Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Forward (+)

22553953 .. 22555526

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTGCTTGCATCGACACTTCCCGACCCAACCCACCCAAAAACAACAACCAAATCTCTCAAGACAAAGACAACCAATACAATTTCATCAAGTTCTGCCGCGTGCCCATCTCGCAGAACCGCACCAAAACCACCCAGACTCGCAGAGTCGCTGATGATCCGAATGAAGAAAAGGCAGATTATTTGTGGGTCAAAATGCTAGAAGAAGCTCGTTCTGATATCGACGAGGAACCCATTTTGTCTGGCTACTATTATGCTTCAATATTGTGTCACAGTTCTATTGAAAGCGCCTTGGCGAATCATTTGGCTGTGAAGTTGAGCGATTCTAGTCTTTCCTGCAGTACCCTTGTGGATATTTTCATGGGGGTGTTTCTAGAAGATGGGGAGGTCATCAGGGCTGTCAAGGATGATTTGAGAGCAGTGAAGGAGAGGGACCCAGCTTGCATTAGTTATGCTCAGTGCTTCTTGAATTTCAAGGGGTTTCTGGCTTGCCAGGCGCATAGGGTGGCGCATAAGCTGTGGTCAGAGGGCAGGAAGGTGTTGGCCTTGTTGATTCAGAACAGGGTTTCCGAGGTTTTCGCGGTGGATATTCATCCCGGGGCGAAAATCGGACACGGGATATTGCTGGATCATGCTACTGGTGTTGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCGATTTTGCACAACGTGACTTTGGGAGGGACTGGGAAGGCGTGTGGGGATAGGCATCCGAAGATTGGGGATGGGGTGCTTATAGGGGCGGGGACTTGTATATTGGGGAACATTAGGATTGGGGAGGGAGCTAAGATTGGGGCTTGTTCTGTGGTGCTGAAAGATGTGCCAGCAAGAACTACCGCGGTTGGGAACCCGGCTAGGTTGATTGGAGGGAAGGAAAATCCAAAGAAGCTTGACAAGATGGCTAGCTTTACGATGGACCATACTTCCCACATAACTGAGTGGTCTGATTATGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

329

Amino Acids

35.7

Weight (kDa)

6.82

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	62 - 166	3.2e-34	Serine acetyltransferase, N-terminal
Hexapep	PF00132	246 - 280	1.7e-09	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	102, 581, 866
AciI	CCGC	7 cut(s)	100, 121, 581, 662, 770, 864, 866
AclWI	GGATC	2 cut(s)	152, 636
AcsI	RAATTY	1 cut(s)	469
AdeI	CACNNNGTG	1 cut(s)	697
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	746, 870
AgsI	TTSAA	4 cut(s)	261, 284, 469, 475
AjnI	CCWGG	1 cut(s)	492
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
AluBI	AGCT	6 cut(s)	209, 440, 517, 812, 916, 933
AluI	AGCT	6 cut(s)	209, 440, 517, 812, 916, 933
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	2 cut(s)	152, 636
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	469
AspLEI	GCGC	3 cut(s)	290, 499, 511
AspS9I	GGNCC	2 cut(s)	433, 943
AsuC2I	CCSGG	3 cut(s)	597, 598, 878
AsuHPI	GGTGA	1 cut(s)	676
AsuNHI	GCTAGC	1 cut(s)	929
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	2 cut(s)	433, 943
BaeGI	GKGCMC	1 cut(s)	108
BccI	CCATC	5 cut(s)	116, 374, 746, 919, 934
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	494
BcnI	CCSGG	3 cut(s)	597, 598, 878
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	5 cut(s)	200, 327, 374, 882, 930
BfmI	CTRYAG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	2 cut(s)	6, 100
BlsI	GCNGC	2 cut(s)	7, 101
Bme1390I	CCNGG	4 cut(s)	494, 597, 598, 878
Bme18I	GGWCC	2 cut(s)	433, 943
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	433, 943
BmiI	GGNNCC	4 cut(s)	231, 434, 435, 875
BmrFI	CCNGG	4 cut(s)	494, 597, 598, 878
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	2 cut(s)	21, 745
BmtI	GCTAGC	1 cut(s)	933
BmuI	ACTGGG	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	45
BpuMI	CCSGG	3 cut(s)	597, 598, 878
BsaBI	GATNNNNATC	2 cut(s)	591, 735
BsaJI	CCNNGG	5 cut(s)	291, 570, 596, 597, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	746, 870
Bse1I	ACTGG	2 cut(s)	643, 718
Bse8I	GATNNNNATC	2 cut(s)	591, 735
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	5 cut(s)	291, 570, 596, 597, 864
BseGI	GGATG	4 cut(s)	412, 592, 736, 757
BseJI	GATNNNNATC	2 cut(s)	591, 735
BseLI	CCNNNNNNNGG	2 cut(s)	746, 870
BseMII	CTCAG	2 cut(s)	470, 954
BseNI	ACTGG	2 cut(s)	643, 718
BseSI	GKGCMC	1 cut(s)	108
BseYI	CCCAGC	1 cut(s)	436
Bsh1236I	CGCG	3 cut(s)	102, 581, 866
BshFI	GGCC	1 cut(s)	545
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	2 cut(s)	597, 878
BslFI	GGGAC	3 cut(s)	446, 724, 787
BslI	CCNNNNNNNGG	2 cut(s)	746, 870
BsmAI	GTCTC	1 cut(s)	650
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	3 cut(s)	446, 724, 787
BsnI	GGCC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	157, 628
BspACI	CCGC	7 cut(s)	100, 121, 581, 662, 770, 864, 866
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	2 cut(s)	469, 955
BspFNI	CGCG	3 cut(s)	102, 581, 866
BspLI	GGNNCC	4 cut(s)	231, 434, 435, 875
BspMAI	CTGCAG	1 cut(s)	341
BspOI	GCTAGC	1 cut(s)	933
BspPI	GGATC	2 cut(s)	152, 636
BsrI	ACTGG	2 cut(s)	643, 718
BssECI	CCNNGG	5 cut(s)	291, 570, 596, 597, 864
BssMI	GATC	2 cut(s)	157, 628
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	275
BstC8I	GCNNGC	6 cut(s)	10, 104, 442, 490, 852, 931
BstDEI	CTNAG	3 cut(s)	456, 813, 963
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	4 cut(s)	412, 592, 736, 757
BstFNI	CGCG	3 cut(s)	102, 581, 866
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	3 cut(s)	290, 499, 511
BstKTI	GATC	2 cut(s)	160, 631
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	2 cut(s)	157, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 494
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	4 cut(s)	492, 595, 596, 876
BstSFI	CTRYAG	1 cut(s)	337
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	3 cut(s)	102, 581, 866
BsuRI	GGCC	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	4 cut(s)	412, 592, 736, 757
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	426, 464
Cac8I	GCNNGC	6 cut(s)	10, 104, 442, 490, 852, 931
CfoI	GCGC	3 cut(s)	290, 499, 511
Cfr13I	GGNCC	2 cut(s)	433, 943
Cfr42I	CCGCGG	1 cut(s)	867
Cfr9I	CCCGGG	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	361, 632
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	3 cut(s)	456, 813, 963
DpnI	GATC	2 cut(s)	159, 630
DpnII	GATC	2 cut(s)	157, 628
DraIII	CACNNNGTG	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	433, 943
Eco88I	CYCGRG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	2 cut(s)	364, 635
FaqI	GGGAC	3 cut(s)	446, 724, 787
FatI	CATG	2 cut(s)	360, 631
FauI	CCCGC	1 cut(s)	763
Fnu4HI	GCNGC	2 cut(s)	6, 100
FokI	GGATG	4 cut(s)	419, 579, 723, 764
Fsp4HI	GCNGC	2 cut(s)	6, 100
FspBI	CTAG	5 cut(s)	200, 327, 374, 882, 930
GlaI	GCGC	3 cut(s)	289, 498, 510
GluI	GCNGC	2 cut(s)	6, 100
GsaI	CCCAGC	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	2 cut(s)	597, 878
HhaI	GCGC	3 cut(s)	290, 499, 511
Hin1II	CATG	2 cut(s)	364, 635
Hin6I	GCGC	3 cut(s)	288, 497, 509
HinP1I	GCGC	3 cut(s)	288, 497, 509
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	5 cut(s)	139, 147, 298, 323, 553
HpaII	CCGG	2 cut(s)	597, 878
HphI	GGTGA	1 cut(s)	676
Hpy188I	TCNGA	8 cut(s)	162, 217, 526, 558, 571, 611, 741, 973
Hpy188III	TCNNGA	4 cut(s)	24, 62, 374, 466
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	4 cut(s)	418, 529, 712, 892
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	4 cut(s)	12, 339, 444, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 494
HpyF3I	CTNAG	3 cut(s)	456, 813, 963
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	2 cut(s)	364, 635
HspAI	GCGC	3 cut(s)	288, 497, 509
KflI	GGGWCCC	1 cut(s)	433
KspI	CCGCGG	1 cut(s)	867
Kzo9I	GATC	2 cut(s)	157, 628
LmnI	GCTCC	1 cut(s)	809
LweI	GCATC	2 cut(s)	21, 745
MaeI	CTAG	5 cut(s)	200, 327, 374, 882, 930
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	269, 697
MalI	GATC	2 cut(s)	159, 630
MboI	GATC	2 cut(s)	157, 628
MboII	GAAGA	4 cut(s)	179, 215, 389, 754
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	82, 469
MlyI	GAGTC	2 cut(s)	133, 156
MnlI	CCTC	8 cut(s)	220, 379, 423, 520, 565, 701, 799, 887
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	2 cut(s)	597, 878
MspR9I	CCNGG	4 cut(s)	494, 597, 598, 878
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	3 cut(s)	102, 581, 866
MwoI	GCNNNNNNNGC	2 cut(s)	112, 494
NciI	CCSGG	3 cut(s)	597, 598, 878
NdeII	GATC	2 cut(s)	157, 628
NheI	GCTAGC	1 cut(s)	929
NlaIII	CATG	2 cut(s)	364, 635
NlaIV	GGNNCC	4 cut(s)	231, 434, 435, 875
NmuCI	GTSAC	2 cut(s)	269, 697
PfeI	GAWTC	3 cut(s)	298, 323, 553
PkrI	GCNGC	2 cut(s)	7, 101
PleI	GAGTC	2 cut(s)	133, 155
PpsI	GAGTC	2 cut(s)	133, 155
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	4 cut(s)	231, 434, 435, 875
PspPI	GGNCC	2 cut(s)	433, 943
PspPPI	RGGWCCY	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	365
SacII	CCGCGG	1 cut(s)	867
SatI	GCNGC	2 cut(s)	6, 100
Sau3AI	GATC	2 cut(s)	157, 628
Sau96I	GGNCC	2 cut(s)	433, 943
SchI	GAGTC	2 cut(s)	133, 156
ScrFI	CCNGG	4 cut(s)	494, 597, 598, 878
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	2 cut(s)	21, 745
SfcI	CTRYAG	1 cut(s)	337
Sfr303I	CCGCGG	1 cut(s)	867
SgrBI	CCGCGG	1 cut(s)	867
SinI	GGWCC	2 cut(s)	433, 943
SmaI	CCCGGG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	82, 469
SsiI	CCGC	7 cut(s)	100, 121, 581, 662, 770, 864, 866
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	5 cut(s)	200, 327, 374, 882, 930
StyD4I	CCNGG	4 cut(s)	492, 595, 596, 876
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	3 cut(s)	15, 222, 683
TasI	AATT	2 cut(s)	82, 469
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	3 cut(s)	298, 323, 553
TscAI	CASTG	2 cut(s)	426, 464
TseFI	GTSAC	2 cut(s)	269, 697
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	269, 697
TspDTI	ATGAA	4 cut(s)	76, 180, 349, 581
TspMI	CCCGGG	1 cut(s)	596
TspRI	CASTG	2 cut(s)	426, 464
VpaK11BI	GGWCC	2 cut(s)	433, 943
XapI	RAATTY	1 cut(s)	469
XbaI	TCTAGA	1 cut(s)	373
XmaI	CCCGGG	1 cut(s)	596
XspI	CTAG	5 cut(s)	200, 327, 374, 882, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.