GAWTC	3 cut(s)	626, 668, 746
PkrI	GCNGC	4 cut(s)	205, 208, 286, 319
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	553, 709
PspPI	GGNCC	4 cut(s)	32, 248, 708, 941
PstI	CTGCAG	2 cut(s)	121, 211
PsuI	RGATCY	4 cut(s)	230, 551, 565, 605
RsaI	GTAC	3 cut(s)	400, 468, 844
RsaNI	GTAC	3 cut(s)	399, 467, 843
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	4 cut(s)	204, 207, 285, 318
Sau3AI	GATC	6 cut(s)	130, 230, 530, 551, 565, 605
Sau96I	GGNCC	4 cut(s)	32, 248, 708, 941
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	977
SfaNI	GCATC	2 cut(s)	31, 228
SfcI	CTRYAG	2 cut(s)	117, 207
SinI	GGWCC	4 cut(s)	32, 248, 708, 941
SmiMI	CAYNNNNRTG	1 cut(s)	456
SphI	GCATGC	1 cut(s)	918
Sse9I	AATT	3 cut(s)	47, 869, 948
SsiI	CCGC	4 cut(s)	187, 221, 788, 918
SspMI	CTAG	2 cut(s)	665, 672
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	4 cut(s)	32, 413, 890, 924
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	529
TasI	AATT	3 cut(s)	47, 869, 948
TatI	WGTACW	1 cut(s)	466
TfiI	GAWTC	3 cut(s)	626, 668, 746
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	4 cut(s)	121, 767, 895, 929
TseI	GCWGC	4 cut(s)	203, 206, 284, 317
TspDTI	ATGAA	3 cut(s)	81, 168, 630
TspRI	CASTG	4 cut(s)	121, 767, 895, 929
VpaK11BI	GGWCC	4 cut(s)	32, 248, 708, 941
XapI	RAATTY	2 cut(s)	47, 869
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	2 cut(s)	774, 918
XspI	CTAG	2 cut(s)	665, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.