Rorug05G0285100

WLM domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
32742675 .. 32744012
1338 bp
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UTR
Exon/CDS
Intron
Rorug05G0285100.1

Sequence Viewer

Length: 1338 bp
ATGGAAATTTTGAGTTGGAATTGCAGAGGCATCTGCAATGCTACTACAACTAGGGCTTTGAAGGATTTGATCTCCCAAAATAGGCCTCAAGTGGTATTCCTTTGTGAAACAAAAATCAGTCGCGATTTGGAGTTTAAGTCGCTGAGTTCTGCACTAGGATTTGCGAATTCGGAAGCGGTCTTGAGTTATGGCCAATCTGGCGGGCTTGGGATGTTTTGGAACGATGATGTTCATATCCAACGAGGAACAAAGTCTGCACATCACATCGATTTGGTTATGTTGGGGAATCCAGACGAACCAAACTGGAAGTTAACAGGTTTTTATGGCTACTCCAGAACGGTGGATAGAGATAAGTCGTGGCAATTGTTACGTGATCTTGCTGATCTTGACTCACTTCCCTGGGTAGTGATTGGGGATTTCAACGAAATCCTAAACAATAGAGAGAAAATTGATGGATCGCTTCGCCCAGAGCATCAGATGAGGGGATTTCGAGAGGCACTAGGGTATGCAGACCTGCTGGACCTAGGGTTTCACGGCACCAAGTCTACCTGGTGGAATGCTGATACGAAACTCATGTTAGATAGGGCGGTTTGCTCTCCTTCTTGGTGCGATATTTTTGGTTATGCAAAACTAGTGCATCTTCCCCCCAGTGATTTGGATCATGTGCCCATATTACTGCATGCAAGCACCATTCCAATACCTCAGTGTACTCGAATCCATAGATTCAAATTTAAAGCCTTCTGGCTTCAACACAAAGACTGTGATCCGATTGTGAAGCAGGCTTGGCAGAGCGATGTTATGGGGGTTCCTTTGTTTAGAGTTGCCACAAAGATCAAACATACAAGAATTGCGCTTGATAAATGGCAGAAGGCAGAGTTTCGTGAGAGACAGCAGAGCATGCTAGGTATTCGGGCTAGACTAGAAGATCTAATGGAGACCAGGGCGTGCAATGAGGTACAGGAGGAGAAGAAGTTGCTGATGGAGCGCCTTCAGTGTCTTCTTTCACAGGAGGAATCTTTCTGGAAACAGAGAGCCAAAGTTACATGGCTCAGAGAAGGTGATAGGAATACTGGGTATTTCCACAGGAGAGCCTCAAATCGAAAACGTAAAAACCTCATCAAAGGTTTGTATGATGAGAATGGTGAGTGGAAGGAAGATGACGCAGGTTTGGAAACAGTCGTGACAGATTATTTCCAAAAGATGTTTACTGCATCGGCACTTGATGTGGAGGCTATGTCAACTACTCTTTCGGCCATTACTCCTTGTGTGACTCCGTCAATGAATGCCCAACTCTGCAGGCCGTATTCTGGTGAGGAGATAAAGTATGCTCTTTTTTAG

Protein Analysis

445

Amino Acids

51.26

Weight (kDa)

7.57

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 206 5.5e-16 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 522, 1154
AccB1I GGYRCC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 545
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 176, 201, 587
AclWI GGATC 3 cut(s) 463, 666, 758
AcoI YGGCCR 2 cut(s) 190, 1251
AcsI RAATTY 3 cut(s) 6, 166, 728
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 2 cut(s) 709, 957
AfiI CCNNNNNNNGG 2 cut(s) 81, 1307
AgsI TTSAA 4 cut(s) 61, 421, 727, 749
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 3 cut(s) 398, 548, 938
Alw26I GTCTC 2 cut(s) 880, 929
AlwI GGATC 3 cut(s) 463, 666, 758
AoxI GGCC 4 cut(s) 83, 190, 1251, 1298
ApoI RAATTY 3 cut(s) 6, 166, 728
AspA2I CCTAGG 1 cut(s) 523
AspLEI GCGC 2 cut(s) 853, 987
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 3 cut(s) 1070, 1154, 1322
AvaII GGWCC 1 cut(s) 520
AvrII CCTAGG 1 cut(s) 523
BaeGI GKGCMC 1 cut(s) 669
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 989
BccI CCATC 2 cut(s) 446, 973
BceAI ACGGC 2 cut(s) 550, 1285
BciT130I CCWGG 3 cut(s) 400, 550, 940
BcoDI GTCTC 2 cut(s) 880, 929
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 8 cut(s) 51, 155, 500, 524, 632, 902, 915, 920
BfmI CTRYAG 1 cut(s) 1294
BfoI RGCGCY 1 cut(s) 988
BfuAI ACCTGC 2 cut(s) 522, 1154
BglI GCCNNNNNGGC 1 cut(s) 198
BglII AGATCT 1 cut(s) 925
BlnI CCTAGG 1 cut(s) 523
Bme1390I CCNGG 3 cut(s) 400, 550, 940
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 538, 807
BmrFI CCNGG 3 cut(s) 400, 550, 940
BmrI ACTGGG 2 cut(s) 642, 1080
BmsI GCATC 4 cut(s) 39, 481, 646, 1220
BmuI ACTGGG 2 cut(s) 642, 1080
BpiI GAAGAC 1 cut(s) 989
BpmI CTGGAG 1 cut(s) 316
BpuEI CTTGAG 2 cut(s) 72, 202
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 4 cut(s) 398, 399, 523, 939
BsaXI ACNNNNNCTCC 8 cut(s) 122, 152, 956, 986, 1220, 1250, 1307, 1337
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 1307
Bse1I ACTGG 3 cut(s) 308, 648, 1075
Bse3DI GCAATG 2 cut(s) 43, 955
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 3 cut(s) 400, 550, 940
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 398, 399, 523, 939
BseGI GGATG 1 cut(s) 216
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 2 cut(s) 81, 1307
BseMI GCAATG 2 cut(s) 43, 955
BseMII CTCAG 3 cut(s) 134, 716, 1063
BseNI ACTGG 3 cut(s) 308, 648, 1075
BseRI GAGGAG 2 cut(s) 977, 1328
BseSI GKGCMC 1 cut(s) 669
BsgI GTGCAG 2 cut(s) 135, 240
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 4 cut(s) 85, 192, 1253, 1300
BshNI GGYRCC 1 cut(s) 536
BshVI ATCGAT 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 81, 1307
BsmAI GTCTC 2 cut(s) 880, 929
BsmI GAATGC 2 cut(s) 562, 1288
BsnI GGCC 4 cut(s) 85, 192, 1253, 1300
Bso31I GGTCTC 1 cut(s) 929
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 3 cut(s) 176, 201, 587
BspANI GGCC 4 cut(s) 85, 192, 1253, 1300
BspCNI CTCAG 3 cut(s) 135, 715, 1062
BspDI ATCGAT 1 cut(s) 267
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 538, 807
BspMAI CTGCAG 1 cut(s) 1298
BspMI ACCTGC 2 cut(s) 522, 1154
BspPI GGATC 3 cut(s) 463, 666, 758
BspT107I GGYRCC 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 929
BsrDI GCAATG 2 cut(s) 43, 955
BsrI ACTGG 3 cut(s) 308, 648, 1075
BssECI CCNNGG 4 cut(s) 398, 399, 523, 939
BssMI GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
BssT1I CCWWGG 1 cut(s) 523
Bst2UI CCWGG 3 cut(s) 400, 550, 940
Bst4CI ACNGT 3 cut(s) 340, 761, 1177
BstAPI GCANNNNNTGC 1 cut(s) 898
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 7 cut(s) 203, 681, 685, 780, 899, 946, 1298
BstDEI CTNAG 3 cut(s) 143, 702, 1049
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 988
BstHHI GCGC 2 cut(s) 853, 987
BstKTI GATC 8 cut(s) 72, 376, 385, 458, 661, 766, 834, 928
BstMAI GTCTC 2 cut(s) 880, 929
BstMBI GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
BstMWI GCNNNNNNNGC 4 cut(s) 198, 784, 898, 982
BstNI CCWGG 3 cut(s) 400, 550, 940
BstNSI RCATGY 2 cut(s) 683, 901
BstSCI CCNGG 3 cut(s) 398, 548, 938
BstSFI CTRYAG 1 cut(s) 1294
BstSLI GKGCMC 1 cut(s) 669
BstUI CGCG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 989
BstX2I RGATCY 1 cut(s) 925
BstXI CCANNNNNNTGG 2 cut(s) 340, 655
BstYI RGATCY 1 cut(s) 925
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 4 cut(s) 85, 192, 1253, 1300
BsuTUI ATCGAT 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 807
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 655, 710, 998
BtuMI TCGCGA 1 cut(s) 123
BveI ACCTGC 2 cut(s) 522, 1154
Cac8I GCNNGC 7 cut(s) 203, 681, 685, 780, 899, 946, 1298
CfoI GCGC 2 cut(s) 853, 987
Cfr13I GGNCC 1 cut(s) 520
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 1169
CsiI ACCWGGT 1 cut(s) 548
Csp6I GTAC 2 cut(s) 708, 956
CviAII CATG 5 cut(s) 574, 662, 680, 898, 1044
CviQI GTAC 2 cut(s) 708, 956
DdeI CTNAG 3 cut(s) 143, 702, 1049
DpnI GATC 8 cut(s) 71, 375, 384, 457, 660, 765, 833, 927
DpnII GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
DraI TTTAAA 1 cut(s) 733
EaeI YGGCCR 2 cut(s) 190, 1251
Eco130I CCWWGG 1 cut(s) 523
Eco147I AGGCCT 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 929
Eco47I GGWCC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 974
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 3 cut(s) 398, 548, 938
EcoT14I CCWWGG 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 5 cut(s) 577, 665, 683, 901, 1047
FatI CATG 5 cut(s) 573, 661, 679, 897, 1043
FauI CCCGC 1 cut(s) 194
FblI GTMKAC 1 cut(s) 545
FokI GGATG 1 cut(s) 223
FspBI CTAG 8 cut(s) 51, 155, 500, 524, 632, 902, 915, 920
GlaI GCGC 2 cut(s) 852, 986
GsuI CTGGAG 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 988
HaeIII GGCC 4 cut(s) 85, 192, 1253, 1300
HgaI GACGC 1 cut(s) 1169
HhaI GCGC 2 cut(s) 853, 987
Hin1II CATG 5 cut(s) 577, 665, 683, 901, 1047
Hin6I GCGC 2 cut(s) 851, 985
HinP1I GCGC 2 cut(s) 851, 985
HincII GTYRAC 2 cut(s) 312, 1239
HindII GTYRAC 2 cut(s) 312, 1239
HinfI GANTC 6 cut(s) 286, 389, 714, 723, 1013, 1270
HpaI GTTAAC 1 cut(s) 312
HphI GGTGA 3 cut(s) 1070, 1154, 1322
Hpy166II GTNNAC 5 cut(s) 312, 546, 708, 1206, 1239
Hpy188I TCNGA 4 cut(s) 172, 477, 768, 1052
Hpy188III TCNNGA 9 cut(s) 122, 181, 290, 333, 386, 491, 881, 1021, 1180
Hpy8I GTNNAC 5 cut(s) 312, 546, 708, 1206, 1239
HpyAV CCTTC 7 cut(s) 55, 609, 748, 862, 998, 1049, 1144
HpyCH4III ACNGT 3 cut(s) 340, 761, 1177
HpyCH4IV ACGT 2 cut(s) 370, 1105
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 784, 898, 982
HpyF3I CTNAG 3 cut(s) 143, 702, 1049
HpySE526I ACGT 2 cut(s) 370, 1105
Hsp92II CATG 5 cut(s) 577, 665, 683, 901, 1047
HspAI GCGC 2 cut(s) 851, 985
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
LmnI GCTCC 1 cut(s) 982
LweI GCATC 4 cut(s) 39, 481, 646, 1220
MabI ACCWGGT 1 cut(s) 548
MaeI CTAG 8 cut(s) 51, 155, 500, 524, 632, 902, 915, 920
MaeII ACGT 2 cut(s) 370, 1105
MaeIII GTNAC 4 cut(s) 366, 1039, 1180, 1267
MalI GATC 8 cut(s) 71, 375, 384, 457, 660, 765, 833, 927
MboI GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
MboII GAAGA 5 cut(s) 632, 935, 979, 989, 1166
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 1 cut(s) 669
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 7 cut(s) 6, 19, 166, 362, 447, 728, 846
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 2 cut(s) 383, 1264
MmeI TCCRAC 1 cut(s) 262
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 3 cut(s) 135, 311, 732
Msp20I TGGCCA 1 cut(s) 192
MspR9I CCNGG 3 cut(s) 400, 550, 940
MunI CAATTG 1 cut(s) 362
Mva1269I GAATGC 2 cut(s) 562, 1288
MvaI CCWGG 3 cut(s) 400, 550, 940
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 198, 784, 898, 982
NdeII GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
NlaIII CATG 5 cut(s) 577, 665, 683, 901, 1047
NlaIV GGNNCC 2 cut(s) 538, 807
NmuCI GTSAC 2 cut(s) 1180, 1267
NruI TCGCGA 1 cut(s) 123
NspI RCATGY 2 cut(s) 683, 901
PaeI GCATGC 2 cut(s) 683, 901
PasI CCCWGGG 1 cut(s) 399
PceI AGGCCT 1 cut(s) 85
PctI GAATGC 2 cut(s) 562, 1288
PfeI GAWTC 4 cut(s) 286, 714, 723, 1013
PflFI GACNNNGTC 1 cut(s) 1273
PleI GAGTC 2 cut(s) 383, 1264
PpsI GAGTC 2 cut(s) 383, 1264
Ppu21I YACGTR 1 cut(s) 371
Psp6I CCWGG 3 cut(s) 398, 548, 938
PspGI CCWGG 3 cut(s) 398, 548, 938
PspN4I GGNNCC 2 cut(s) 538, 807
PspPI GGNCC 1 cut(s) 520
PstI CTGCAG 1 cut(s) 1298
PsuI RGATCY 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 1273
RruI TCGCGA 1 cut(s) 123
RsaI GTAC 2 cut(s) 709, 957
RsaNI GTAC 2 cut(s) 708, 956
SaqAI TTAA 3 cut(s) 135, 311, 732
Sau3AI GATC 8 cut(s) 69, 373, 382, 455, 658, 763, 831, 925
Sau96I GGNCC 1 cut(s) 520
SchI GAGTC 2 cut(s) 383, 1264
ScrFI CCNGG 3 cut(s) 400, 550, 940
SduI GDGCHC 1 cut(s) 669
SexAI ACCWGGT 1 cut(s) 548
SfaNI GCATC 4 cut(s) 39, 481, 646, 1220
SfcI CTRYAG 1 cut(s) 1294
SinI GGWCC 1 cut(s) 520
SmlI CTYRAG 2 cut(s) 87, 181
SmoI CTYRAG 2 cut(s) 87, 181
SpeI ACTAGT 1 cut(s) 631
SphI GCATGC 2 cut(s) 683, 901
Sse9I AATT 7 cut(s) 6, 19, 166, 362, 447, 728, 846
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 3 cut(s) 176, 201, 587
SspMI CTAG 8 cut(s) 51, 155, 500, 524, 632, 902, 915, 920
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 3 cut(s) 398, 548, 938
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 3 cut(s) 340, 761, 1177
TaiI ACGT 2 cut(s) 373, 1108
TaqI TCGA 4 cut(s) 267, 490, 712, 1099
TasI AATT 7 cut(s) 6, 19, 166, 362, 447, 728, 846
TatI WGTACW 1 cut(s) 707
TfiI GAWTC 4 cut(s) 286, 714, 723, 1013
Tru1I TTAA 3 cut(s) 135, 311, 732
Tru9I TTAA 3 cut(s) 135, 311, 732
TscAI CASTG 3 cut(s) 655, 710, 998
TseFI GTSAC 2 cut(s) 1180, 1267
Tsp45I GTSAC 2 cut(s) 1180, 1267
TspDTI ATGAA 2 cut(s) 221, 1295
TspGWI ACGGA 1 cut(s) 1263
TspRI CASTG 3 cut(s) 655, 710, 998
Tth111I GACNNNGTC 1 cut(s) 1273
VpaK11BI GGWCC 1 cut(s) 520
XapI RAATTY 3 cut(s) 6, 166, 728
XceI RCATGY 2 cut(s) 683, 901
XmaJI CCTAGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 545
XspI CTAG 8 cut(s) 51, 155, 500, 524, 632, 902, 915, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.