Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Forward (+)

20912116 .. 20913565

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAACATGCATAGACACATGCCGAACCGGTAATACCCAAGACGATGATTCCCGGTTCTGTTGCATCAAGAATTTCTTTCGACCCGGTTTCTCTGTAAACCGGAAGATTCACCACACCCAAATCGAAGATGACGATGATGTCTGGATCAAGATGCTTGAAGAAGCCAAATCCGATGTTAAACAAGAACCCATTTTATCAAACTACTACTACGCTTCGATCACATCTCATCGATCTTTAGAGTCTGCTTTAGCTCACATCCTCTCCGTAAAGCTCAGCAATTTAAACCTACCAAGCAACACACTCTTCGAACTGTTCATAAGCGTTTTAGAAGAAAGCCCTGAGATCATCGAATCCACGAAGCAAGATCTTATAGCAGTCAAAGAAAGAGACCCAGCTTGTATAAGCTACGTTCATTGCTTCTTGGGCTTCAAAGGCTTCCTCGCTTGTCAAGCTCATCGAATAGCTCATACCCTCTGGAAACAGAACAGAAAAATCGTAGCTTTATTGATCCAAAACAGAGTATCAGAATCTTTCGCCGTCGATATTCATCCCGGAGCGAAGATCGGAAAAGGGATTCTTTTAGACCATGCGACGGGCGTGGTGATCGGAGAGACGGCGGTGGTTGGAGACAATGTTTCGATTCTACACGGAGTGACCTTGGGAGGAACAGGGAAACAGAGTGGTGATCGGCATCCGAAGATTGGTGATGGTGTGTTGATTGGAGCTGGGAGTTGTATATTGGGGAATATAACAATCGGTGAGGGAGCTAAGATTGGATCAGGGTCGGTGGTGGTTAAGGATGTGCCGGCGCGTACGACGGCGGTTGGAAATCCGGCGAGGTTGATTGGTGGGAAAGAGAATCCGAGAAAACATGATAAGATTCCTTGTCTGACTATGGACCAGACATCGTATTTAACCGAGTGGTCTGATTATGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009266 GO:0009267 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009970 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

314

Amino Acids

34.25

Weight (kDa)

6.45

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	48 - 152	3.1e-36	Serine acetyltransferase, N-terminal
Hexapep	PF00132	232 - 265	1.9e-09	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccII	CGCG	1 cut(s)	814
AciI	CCGC	2 cut(s)	620, 824
AclWI	GGATC	3 cut(s)	155, 505, 787
AcsI	RAATTY	1 cut(s)	73
AdeI	CACNNNGTG	1 cut(s)	655
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	2 cut(s)	595, 704
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	161, 433
AluBI	AGCT	9 cut(s)	254, 274, 398, 408, 455, 467, 503, 728, 770
AluI	AGCT	9 cut(s)	254, 274, 398, 408, 455, 467, 503, 728, 770
Alw26I	GTCTC	3 cut(s)	384, 608, 624
AlwI	GGATC	3 cut(s)	155, 505, 787
ApoI	RAATTY	1 cut(s)	73
AsiGI	ACCGGT	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	901
AsuC2I	CCSGG	3 cut(s)	55, 87, 555
AsuHPI	GGTGA	5 cut(s)	104, 616, 698, 719, 773
AsuII	TTCGAA	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	901
BccI	CCATC	1 cut(s)	704
BceAI	ACGGC	3 cut(s)	524, 633, 837
BcnI	CCSGG	3 cut(s)	55, 87, 555
BcoDI	GTCTC	3 cut(s)	384, 608, 624
BglII	AGATCT	1 cut(s)	367
BlpI	GCTNAGC	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	55, 87, 555
Bme18I	GGWCC	1 cut(s)	901
BmgT120I	GGNCC	1 cut(s)	901
BmrFI	CCNGG	3 cut(s)	55, 87, 555
BmsI	GCATC	3 cut(s)	75, 144, 703
Bpu1102I	GCTNAGC	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	309
BpuMI	CCSGG	3 cut(s)	55, 87, 555
Bsa29I	ATCGAT	1 cut(s)	232
BsaBI	GATNNNNATC	2 cut(s)	549, 693
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	2 cut(s)	29, 102
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 704
Bse118I	RCCGGY	2 cut(s)	29, 808
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	2 cut(s)	549, 693
BseCI	ATCGAT	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	4 cut(s)	258, 550, 694, 808
BseJI	GATNNNNATC	2 cut(s)	549, 693
BseLI	CCNNNNNNNGG	2 cut(s)	595, 704
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	289, 333
BseYI	CCCAGC	2 cut(s)	394, 728
Bsh1236I	CGCG	1 cut(s)	814
BshTI	ACCGGT	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	232
BsiSI	CCGG	7 cut(s)	30, 55, 87, 103, 555, 809, 836
BsiWI	CGTACG	1 cut(s)	815
BslI	CCNNNNNNNGG	2 cut(s)	595, 704
BsmAI	GTCTC	3 cut(s)	384, 608, 624
BsmBI	CGTCTC	1 cut(s)	608
Bso31I	GGTCTC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1720I	GCTNAGC	1 cut(s)	275
BspACI	CCGC	2 cut(s)	620, 824
BspCNI	CTCAG	2 cut(s)	288, 334
BspDI	ATCGAT	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	814
BspPI	GGATC	3 cut(s)	155, 505, 787
BspT104I	TTCGAA	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	415
BsrFI	RCCGGY	2 cut(s)	29, 808
BssAI	RCCGGY	2 cut(s)	29, 808
BssECI	CCNNGG	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	3 cut(s)	275, 342, 771
BstF5I	GGATG	4 cut(s)	258, 550, 694, 808
BstFNI	CGCG	1 cut(s)	814
BstHHI	GCGC	1 cut(s)	814
BstMAI	GTCTC	3 cut(s)	384, 608, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	426, 435, 452
BstNSI	RCATGY	2 cut(s)	12, 24
BstSCI	CCNGG	3 cut(s)	53, 85, 553
BstUI	CGCG	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	232
BsuTUI	ATCGAT	1 cut(s)	232
BtsCI	GGATG	4 cut(s)	258, 550, 694, 808
Cac8I	GCNNGC	1 cut(s)	810
CfoI	GCGC	1 cut(s)	814
Cfr10I	RCCGGY	2 cut(s)	29, 808
Cfr13I	GGNCC	1 cut(s)	901
ClaI	ATCGAT	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	816
CspAI	ACCGGT	1 cut(s)	29
CviAII	CATG	4 cut(s)	9, 21, 590, 875
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	3 cut(s)	275, 342, 771
DraI	TTTAAA	1 cut(s)	285
DraIII	CACNNNGTG	1 cut(s)	655
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	4 cut(s)	12, 24, 593, 878
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 564, 596
FatI	CATG	4 cut(s)	8, 20, 589, 874
FokI	GGATG	4 cut(s)	245, 537, 681, 815
GlaI	GCGC	1 cut(s)	813
GsaI	CCCAGC	2 cut(s)	398, 732
HapII	CCGG	7 cut(s)	30, 55, 87, 103, 555, 809, 836
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	4 cut(s)	12, 24, 593, 878
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HinfI	GANTC	9 cut(s)	50, 109, 242, 353, 530, 577, 643, 862, 883
HpaII	CCGG	7 cut(s)	30, 55, 87, 103, 555, 809, 836
HphI	GGTGA	5 cut(s)	104, 616, 698, 719, 773
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	8 cut(s)	175, 529, 569, 611, 699, 867, 894, 931
Hpy188III	TCNNGA	4 cut(s)	70, 145, 151, 478
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	3 cut(s)	545, 598, 823
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	2 cut(s)	12, 66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	426, 435, 452
HpyF3I	CTNAG	3 cut(s)	275, 342, 771
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	12, 24, 593, 878
HspAI	GCGC	1 cut(s)	812
KroI	GCCGGC	1 cut(s)	808
KroNI	GCCGGC	1 cut(s)	810
LmnI	GCTCC	3 cut(s)	557, 725, 767
LweI	GCATC	3 cut(s)	75, 144, 703
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	655
MboII	GAAGA	7 cut(s)	118, 140, 173, 298, 344, 574, 712
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	2 cut(s)	73, 280
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	2 cut(s)	607, 808
MnlI	CCTC	6 cut(s)	272, 452, 485, 659, 757, 834
Mph1103I	ATGCAT	1 cut(s)	14
MroNI	GCCGGC	1 cut(s)	808
MseI	TTAA	5 cut(s)	180, 284, 798, 917, 943
MspI	CCGG	7 cut(s)	30, 55, 87, 103, 555, 809, 836
MspR9I	CCNGG	3 cut(s)	55, 87, 555
MvnI	CGCG	1 cut(s)	814
MwoI	GCNNNNNNNGC	3 cut(s)	426, 435, 452
NaeI	GCCGGC	1 cut(s)	810
NciI	CCSGG	3 cut(s)	55, 87, 555
NgoMIV	GCCGGC	1 cut(s)	808
NlaIII	CATG	4 cut(s)	12, 24, 593, 878
NmuCI	GTSAC	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	2 cut(s)	12, 24
NspV	TTCGAA	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	810
PfeI	GAWTC	8 cut(s)	50, 109, 353, 530, 577, 643, 862, 883
Pfl23II	CGTACG	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	553
PinAI	ACCGGT	1 cut(s)	29
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspFI	CCCAGC	2 cut(s)	394, 728
PspLI	CGTACG	1 cut(s)	815
PspPI	GGNCC	1 cut(s)	901
PsrI	GAACNNNNNNTAC	2 cut(s)	19, 51
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
SaqAI	TTAA	5 cut(s)	180, 284, 798, 917, 943
Sau96I	GGNCC	1 cut(s)	901
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	55, 87, 555
SfaNI	GCATC	3 cut(s)	75, 144, 703
SfuI	TTCGAA	1 cut(s)	309
SinI	GGWCC	1 cut(s)	901
Sse9I	AATT	2 cut(s)	73, 280
SsiI	CCGC	2 cut(s)	620, 824
StyD4I	CCNGG	3 cut(s)	53, 85, 553
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	9 cut(s)	82, 126, 218, 232, 309, 351, 460, 543, 641
TasI	AATT	2 cut(s)	73, 280
TfiI	GAWTC	8 cut(s)	50, 109, 353, 530, 577, 643, 862, 883
Tru1I	TTAA	5 cut(s)	180, 284, 798, 917, 943
Tru9I	TTAA	5 cut(s)	180, 284, 798, 917, 943
TseFI	GTSAC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	3 cut(s)	307, 404, 539
TspGWI	ACGGA	2 cut(s)	256, 666
VpaK11BI	GGWCC	1 cut(s)	901
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	2 cut(s)	12, 24
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.