Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007284

Physical Location & Seq

Genomic Coordinates Forward (+)

32728323 .. 32728931

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAACCACAAACCCAGCAACCAAGGAGACCACAAACCCAACAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTACCAGGTGGACTCCCACTCCAGATCAGATAAGAATCCTCAATGAGCTTTTCTACAGCAAGGGAGTTAGGTCCCCAACCGCAAAGCAGGTTCAGTGGATCTGTTTCCAGTTGAGACGGTACGGAAAGATCGAGGTTAAGAATGTCTTTTATTGGTTCCAGAACCACAAGGCTCGGGATAAACAGAAGAAGAAGAAGATCACTTCGGATGTTCCTATGCTCATGCAAAGATCAGGGCTTGTTGGTAATGGTACCAATTGGAAACCTGAGGATAAGTATCTTAACTTCGGATCTTCTGCATCTGCTTGTGCTTCTTCAGCTGGATTTGGTGGATCCATAAAGGAGATTGAAACCCTTCCACTGTTCCCCATGCATAGTGAAGACATCTTAGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGATTACTTCGGTGGTTGGGGCGGCTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCATCCGGATCTGTTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000724 GO:0000725 GO:0000731 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010225 GO:0012505 GO:0016740 GO:0016787 GO:0016925 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0019787 GO:0019789 GO:0019985 GO:0031967 GO:0031975 GO:0032182 GO:0032183 GO:0032446 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061659 GO:0061665 GO:0070011 GO:0070647 GO:0071704 GO:0071897 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1990414 GO:1990466

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

202

Amino Acids

22.21

Weight (kDa)

9.41

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	6.4e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55915 AT1G55915 AT1G55915 AT1G55915
fragaria_vesca	FvH4_3g29470 FvH4_3g29470 FvH4_3g29470
malus_domestica	MD11G1201700.v1.1
prunus_persica	Prupe.4G239900_v2.0.a1 Prupe.4G239900_v2.0.a1
pyrus_communis	pycom11g17420
rosa_chinensis	RchiOBHm_Chr5g0054021
rosa_laevigata	RLG00000034913
rosa_multiflora	Rmu_sc0023670.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026680
rosa_rugosa	Rorug05G0284900 Rorug05G0285000 Rorug05G0285100 Rorug05G0285200
rosa_samantha	Rh5AG354100 Rh5BG365900 Rh5CG390700 Rh5DG380800
rosa_wichuraiana	Rw0G002070 Rw5G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	587
AciI	CCGC	4 cut(s)	165, 507, 537, 546
AclWI	GGATC	5 cut(s)	191, 382, 411, 424, 598
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	88, 206, 337
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	3 cut(s)	133, 404, 571
AluI	AGCT	3 cut(s)	133, 404, 571
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	22, 193
AlwI	GGATC	5 cut(s)	191, 382, 411, 424, 598
Ama87I	CYCGRG	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	587
ApeKI	GCWGC	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	156
AxyI	CCTNAGG	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	573
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BbsI	GAAGAC	2 cut(s)	471, 491
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	22, 193
BfmI	CTRYAG	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	75, 538
BlpI	GCTNAGC	1 cut(s)	572
BlsI	GCNGC	2 cut(s)	76, 539
Bme1390I	CCNGG	2 cut(s)	79, 91
Bme18I	GGWCC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	5 cut(s)	6, 158, 242, 337, 418
BmrFI	CCNGG	2 cut(s)	79, 91
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	2 cut(s)	471, 491
BpmI	CTGGAG	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	79
BsaBI	GATNNNNATC	2 cut(s)	119, 360
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	23, 51, 495
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	351
Bse8I	GATNNNNATC	2 cut(s)	119, 360
BseAI	TCCGGA	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	23, 51, 495
BseGI	GGATG	3 cut(s)	61, 298, 584
BseJI	GATNNNNATC	2 cut(s)	119, 360
BseMII	CTCAG	2 cut(s)	342, 586
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	78, 588
BslFI	GGGAC	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	22, 193
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp13I	TCCGGA	1 cut(s)	587
Bsp143I	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
Bsp1720I	GCTNAGC	1 cut(s)	572
BspACI	CCGC	4 cut(s)	165, 507, 537, 546
BspCNI	CTCAG	2 cut(s)	343, 585
BspEI	TCCGGA	1 cut(s)	587
BspLI	GGNNCC	5 cut(s)	6, 158, 242, 337, 418
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	5 cut(s)	191, 382, 411, 424, 598
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	23, 51, 495
BssMI	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	204, 447
BstDEI	CTNAG	4 cut(s)	351, 472, 572, 606
BstF5I	GGATG	3 cut(s)	61, 298, 584
BstKTI	GATC	8 cut(s)	112, 186, 216, 285, 317, 377, 419, 593
BstMAI	GTCTC	2 cut(s)	22, 193
BstMBI	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 513, 543
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	77, 89
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	471, 491
BstX2I	RGATCY	4 cut(s)	183, 374, 416, 590
BstYI	RGATCY	4 cut(s)	183, 374, 416, 590
Bsu36I	CCTNAGG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	61, 298, 584
BtsIMutI	CAGTG	2 cut(s)	185, 443
BveI	ACCTGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	87, 205, 336
CviAII	CATG	3 cut(s)	307, 454, 481
CviQI	GTAC	3 cut(s)	87, 205, 336
DdeI	CTNAG	4 cut(s)	351, 472, 572, 606
DpnI	GATC	8 cut(s)	111, 185, 215, 284, 316, 376, 418, 592
DpnII	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
Ecl136II	GAGCTC	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	310, 457, 484
FaiI	YATR	8 cut(s)	302, 308, 422, 455, 459, 482, 513, 543
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	306, 453, 480
Fnu4HI	GCNGC	2 cut(s)	75, 538
FokI	GGATG	3 cut(s)	68, 305, 571
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	2 cut(s)	75, 538
GluI	GCNGC	2 cut(s)	75, 538
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	90
HapII	CCGG	2 cut(s)	78, 588
Hin1II	CATG	3 cut(s)	310, 457, 484
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	97, 120
HpaII	CCGG	2 cut(s)	78, 588
Hpy166II	GTNNAC	2 cut(s)	96, 598
Hpy188I	TCNGA	4 cut(s)	114, 292, 374, 496
Hpy188III	TCNNGA	4 cut(s)	107, 244, 260, 588
Hpy8I	GTNNAC	2 cut(s)	96, 598
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	2 cut(s)	204, 447
HpyCH4V	TGCA	3 cut(s)	310, 383, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 513, 543
HpyF3I	CTNAG	4 cut(s)	351, 472, 572, 606
Hsp92II	CATG	3 cut(s)	310, 457, 484
Kpn2I	TCCGGA	1 cut(s)	587
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	392
MabI	ACCWGGT	1 cut(s)	89
MalI	GATC	8 cut(s)	111, 185, 215, 284, 316, 376, 418, 592
MboI	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
MboII	GAAGA	8 cut(s)	283, 286, 289, 292, 369, 390, 476, 496
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	4 cut(s)	183, 374, 416, 590
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	8 cut(s)	46, 53, 134, 211, 346, 490, 494, 587
Mph1103I	ATGCAT	1 cut(s)	459
MroI	TCCGGA	1 cut(s)	587
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	2 cut(s)	222, 366
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	78, 588
MspR9I	CCNGG	2 cut(s)	79, 91
MunI	CAATTG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	401, 513, 543
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
NlaIII	CATG	3 cut(s)	310, 457, 484
NlaIV	GGNNCC	5 cut(s)	6, 158, 242, 337, 418
NsiI	ATGCAT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	76, 539
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	5 cut(s)	6, 158, 242, 337, 418
PspPI	GGNCC	1 cut(s)	156
PspPPI	RGGWCCY	1 cut(s)	156
PsuI	RGATCY	4 cut(s)	183, 374, 416, 590
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	3 cut(s)	88, 206, 337
RsaNI	GTAC	3 cut(s)	87, 205, 336
SacI	GAGCTC	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	222, 366
SatI	GCNGC	2 cut(s)	75, 538
Sau3AI	GATC	8 cut(s)	109, 183, 213, 282, 314, 374, 416, 590
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	79, 91
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	9 cut(s)	95, 135, 158, 177, 222, 352, 406, 505, 573
SexAI	ACCWGGT	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	165, 507, 537, 546
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	77, 89
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	204, 447
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	222, 366
Tru9I	TTAA	2 cut(s)	222, 366
TscAI	CASTG	2 cut(s)	185, 450
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	185, 450
VpaK11BI	GGWCC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.