Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Forward (+)

59248020 .. 59253356

Gene Structure 5337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG356900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTCTTATGACCAGGCCTTCTCCACACAATCCCACTTGACCACTTACATTTTTAATTTCTCAATTTCTCTTACTTTCCCAACAAAAAACTCTCATATTTCCATGAAAGCTTTGCTCATACCTCGCTCCCTATATAATGCCTCCCTTTTCTTGTCAACCCCAAAACTCCTCCCACCCAAATTCTCTACTCACAACACCCTCTTGAATCCCATGGCTGCTTGCATCAACACTTGCCGAGCCAACACACCCACAAACCAGCCACTCCCTCGGGACCAAGAAACACAATACAATTTCATGATGTACTGTCGTGTTTCCGATCAAGTTTCCCACATACCCATTTGCCAGAACCGAACAAAAACCACGCAGACTCGGAGACTGGTGGATGATCTGGACCCAGAGGAAGAAAAGGGCGATGCTTTATGGCTCAAAATGCAAGACGAAGCTCGCTCGGATATTGATCAGGAACCCATTTTGTCTAGCTACTATTACACTTCCATTTTGTCTCACTCCTCCCTGGAAAGCGCGTTGGCTAATCATCTGTCTGTCAAGTTGAGCAATTCTAGTCTTTCCTGTAGTACCCTGGTGGATATTTTCATGGTGGTGTTTCTAGAAGATGGGGAAGTCATTAGGGCTGTGAGGGATGATTTAAGAGCAGTGAAGGAGAGAGACCCAGCTTGCTTTAGTTATACTCAGTGCTTCTTGAATTTCAAGGGCTTTTTGGCTTGCCAGGCACATAGGGTGGCACATAAGTTGTGGTCACAGGGCAGGAAGGTGTTGGCCTTGTTGATTCAGAACAGGGTTTCGGAGGTTTTCGCTGTGGATATTCATCCCGGGGCGAAAATCGGACATGGGTTGTTGCTGGATCATGCTACTGGTTTAGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCAATTTTACACAATGTGACATTGGGAGGGACTGGGAAGGTGTGTGGGGATAGGCATCCAAAAATTGGTGATGGGGTGCTTATAGGGGCAGGGACTTGTATTTTGGGGAACATTAGAATTGGGGAGGGAGCTAAGATTGGGGCTTGTTCTGTGGTGCTGAAAGATGTGCCAGCAAGAACTACTGCAGTTGGGAACCCAGCTAGGTTGATTGGAGGGAAGGAGAATCCAAAGAAGCTTGACAAGATGGCTAGCTTCACTATGGACCACACTTCCCACATAACTGAGTGGTCTGATTATGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

406

Amino Acids

44.74

Weight (kDa)

7.98

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	140 - 244	7.8e-36	Serine acetyltransferase, N-terminal
Hexapep	PF00132	324 - 358	2.3e-09	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	980
AccII	CGCG	1 cut(s)	524
AciI	CCGC	1 cut(s)	896
AclWI	GGATC	1 cut(s)	870
AcsI	RAATTY	2 cut(s)	179, 703
AdeI	CACNNNGTG	1 cut(s)	931
AfaI	GTAC	2 cut(s)	302, 577
AfiI	CCNNNNNNNGG	1 cut(s)	980
AgsI	TTSAA	3 cut(s)	205, 703, 709
AjnI	CCWGG	4 cut(s)	12, 513, 579, 726
AluBI	AGCT	8 cut(s)	110, 443, 480, 674, 1046, 1115, 1150, 1167
AluI	AGCT	8 cut(s)	110, 443, 480, 674, 1046, 1115, 1150, 1167
Alw26I	GTCTC	4 cut(s)	367, 507, 660, 884
AlwI	GGATC	1 cut(s)	870
Ama87I	CYCGRG	2 cut(s)	267, 830
AoxI	GGCC	2 cut(s)	15, 777
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	179, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	1000, 1032
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	3 cut(s)	271, 391, 1177
AsuC2I	CCSGG	2 cut(s)	831, 832
AsuHPI	GGTGA	2 cut(s)	910, 995
AsuNHI	GCTAGC	1 cut(s)	1163
AvaI	CYCGRG	2 cut(s)	267, 830
AvaII	GGWCC	3 cut(s)	271, 391, 1177
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	3 cut(s)	608, 980, 1153
BceAI	ACGGC	1 cut(s)	909
BciT130I	CCWGG	4 cut(s)	14, 515, 581, 728
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	2 cut(s)	831, 832
BcoDI	GTCTC	4 cut(s)	367, 507, 660, 884
BfaI	CTAG	5 cut(s)	477, 561, 608, 1116, 1164
BfmI	CTRYAG	2 cut(s)	571, 1098
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	6 cut(s)	14, 515, 581, 728, 831, 832
Bme18I	GGWCC	3 cut(s)	271, 391, 1177
BmeT110I	CYCGRG	2 cut(s)	267, 830
BmgT120I	GGNCC	3 cut(s)	271, 391, 1177
BmiI	GGNNCC	4 cut(s)	272, 393, 465, 1109
BmrFI	CCNGG	6 cut(s)	14, 515, 581, 728, 831, 832
BmrI	ACTGGG	1 cut(s)	957
BmsI	GCATC	3 cut(s)	231, 403, 979
BmtI	GCTAGC	1 cut(s)	1167
BmuI	ACTGGG	1 cut(s)	957
BpuMI	CCSGG	2 cut(s)	831, 832
BsaBI	GATNNNNATC	3 cut(s)	456, 825, 969
BsaI	GGTCTC	1 cut(s)	660
BsaJI	CCNNGG	6 cut(s)	210, 266, 513, 579, 830, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	980
Bse1I	ACTGG	3 cut(s)	381, 877, 952
Bse8I	GATNNNNATC	3 cut(s)	456, 825, 969
BseBI	CCWGG	4 cut(s)	14, 515, 581, 728
BseDI	CCNNGG	6 cut(s)	210, 266, 513, 579, 830, 831
BseGI	GGATG	4 cut(s)	388, 646, 826, 970
BseJI	GATNNNNATC	3 cut(s)	456, 825, 969
BseLI	CCNNNNNNNGG	1 cut(s)	980
BseMII	CTCAG	2 cut(s)	704, 1188
BseNI	ACTGG	3 cut(s)	381, 877, 952
BseRI	GAGGAG	2 cut(s)	158, 499
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	2 cut(s)	670, 1111
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	2 cut(s)	17, 779
BsiHKCI	CYCGRG	2 cut(s)	267, 830
BsiSI	CCGG	1 cut(s)	831
BslFI	GGGAC	3 cut(s)	284, 958, 1021
BslI	CCNNNNNNNGG	1 cut(s)	980
BsmAI	GTCTC	4 cut(s)	367, 507, 660, 884
BsmBI	CGTCTC	1 cut(s)	884
BsmFI	GGGAC	3 cut(s)	284, 958, 1021
BsnI	GGCC	2 cut(s)	17, 779
Bso31I	GGTCTC	1 cut(s)	660
BsoBI	CYCGRG	2 cut(s)	267, 830
Bsp143I	GATC	4 cut(s)	316, 385, 457, 862
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	1 cut(s)	896
BspANI	GGCC	2 cut(s)	17, 779
BspCNI	CTCAG	2 cut(s)	703, 1189
BspFNI	CGCG	1 cut(s)	524
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	4 cut(s)	272, 393, 465, 1109
BspMAI	CTGCAG	1 cut(s)	1102
BspOI	GCTAGC	1 cut(s)	1167
BspPI	GGATC	1 cut(s)	870
BspTNI	GGTCTC	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	381, 877, 952
BssECI	CCNNGG	6 cut(s)	210, 266, 513, 579, 830, 831
BssMI	GATC	4 cut(s)	316, 385, 457, 862
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	4 cut(s)	14, 515, 581, 728
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	6 cut(s)	220, 445, 676, 724, 1086, 1165
BstDEI	CTNAG	3 cut(s)	690, 1047, 1197
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	4 cut(s)	388, 646, 826, 970
BstFNI	CGCG	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	4 cut(s)	319, 388, 460, 865
BstMAI	GTCTC	4 cut(s)	367, 507, 660, 884
BstMBI	GATC	4 cut(s)	316, 385, 457, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	430, 728
BstNI	CCWGG	4 cut(s)	14, 515, 581, 728
BstSCI	CCNGG	6 cut(s)	12, 513, 579, 726, 829, 830
BstSFI	CTRYAG	2 cut(s)	571, 1098
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	17, 779
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	388, 646, 826, 970
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	660, 698
Cac8I	GCNNGC	6 cut(s)	220, 445, 676, 724, 1086, 1165
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	3 cut(s)	271, 391, 1177
Cfr9I	CCCGGG	1 cut(s)	830
Csp6I	GTAC	2 cut(s)	301, 576
CviAII	CATG	6 cut(s)	103, 211, 295, 595, 848, 866
CviQI	GTAC	2 cut(s)	301, 576
DdeI	CTNAG	3 cut(s)	690, 1047, 1197
DpnI	GATC	4 cut(s)	318, 387, 459, 864
DpnII	GATC	4 cut(s)	316, 385, 457, 862
DraIII	CACNNNGTG	1 cut(s)	931
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	660
Eco47I	GGWCC	3 cut(s)	271, 391, 1177
Eco88I	CYCGRG	2 cut(s)	267, 830
EcoRII	CCWGG	4 cut(s)	12, 513, 579, 726
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	884
FaeI	CATG	6 cut(s)	106, 214, 298, 598, 851, 869
FaqI	GGGAC	3 cut(s)	284, 958, 1021
FatI	CATG	6 cut(s)	102, 210, 294, 594, 847, 865
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	4 cut(s)	395, 653, 813, 957
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	5 cut(s)	477, 561, 608, 1116, 1164
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	2 cut(s)	674, 1115
HaeIII	GGCC	2 cut(s)	17, 779
HapII	CCGG	1 cut(s)	831
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	6 cut(s)	106, 214, 298, 598, 851, 869
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	108, 1148
HinfI	GANTC	4 cut(s)	205, 367, 787, 1138
HpaII	CCGG	1 cut(s)	831
HphI	GGTGA	2 cut(s)	910, 995
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	7 cut(s)	316, 372, 451, 792, 805, 845, 1207
Hpy188III	TCNNGA	7 cut(s)	202, 269, 295, 389, 461, 608, 700
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	5 cut(s)	28, 652, 763, 946, 1126
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	3 cut(s)	222, 433, 1100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	430, 728
HpyF3I	CTNAG	3 cut(s)	690, 1047, 1197
Hsp92II	CATG	6 cut(s)	106, 214, 298, 598, 851, 869
HspAI	GCGC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	316, 385, 457, 862
LmnI	GCTCC	2 cut(s)	131, 1043
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	3 cut(s)	231, 403, 979
MaeI	CTAG	5 cut(s)	477, 561, 608, 1116, 1164
MaeIII	GTNAC	2 cut(s)	756, 931
MalI	GATC	4 cut(s)	318, 387, 459, 864
MboI	GATC	4 cut(s)	316, 385, 457, 862
MboII	GAAGA	2 cut(s)	413, 623
MluCI	AATT	9 cut(s)	55, 63, 179, 289, 556, 703, 918, 978, 1032
MlyI	GAGTC	1 cut(s)	361
MseI	TTAA	2 cut(s)	54, 647
MslI	CAYNNNNRTG	1 cut(s)	599
MspI	CCGG	1 cut(s)	831
MspR9I	CCNGG	6 cut(s)	14, 515, 581, 728, 831, 832
MvaI	CCWGG	4 cut(s)	14, 515, 581, 728
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	430, 728
NciI	CCSGG	2 cut(s)	831, 832
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	4 cut(s)	316, 385, 457, 862
NheI	GCTAGC	1 cut(s)	1163
NlaIII	CATG	6 cut(s)	106, 214, 298, 598, 851, 869
NlaIV	GGNNCC	4 cut(s)	272, 393, 465, 1109
NmeAIII	GCCGAG	1 cut(s)	260
NmuCI	GTSAC	2 cut(s)	756, 931
PagI	TCATGA	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	205, 787, 1138
PflMI	CCANNNNNTGG	1 cut(s)	980
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	4 cut(s)	12, 513, 579, 726
PspFI	CCCAGC	2 cut(s)	670, 1111
PspGI	CCWGG	4 cut(s)	12, 513, 579, 726
PspN4I	GGNNCC	4 cut(s)	272, 393, 465, 1109
PspPI	GGNCC	3 cut(s)	271, 391, 1177
PstI	CTGCAG	1 cut(s)	1102
RsaI	GTAC	2 cut(s)	302, 577
RsaNI	GTAC	2 cut(s)	301, 576
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	54, 647
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	4 cut(s)	316, 385, 457, 862
Sau96I	GGNCC	3 cut(s)	271, 391, 1177
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	6 cut(s)	14, 515, 581, 728, 831, 832
SfaNI	GCATC	3 cut(s)	231, 403, 979
SfcI	CTRYAG	2 cut(s)	571, 1098
SinI	GGWCC	3 cut(s)	271, 391, 1177
SmaI	CCCGGG	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	9 cut(s)	55, 63, 179, 289, 556, 703, 918, 978, 1032
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	896
SspMI	CTAG	5 cut(s)	477, 561, 608, 1116, 1164
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	6 cut(s)	12, 513, 579, 726, 829, 830
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	305
TasI	AATT	9 cut(s)	55, 63, 179, 289, 556, 703, 918, 978, 1032
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	205, 787, 1138
Tru1I	TTAA	2 cut(s)	54, 647
Tru9I	TTAA	2 cut(s)	54, 647
TscAI	CASTG	2 cut(s)	660, 698
TseFI	GTSAC	2 cut(s)	756, 931
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	2 cut(s)	756, 931
TspDTI	ATGAA	4 cut(s)	119, 283, 583, 815
TspMI	CCCGGG	1 cut(s)	830
TspRI	CASTG	2 cut(s)	660, 698
Van91I	CCANNNNNTGG	1 cut(s)	980
VpaK11BI	GGWCC	3 cut(s)	271, 391, 1177
XapI	RAATTY	2 cut(s)	179, 703
XbaI	TCTAGA	1 cut(s)	607
XmaI	CCCGGG	1 cut(s)	830
XspI	CTAG	5 cut(s)	477, 561, 608, 1116, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.