Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Reverse (-)

32887296 .. 32887559

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0286500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGAACACATACGGTGCGGTTGACCTGTAACAAGTTCCCCAGGATATGTTATACTAAGGGAAGCCCAGGACCTCACTGCTGCAAGAAGAAATGTGTTAATGTTTTAACAGACAAGCTTAATTGTGGGAAATGTGGAAAGAAATGCAAGTACAGTGAGGTTTGCTGCAAAGGGAAATCTTTCAACCGGAGTCATTGTGGTGGATGTAACAATAGGTGCAAAGATGGAGGGTTTTGTGCATTCGGCATATGCAACTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

87

Amino Acids

9.61

Weight (kDa)

9.4

Isoelectric Point (pI)

20.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	9 - 87	4.7e-25	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	41, 67
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	81, 165
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	68, 152
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	43, 69
BisI	GCNGC	2 cut(s)	82, 166
BlsI	GCNGC	2 cut(s)	83, 167
Bme1390I	CCNGG	2 cut(s)	43, 69
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	43, 69
BsaJI	CCNNGG	2 cut(s)	41, 67
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
BseBI	CCWGG	2 cut(s)	43, 69
BseDI	CCNNGG	2 cut(s)	41, 67
BseGI	GGATG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	68, 152
BsiSI	CCGG	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	239
BspACI	CCGC	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	41, 67
Bst2UI	CCWGG	2 cut(s)	43, 69
Bst4CI	ACNGT	2 cut(s)	16, 155
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	209
BstNI	CCWGG	2 cut(s)	43, 69
BstSCI	CCNGG	2 cut(s)	41, 67
BstV1I	GCAGC	2 cut(s)	68, 152
BtsCI	GGATG	1 cut(s)	209
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 160
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	2 cut(s)	66, 118
CviKI_1	RGCY	2 cut(s)	66, 118
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	41, 67
EcoT22I	ATGCAT	1 cut(s)	262
FaiI	YATR	7 cut(s)	12, 49, 54, 248, 250, 258, 262
FauNDI	CATATG	1 cut(s)	248
Fnu4HI	GCNGC	2 cut(s)	82, 166
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	82, 166
GluI	GCNGC	2 cut(s)	82, 166
HapII	CCGG	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	16, 155
HpyCH4V	TGCA	7 cut(s)	84, 147, 168, 219, 239, 252, 260
HpyF3I	CTNAG	1 cut(s)	57
LpnPI	CCDG	6 cut(s)	28, 40, 54, 55, 81, 200
Lsp1109I	GCAGC	2 cut(s)	68, 152
MaeIII	GTNAC	2 cut(s)	29, 206
MboII	GAAGA	1 cut(s)	100
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	84, 151, 221
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	3 cut(s)	99, 107, 120
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	43, 69
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	2 cut(s)	43, 69
NdeI	CATATG	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	83, 167
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	41, 67
PspGI	CCWGG	2 cut(s)	41, 67
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	99, 107, 120
SatI	GCNGC	2 cut(s)	82, 166
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	43, 69
SetI	ASST	5 cut(s)	29, 76, 120, 162, 218
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	41, 67
TaaI	ACNGT	2 cut(s)	16, 155
TasI	AATT	1 cut(s)	121
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	3 cut(s)	99, 107, 120
Tru9I	TTAA	3 cut(s)	99, 107, 120
TscAI	CASTG	2 cut(s)	83, 160
TseI	GCWGC	2 cut(s)	81, 165
TspRI	CASTG	2 cut(s)	83, 160
VpaK11BI	GGWCC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.