Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Forward (+)

51588157 .. 51592227

Gene Structure 4071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG391900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAAAGCTTTGCTCATACCTCGCTCCCTATATAATGCCTCCCTTTTCTTGACAACCCCAAAACTCCCCCCACCCAATTTCTCTACTCACAACACCCTCTTGAATCCCATGGCTGCTTGCATCAACACTTCCCGAGCCAACACACCCACAAACCAGCCACTCCCTCGGGACCATGAAACACAATACAATTTCATCAAGTACTGTCGTGTTTCCGATCAAGTTTCCCACATACCCATTTGCCAGAACCGAACAAAAACCACGCAGACTCGCAGACTGGTGGATGATCTGGACCCAGAGGAAGAAAGGGGCGATGCTTTATGGCTCAAAATGCAAGACGAAGCCCGCTCGGATATTGATCAGGAACCCATTTTGTCTAGCTACTATTACACTTCTATTTTGTCCCACACCTCCCTGGAAAGCGCGTTGGCTAATCATTTGTCTGTCAAGTTGAGCAATTCTAGTCTTTCCAGTAGTACCCTTGTGGATATTTTCATGGGGGTGTTTCTAGAAGATGGGGAAGTCATTAGGGCTGTGAGGGATGATTTAAGAGCAGTGAAGGAGAGAGACCCGGCTTGCATTAGTTATACTCAGTGCTTCTTGAATTTCAAGGGCTTTTTGGCTTGCCAGTCACATAGGGTGGCACATAAGTTGTGGTCACAGGGCAGGAAGGTGTTGGCCTTGTTGATTCAGAACAGGGTTTCGGAGGTTTTCGCTGTGGATATTCATCCCGGGGCGAAAATCGGACATGGGTTGTTGCTGGATCATGCTACTGGTTTAGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCAATTTTGCACAATGTGACGTTGGGAGGGACTGGGAAGGTGTGTGGGGATAGGCATCCGAAAATTGGTGATGGGGTGCTTATAGGGGCAGGGACTTGTATTTTGGGGAACATTAGAATTGGGGAGGGAGCTAAGATTGGGGCTTGTTCTGTGGTGCTGAAAGATGTGCCAGCAAGAACTACTGCAGTTGGGAACCCAGCTAGGTTGATTGGAGGGAAGGAGAATCCAAAGAAGCTTGACAAGATGGCTAGCTTCACTATGGACCATACTTCCCACATAACTGAGTGGTCTGATTATGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

372

Amino Acids

40.76

Weight (kDa)

8.05

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	106 - 210	9.2e-37	Serine acetyltransferase, N-terminal
Hexapep	PF00132	290 - 324	2e-09	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	422
AciI	CCGC	2 cut(s)	343, 794
AclWI	GGATC	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	601
AdeI	CACNNNGTG	1 cut(s)	829
AfaI	GTAC	2 cut(s)	200, 475
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	3 cut(s)	103, 601, 607
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	6 cut(s)	8, 378, 944, 1013, 1048, 1065
AluI	AGCT	6 cut(s)	8, 378, 944, 1013, 1048, 1065
Alw26I	GTCTC	2 cut(s)	558, 782
AlwI	GGATC	1 cut(s)	768
Ama87I	CYCGRG	3 cut(s)	132, 165, 728
AoxI	GGCC	1 cut(s)	675
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	169, 289, 1075
AsuC2I	CCSGG	3 cut(s)	569, 729, 730
AsuHPI	GGTGA	2 cut(s)	808, 893
AsuNHI	GCTAGC	1 cut(s)	1061
AvaI	CYCGRG	3 cut(s)	132, 165, 728
AvaII	GGWCC	3 cut(s)	169, 289, 1075
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	506, 878, 1051
BceAI	ACGGC	1 cut(s)	807
BciT130I	CCWGG	1 cut(s)	413
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	3 cut(s)	569, 729, 730
BcoDI	GTCTC	2 cut(s)	558, 782
BfaI	CTAG	5 cut(s)	375, 459, 506, 1014, 1062
BfmI	CTRYAG	1 cut(s)	996
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	4 cut(s)	413, 569, 729, 730
Bme18I	GGWCC	3 cut(s)	169, 289, 1075
BmeT110I	CYCGRG	3 cut(s)	132, 165, 728
BmgT120I	GGNCC	3 cut(s)	169, 289, 1075
BmiI	GGNNCC	4 cut(s)	170, 291, 363, 1007
BmrFI	CCNGG	4 cut(s)	413, 569, 729, 730
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	3 cut(s)	129, 301, 877
BmtI	GCTAGC	1 cut(s)	1065
BmuI	ACTGGG	1 cut(s)	855
BpuMI	CCSGG	3 cut(s)	569, 729, 730
BsaBI	GATNNNNATC	3 cut(s)	354, 723, 867
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	5 cut(s)	108, 164, 411, 728, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	5 cut(s)	279, 468, 625, 775, 850
Bse8I	GATNNNNATC	3 cut(s)	354, 723, 867
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	5 cut(s)	108, 164, 411, 728, 729
BseGI	GGATG	4 cut(s)	286, 544, 724, 868
BseJI	GATNNNNATC	3 cut(s)	354, 723, 867
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	2 cut(s)	602, 1086
BseNI	ACTGG	5 cut(s)	279, 468, 625, 775, 850
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	1009
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	677
BsiHKCI	CYCGRG	3 cut(s)	132, 165, 728
BsiSI	CCGG	2 cut(s)	569, 729
BslFI	GGGAC	4 cut(s)	182, 385, 856, 919
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	558, 782
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	4 cut(s)	182, 385, 856, 919
BsnI	GGCC	1 cut(s)	677
Bso31I	GGTCTC	1 cut(s)	558
BsoBI	CYCGRG	3 cut(s)	132, 165, 728
Bsp143I	GATC	4 cut(s)	214, 283, 355, 760
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	343, 794
BspANI	GGCC	1 cut(s)	677
BspCNI	CTCAG	2 cut(s)	601, 1087
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	4 cut(s)	170, 291, 363, 1007
BspMAI	CTGCAG	1 cut(s)	1000
BspOI	GCTAGC	1 cut(s)	1065
BspPI	GGATC	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	558
BsrBI	CCGCTC	1 cut(s)	345
BsrI	ACTGG	5 cut(s)	279, 468, 625, 775, 850
BssECI	CCNNGG	5 cut(s)	108, 164, 411, 728, 729
BssMI	GATC	4 cut(s)	214, 283, 355, 760
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	6 cut(s)	118, 343, 574, 622, 984, 1063
BstDEI	CTNAG	3 cut(s)	588, 945, 1095
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	4 cut(s)	286, 544, 724, 868
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	4 cut(s)	217, 286, 358, 763
BstMAI	GTCTC	2 cut(s)	558, 782
BstMBI	GATC	4 cut(s)	214, 283, 355, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	4 cut(s)	411, 567, 727, 728
BstSFI	CTRYAG	1 cut(s)	996
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	677
BtgI	CCRYGG	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	4 cut(s)	286, 544, 724, 868
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	558, 596
Cac8I	GCNNGC	6 cut(s)	118, 343, 574, 622, 984, 1063
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	169, 289, 1075
Cfr9I	CCCGGG	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	199, 474
CviAII	CATG	5 cut(s)	109, 173, 493, 746, 764
CviQI	GTAC	2 cut(s)	199, 474
DdeI	CTNAG	3 cut(s)	588, 945, 1095
DpnI	GATC	4 cut(s)	216, 285, 357, 762
DpnII	GATC	4 cut(s)	214, 283, 355, 760
DraIII	CACNNNGTG	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	3 cut(s)	169, 289, 1075
Eco88I	CYCGRG	3 cut(s)	132, 165, 728
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	782
FaeI	CATG	5 cut(s)	112, 176, 496, 749, 767
FaqI	GGGAC	4 cut(s)	182, 385, 856, 919
FatI	CATG	5 cut(s)	108, 172, 492, 745, 763
FauI	CCCGC	1 cut(s)	350
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	4 cut(s)	293, 551, 711, 855
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	5 cut(s)	375, 459, 506, 1014, 1062
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	1013
HaeIII	GGCC	1 cut(s)	677
HapII	CCGG	2 cut(s)	569, 729
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	5 cut(s)	112, 176, 496, 749, 767
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	2 cut(s)	6, 1046
HinfI	GANTC	4 cut(s)	103, 265, 685, 1036
HpaII	CCGG	2 cut(s)	569, 729
HphI	GGTGA	2 cut(s)	808, 893
Hpy188I	TCNGA	7 cut(s)	214, 349, 690, 703, 743, 873, 1105
Hpy188III	TCNNGA	8 cut(s)	49, 100, 132, 167, 287, 359, 506, 598
HpyAV	CCTTC	4 cut(s)	550, 661, 844, 1024
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	833
HpyCH4V	TGCA	5 cut(s)	120, 331, 576, 823, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	3 cut(s)	588, 945, 1095
HpySE526I	ACGT	1 cut(s)	833
Hsp92II	CATG	5 cut(s)	112, 176, 496, 749, 767
HspAI	GCGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	214, 283, 355, 760
LmnI	GCTCC	2 cut(s)	29, 941
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	3 cut(s)	129, 301, 877
MaeI	CTAG	5 cut(s)	375, 459, 506, 1014, 1062
MaeII	ACGT	1 cut(s)	833
MaeIII	GTNAC	3 cut(s)	627, 654, 829
MalI	GATC	4 cut(s)	216, 285, 357, 762
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	4 cut(s)	214, 283, 355, 760
MboII	GAAGA	2 cut(s)	311, 521
MluCI	AATT	7 cut(s)	76, 187, 454, 601, 816, 876, 930
MlyI	GAGTC	1 cut(s)	259
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	2 cut(s)	569, 729
MspR9I	CCNGG	4 cut(s)	413, 569, 729, 730
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	328
NciI	CCSGG	3 cut(s)	569, 729, 730
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	214, 283, 355, 760
NheI	GCTAGC	1 cut(s)	1061
NlaIII	CATG	5 cut(s)	112, 176, 496, 749, 767
NlaIV	GGNNCC	4 cut(s)	170, 291, 363, 1007
NmuCI	GTSAC	3 cut(s)	627, 654, 829
PfeI	GAWTC	3 cut(s)	103, 685, 1036
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	1009
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	4 cut(s)	170, 291, 363, 1007
PspPI	GGNCC	3 cut(s)	169, 289, 1075
PstI	CTGCAG	1 cut(s)	1000
RsaI	GTAC	2 cut(s)	200, 475
RsaNI	GTAC	2 cut(s)	199, 474
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	4 cut(s)	214, 283, 355, 760
Sau96I	GGNCC	3 cut(s)	169, 289, 1075
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	4 cut(s)	413, 569, 729, 730
SfaNI	GCATC	3 cut(s)	129, 301, 877
SfcI	CTRYAG	1 cut(s)	996
SinI	GGWCC	3 cut(s)	169, 289, 1075
SmaI	CCCGGG	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	7 cut(s)	76, 187, 454, 601, 816, 876, 930
SsiI	CCGC	2 cut(s)	343, 794
SspMI	CTAG	5 cut(s)	375, 459, 506, 1014, 1062
StyD4I	CCNGG	4 cut(s)	411, 567, 727, 728
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	836
TasI	AATT	7 cut(s)	76, 187, 454, 601, 816, 876, 930
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	3 cut(s)	103, 685, 1036
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	2 cut(s)	558, 596
TseFI	GTSAC	3 cut(s)	627, 654, 829
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	3 cut(s)	627, 654, 829
TspDTI	ATGAA	5 cut(s)	17, 181, 189, 481, 713
TspMI	CCCGGG	1 cut(s)	728
TspRI	CASTG	2 cut(s)	558, 596
VpaK11BI	GGWCC	3 cut(s)	169, 289, 1075
XapI	RAATTY	1 cut(s)	601
XbaI	TCTAGA	1 cut(s)	505
XmaI	CCCGGG	1 cut(s)	728
XspI	CTAG	5 cut(s)	375, 459, 506, 1014, 1062
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.