RLG00000034913

WLM domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
56924504 .. 56928172
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034913

Sequence Viewer

Length: 1257 bp
ATGAATTCGGGCGACTTGAACAAGGTGTGGGAAATCAGAGCACTGAAAAGAAAGGATCGGCAAGAGGAAGCCAGCAAGATGCTAGACAAAATCGCCAAACAGGTCCAGCCCATTATGCGCAAACACAAATGGCGTGTCAAGCTTCTCTCTGAGATGTGCCCAACCAATCCTTCTCTTCTCGGGTTGAATGTGAACCGCGGTGTGCATGTGAAGCTGAGGCTGCGTAGGCCGAATAGGGATTTTGATTTCTATCCCTTTGATCAAGTTCTTGATACAATGCTTCACGAGCTTTGCCACAATGTTCACGGTCCTCACGATGCCAAATTCTACAAGCTATGGGATGAACTTAGGAAGGAATGCGAGGAGCTGATGACTAAGGGTGTAACTGGCACTGCAGAGGGGTTTGATCTTCCAGGGAGGCGTTTGGGAAGTGTTACACGTCAACCCCCTCTTTCATCTCTCCGCAAAACTGCACTTGCTGCTGCAGAAAAGAGAGCGGTTTTGGGATCTTTGATGCCATCTGGACCTAAGCGTCTTGGTGGTGATAGCTCTATGATGGCTGCACTTAGTCCAGTGCAAGCTGCTGCAATGGCTGCCGAGAGAAGATTGCAGGATGATATCTGGTGTGGTTCAGCATTTGCTGGAGCTTCTGAAGATGGAGAATGCAACTCTGGTACATCAGAGGACTGTGAAAACATAGGTGCAAGTGCAGGAATTTCAAGGCTTCACAATGGTGCAAAAGTACAATCCCCAGATACATTACCACAAAAAAGAAGTCGCATACCTAATAAGAACACTTCTTCTCGATCATCTGAAGTCCATTTAGGATCCGAGTTTGTGGATCTATCCAATGACGACTCTGTGTCTGGTTCTGACATGAGATCTCAGAAAAGAAGTCGTGGATCAGAAACCAGTTCATTCCCTCAATCCAATCGTCATCTAGCATCTAGTTTTGTGGATTTGTTGGGTATTTCAACCTCTGGGTCCGAACCTAATAATGATGGAACACATAATCTTGAAGAATCTGCTATGTGGCACTGTGGAACATGCACTTTGTTAAATCCACCATTAGCTCCAGTATGCGAGCTTTGTAGCACACAGAGACCAAAAGATGTTGGTACAAGTTACAAAATCTGGTCATGTAAATTCTGCACTTTGGAAAACAGTATGAAGTTGGAGAAATGCTCAGCATGCGGACAGTGGAGATACTCGCATGGTCCACCAATTGCAACCCAACCACCAAATCTGGGCACTTGA

Protein Analysis

419

Amino Acids

46.01

Weight (kDa)

8.69

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WLM PF08325 8 - 204 3.1e-66 WLM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 531
Acc16I TGCGCA 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 497
AccII CGCG 1 cut(s) 198
AciI CCGC 5 cut(s) 196, 198, 463, 497, 1194
AclWI GGATC 6 cut(s) 63, 514, 822, 835, 849, 910
AcsI RAATTY 4 cut(s) 4, 323, 714, 1145
AcuI CTGAAG 2 cut(s) 672, 834
AfaI GTAC 3 cut(s) 676, 744, 1120
AfiI CCNNNNNNNGG 1 cut(s) 1247
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 5 cut(s) 19, 187, 720, 975, 1019
AhdI GACNNNNNGTC 1 cut(s) 862
AjiI CACGTC 1 cut(s) 440
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AleI CACNNNNGTG 1 cut(s) 732
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 1096
AlwI GGATC 6 cut(s) 63, 514, 822, 835, 849, 910
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 7 cut(s) 220, 479, 482, 560, 581, 584, 593
ApoI RAATTY 4 cut(s) 4, 323, 714, 1145
ArsI GACNNNNNNTTYG 4 cut(s) 120, 152, 760, 792
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 5 cut(s) 103, 308, 524, 984, 1217
AsuHPI GGTGA 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 5 cut(s) 103, 308, 524, 984, 1217
BaeGI GKGCMC 2 cut(s) 161, 1253
BamHI GGATCC 1 cut(s) 827
BauI CACGAG 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 7 cut(s) 207, 466, 469, 547, 568, 571, 580
BccI CCATC 4 cut(s) 526, 550, 650, 995
BciT130I CCWGG 1 cut(s) 414
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 1096
BfaI CTAG 3 cut(s) 83, 941, 948
BfmI CTRYAG 2 cut(s) 393, 483
BglII AGATCT 1 cut(s) 881
BisI GCNGC 7 cut(s) 221, 480, 483, 561, 582, 585, 594
BlpI GCTNAGC 1 cut(s) 1186
BlsI GCNGC 7 cut(s) 222, 481, 484, 562, 583, 586, 595
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 5 cut(s) 103, 308, 524, 984, 1217
BmeRI GACNNNNNGTC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 440
BmgT120I GGNCC 5 cut(s) 103, 308, 524, 984, 1217
BmiI GGNNCC 2 cut(s) 829, 985
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 4 cut(s) 69, 307, 504, 953
BplI GAGNNNNNCTC 2 cut(s) 1169, 1201
BpmI CTGGAG 2 cut(s) 663, 1059
Bpu10I CCTNAGC 2 cut(s) 215, 528
Bpu1102I GCTNAGC 1 cut(s) 1186
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 1096
BsaJI CCNNGG 2 cut(s) 196, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 1247
Bse1I ACTGG 4 cut(s) 391, 572, 912, 1076
Bse3DI GCAATG 1 cut(s) 594
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 196, 413
BseGI GGATG 2 cut(s) 346, 619
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 1247
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 4 cut(s) 141, 206, 899, 1200
BseNI ACTGG 4 cut(s) 391, 572, 912, 1076
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 161, 1253
BseXI GCAGC 7 cut(s) 207, 466, 469, 547, 568, 571, 580
BsgI GTGCAG 4 cut(s) 456, 546, 729, 1135
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 1247
BsmAI GTCTC 1 cut(s) 1096
BsmI GAATGC 2 cut(s) 362, 668
BsnI GGCC 1 cut(s) 229
Bso31I GGTCTC 1 cut(s) 1096
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 43, 161, 1253
Bsp143I GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
Bsp1720I GCTNAGC 1 cut(s) 1186
BspACI CCGC 5 cut(s) 196, 198, 463, 497, 1194
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 4 cut(s) 142, 207, 898, 1199
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 829, 985
BspMAI CTGCAG 2 cut(s) 397, 487
BspPI GGATC 6 cut(s) 63, 514, 822, 835, 849, 910
BspTNI GGTCTC 1 cut(s) 1096
BsrBI CCGCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 4 cut(s) 391, 572, 912, 1076
BssECI CCNNGG 2 cut(s) 196, 413
BssMI GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
BssSI CACGAG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 5 cut(s) 308, 689, 1040, 1166, 1200
Bst6I CTCTTC 1 cut(s) 180
BstAPI GCANNNNNTGC 2 cut(s) 479, 593
BstC8I GCNNGC 4 cut(s) 73, 579, 1085, 1192
BstDEI CTNAG 8 cut(s) 150, 215, 347, 375, 528, 566, 885, 1186
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 2 cut(s) 346, 619
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 9 cut(s) 58, 262, 409, 509, 809, 830, 844, 884, 905
BstMAI GTCTC 1 cut(s) 1096
BstMBI GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 3 cut(s) 209, 1050, 1194
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 2 cut(s) 393, 483
BstSLI GKGCMC 2 cut(s) 161, 1253
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 7 cut(s) 207, 466, 469, 547, 568, 571, 580
BstX2I RGATCY 4 cut(s) 506, 827, 841, 881
BstYI RGATCY 4 cut(s) 506, 827, 841, 881
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 440
BtsCI GGATG 2 cut(s) 346, 619
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 5 cut(s) 41, 390, 579, 1036, 1205
Cac8I GCNNGC 4 cut(s) 73, 579, 1085, 1192
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 5 cut(s) 103, 308, 524, 984, 1217
Cfr42I CCGCGG 1 cut(s) 199
CseI GACGC 1 cut(s) 521
Csp6I GTAC 3 cut(s) 675, 743, 1119
CviAII CATG 6 cut(s) 206, 877, 1047, 1140, 1191, 1214
CviQI GTAC 3 cut(s) 675, 743, 1119
DdeI CTNAG 8 cut(s) 150, 215, 347, 375, 528, 566, 885, 1186
DpnI GATC 9 cut(s) 57, 261, 408, 508, 808, 829, 843, 883, 904
DpnII GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
DrdI GACNNNNNNGTC 1 cut(s) 531
DriI GACNNNNNGTC 1 cut(s) 862
DseDI GACNNNNNNGTC 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 862
EarI CTCTTC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 1096
Eco32I GATATC 1 cut(s) 619
Eco47I GGWCC 5 cut(s) 103, 308, 524, 984, 1217
Eco57I CTGAAG 2 cut(s) 672, 834
Eco88I CYCGRG 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 412
EcoRV GATATC 1 cut(s) 619
FaeI CATG 6 cut(s) 209, 880, 1050, 1143, 1194, 1217
FatI CATG 6 cut(s) 205, 876, 1046, 1139, 1190, 1213
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 7 cut(s) 221, 480, 483, 561, 582, 585, 594
FokI GGATG 2 cut(s) 353, 626
Fsp4HI GCNGC 7 cut(s) 221, 480, 483, 561, 582, 585, 594
FspBI CTAG 3 cut(s) 83, 941, 948
FspI TGCGCA 1 cut(s) 119
GlaI GCGC 1 cut(s) 119
GluI GCNGC 7 cut(s) 221, 480, 483, 561, 582, 585, 594
GsuI CTGGAG 2 cut(s) 663, 1059
HaeIII GGCC 1 cut(s) 229
HgaI GACGC 1 cut(s) 521
HhaI GCGC 1 cut(s) 120
Hin1II CATG 6 cut(s) 209, 880, 1050, 1143, 1194, 1217
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 857, 1022
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 4 cut(s) 193, 304, 443, 1220
Hpy188III TCNNGA 6 cut(s) 269, 284, 314, 522, 804, 1016
Hpy8I GTNNAC 4 cut(s) 193, 304, 443, 1220
HpyAV CCTTC 2 cut(s) 180, 346
HpyCH4III ACNGT 5 cut(s) 308, 689, 1040, 1166, 1200
HpyCH4IV ACGT 1 cut(s) 439
HpyF3I CTNAG 8 cut(s) 150, 215, 347, 375, 528, 566, 885, 1186
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 6 cut(s) 209, 880, 1050, 1143, 1194, 1217
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 259
KspI CCGCGG 1 cut(s) 199
Kzo9I GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
LmnI GCTCC 3 cut(s) 364, 644, 1078
Lsp1109I GCAGC 7 cut(s) 207, 466, 469, 547, 568, 571, 580
LweI GCATC 4 cut(s) 69, 307, 504, 953
MaeI CTAG 3 cut(s) 83, 941, 948
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 3 cut(s) 382, 433, 1124
MalI GATC 9 cut(s) 57, 261, 408, 508, 808, 829, 843, 883, 904
MbiI CCGCTC 1 cut(s) 497
MboI GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
MboII GAAGA 6 cut(s) 167, 401, 615, 665, 792, 1031
MfeI CAATTG 1 cut(s) 1224
MflI RGATCY 4 cut(s) 506, 827, 841, 881
MhlI GDGCHC 3 cut(s) 43, 161, 1253
MluCI AATT 5 cut(s) 4, 323, 714, 1145, 1224
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 1155
MseI TTAA 1 cut(s) 1058
MslI CAYNNNNRTG 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 1224
Mva1269I GAATGC 2 cut(s) 362, 668
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 1 cut(s) 198
NdeII GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
NlaIII CATG 6 cut(s) 209, 880, 1050, 1143, 1194, 1217
NlaIV GGNNCC 2 cut(s) 829, 985
NmeAIII GCCGAG 1 cut(s) 622
NsbI TGCGCA 1 cut(s) 119
NspI RCATGY 3 cut(s) 209, 1050, 1194
OliI CACNNNNGTG 1 cut(s) 732
PaeI GCATGC 1 cut(s) 1194
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 2 cut(s) 362, 668
PfeI GAWTC 1 cut(s) 1022
PkrI GCNGC 7 cut(s) 222, 481, 484, 562, 583, 586, 595
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 829, 985
PspPI GGNCC 5 cut(s) 103, 308, 524, 984, 1217
PstI CTGCAG 2 cut(s) 397, 487
PsuI RGATCY 4 cut(s) 506, 827, 841, 881
RsaI GTAC 3 cut(s) 676, 744, 1120
RsaNI GTAC 3 cut(s) 675, 743, 1119
RseI CAYNNNNRTG 1 cut(s) 732
SacII CCGCGG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 1058
SatI GCNGC 7 cut(s) 221, 480, 483, 561, 582, 585, 594
Sau3AI GATC 9 cut(s) 55, 259, 406, 506, 806, 827, 841, 881, 902
Sau96I GGNCC 5 cut(s) 103, 308, 524, 984, 1217
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 3 cut(s) 43, 161, 1253
SfaNI GCATC 4 cut(s) 69, 307, 504, 953
SfcI CTRYAG 2 cut(s) 393, 483
Sfr303I CCGCGG 1 cut(s) 199
SgrBI CCGCGG 1 cut(s) 199
SinI GGWCC 5 cut(s) 103, 308, 524, 984, 1217
SmiMI CAYNNNNRTG 1 cut(s) 732
SphI GCATGC 1 cut(s) 1194
Sse9I AATT 5 cut(s) 4, 323, 714, 1145, 1224
SsiI CCGC 5 cut(s) 196, 198, 463, 497, 1194
SspMI CTAG 3 cut(s) 83, 941, 948
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 5 cut(s) 308, 689, 1040, 1166, 1200
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 805
TasI AATT 5 cut(s) 4, 323, 714, 1145, 1224
TatI WGTACW 1 cut(s) 742
TfiI GAWTC 1 cut(s) 1022
Tru1I TTAA 1 cut(s) 1058
Tru9I TTAA 1 cut(s) 1058
TscAI CASTG 5 cut(s) 48, 397, 579, 1043, 1205
TseI GCWGC 7 cut(s) 220, 479, 482, 560, 581, 584, 593
TspDTI ATGAA 5 cut(s) 17, 357, 444, 906, 1184
TspRI CASTG 5 cut(s) 48, 397, 579, 1043, 1205
VpaK11BI GGWCC 5 cut(s) 103, 308, 524, 984, 1217
XapI RAATTY 4 cut(s) 4, 323, 714, 1145
XceI RCATGY 3 cut(s) 209, 1050, 1194
XspI CTAG 3 cut(s) 83, 941, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.