Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Forward (+)

57386101 .. 57387755

Gene Structure 1655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G033700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCCATGAAAGCTTTGCTCACACCTCGCTCCCTATATAATGCCTCCCTTTTCTTGTCAACCCCAAAACTCCTCCCACCCAAATTCTCTACTCACAACACCCTCTTGAATCCCATGGCTGCTTGCATCAACACTTGCCGAGCCAACACACCCACAAACCAGCCACTCCCTCGGGACCAAGAAACACAATACAATTTCATGATGTACTGTCGTGTTTCCGATCAAGTTTCCCACATACCCATTTGCCAGAACGGAACAAAAACCACGCAGACTCGCAGACTGGTGGATGATCTGGACCCAGAGGAAGAAAAGGGCGATGCTTTATGGCTCAAAATGCAAGACGAAGCCCGCTCGGATATTGATCAGGAACCCATTTTGTCTAGCTACTATTACACTTCCATTTTGTCTCACTCCTCCCTGGAAAGCGCGTTGGCTAATCATCTGTCTGTCAAGTTGAGCAATTCTAGTCTTTCCTGTAGTACCCTGGTGGATATTTTCATGGGGGTGTTTATAGAAGATGGAGAAGTCATTAGGGCTGTGAGGGATGATTTAAGAGCAGTGAAGGAGAGAGACCCAGCTTGCATTAGTTATACTCAGTGCTTCTTGAATTTCAAGGGCTTTTTAGCTTGCCAGGCACATAGGGTGGCACATAAGTTGTGGTCACAGGGCAGGAAGGTGTTGGCCTTGTTGATTCAGAACAGGGTTTCGGAGGTTTTCGCTGTGGATATTCATCCCGGGGCGAAAATCGGACATGGGTTGTTGCTGGATCATGCTACTGGTTTAGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCAATTTTACACAATGTGACATTGGGAGGGACTGGGAAGGTGTGTGGGGATAGGCATCCGAAAATTGGTGATGGGGTGCTTATAGGGGCAGGGACTTGTATTTTGGGGAACATTAGAATTGGGGAGGGAGCTAAGATTGGGGCTTGTTCTGTGGTGCTGAAAGATGTGCCAGCAAGAACTACTGCAGTTGGGAACCCAGCTAGGTTGATTGGAGGGAAGGAGAATCCAAAGAAGCTTGACAAGATGGCTAGCTTCACTATGGACCACACTTCCCACATAACTGAGTGGTCTGATTATGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

374

Amino Acids

40.87

Weight (kDa)

7.6

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	108 - 212	1.6e-36	Serine acetyltransferase, N-terminal
Hexapep	PF00132	292 - 326	2e-09	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	351
AccII	CGCG	1 cut(s)	428
AciI	CCGC	2 cut(s)	349, 800
AclWI	GGATC	1 cut(s)	774
AcsI	RAATTY	2 cut(s)	83, 607
AdeI	CACNNNGTG	1 cut(s)	835
AfaI	GTAC	2 cut(s)	206, 481
AfiI	CCNNNNNNNGG	1 cut(s)	884
AgsI	TTSAA	3 cut(s)	109, 607, 613
AjnI	CCWGG	3 cut(s)	417, 483, 630
AluBI	AGCT	8 cut(s)	14, 384, 578, 626, 950, 1019, 1054, 1071
AluI	AGCT	8 cut(s)	14, 384, 578, 626, 950, 1019, 1054, 1071
Alw26I	GTCTC	3 cut(s)	411, 564, 788
AlwI	GGATC	1 cut(s)	774
Ama87I	CYCGRG	2 cut(s)	171, 734
AoxI	GGCC	1 cut(s)	681
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	83, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	904, 936
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	175, 295, 1081
AsuC2I	CCSGG	2 cut(s)	735, 736
AsuHPI	GGTGA	2 cut(s)	814, 899
AsuNHI	GCTAGC	1 cut(s)	1067
AvaI	CYCGRG	2 cut(s)	171, 734
AvaII	GGWCC	3 cut(s)	175, 295, 1081
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	3 cut(s)	512, 884, 1057
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	3 cut(s)	419, 485, 632
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	2 cut(s)	735, 736
BcoDI	GTCTC	3 cut(s)	411, 564, 788
BfaI	CTAG	4 cut(s)	381, 465, 1020, 1068
BfmI	CTRYAG	2 cut(s)	475, 1002
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	5 cut(s)	419, 485, 632, 735, 736
Bme18I	GGWCC	3 cut(s)	175, 295, 1081
BmeT110I	CYCGRG	2 cut(s)	171, 734
BmgT120I	GGNCC	3 cut(s)	175, 295, 1081
BmiI	GGNNCC	4 cut(s)	176, 297, 369, 1013
BmrFI	CCNGG	5 cut(s)	419, 485, 632, 735, 736
BmrI	ACTGGG	1 cut(s)	861
BmsI	GCATC	3 cut(s)	135, 307, 883
BmtI	GCTAGC	1 cut(s)	1071
BmuI	ACTGGG	1 cut(s)	861
BpuMI	CCSGG	2 cut(s)	735, 736
BsaBI	GATNNNNATC	3 cut(s)	360, 729, 873
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	6 cut(s)	114, 170, 417, 483, 734, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse1I	ACTGG	3 cut(s)	285, 781, 856
Bse8I	GATNNNNATC	3 cut(s)	360, 729, 873
BseBI	CCWGG	3 cut(s)	419, 485, 632
BseDI	CCNNGG	6 cut(s)	114, 170, 417, 483, 734, 735
BseGI	GGATG	4 cut(s)	292, 550, 730, 874
BseJI	GATNNNNATC	3 cut(s)	360, 729, 873
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMII	CTCAG	2 cut(s)	608, 1092
BseNI	ACTGG	3 cut(s)	285, 781, 856
BseRI	GAGGAG	2 cut(s)	62, 403
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	2 cut(s)	574, 1015
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	683
BsiHKCI	CYCGRG	2 cut(s)	171, 734
BsiSI	CCGG	1 cut(s)	735
BslFI	GGGAC	3 cut(s)	188, 862, 925
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	3 cut(s)	411, 564, 788
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	3 cut(s)	188, 862, 925
BsnI	GGCC	1 cut(s)	683
Bso31I	GGTCTC	1 cut(s)	564
BsoBI	CYCGRG	2 cut(s)	171, 734
Bsp143I	GATC	4 cut(s)	220, 289, 361, 766
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	349, 800
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	2 cut(s)	607, 1093
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	176, 297, 369, 1013
BspMAI	CTGCAG	1 cut(s)	1006
BspOI	GCTAGC	1 cut(s)	1071
BspPI	GGATC	1 cut(s)	774
BspTNI	GGTCTC	1 cut(s)	564
BsrBI	CCGCTC	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	285, 781, 856
BssECI	CCNNGG	6 cut(s)	114, 170, 417, 483, 734, 735
BssMI	GATC	4 cut(s)	220, 289, 361, 766
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	419, 485, 632
Bst4CI	ACNGT	1 cut(s)	209
BstC8I	GCNNGC	6 cut(s)	124, 349, 580, 628, 990, 1069
BstDEI	CTNAG	3 cut(s)	594, 951, 1101
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	4 cut(s)	292, 550, 730, 874
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	223, 292, 364, 769
BstMAI	GTCTC	3 cut(s)	411, 564, 788
BstMBI	GATC	4 cut(s)	220, 289, 361, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 632
BstNI	CCWGG	3 cut(s)	419, 485, 632
BstSCI	CCNGG	5 cut(s)	417, 483, 630, 733, 734
BstSFI	CTRYAG	2 cut(s)	475, 1002
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	683
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	4 cut(s)	292, 550, 730, 874
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	564, 602
Cac8I	GCNNGC	6 cut(s)	124, 349, 580, 628, 990, 1069
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	175, 295, 1081
Cfr9I	CCCGGG	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	205, 480
CviAII	CATG	6 cut(s)	7, 115, 199, 499, 752, 770
CviQI	GTAC	2 cut(s)	205, 480
DdeI	CTNAG	3 cut(s)	594, 951, 1101
DpnI	GATC	4 cut(s)	222, 291, 363, 768
DpnII	GATC	4 cut(s)	220, 289, 361, 766
DraIII	CACNNNGTG	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	564
Eco47I	GGWCC	3 cut(s)	175, 295, 1081
Eco88I	CYCGRG	2 cut(s)	171, 734
EcoRII	CCWGG	3 cut(s)	417, 483, 630
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	6 cut(s)	10, 118, 202, 502, 755, 773
FaqI	GGGAC	3 cut(s)	188, 862, 925
FatI	CATG	6 cut(s)	6, 114, 198, 498, 751, 769
FauI	CCCGC	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	4 cut(s)	299, 557, 717, 861
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	4 cut(s)	381, 465, 1020, 1068
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	2 cut(s)	578, 1019
HaeIII	GGCC	1 cut(s)	683
HapII	CCGG	1 cut(s)	735
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	6 cut(s)	10, 118, 202, 502, 755, 773
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	12, 1052
HinfI	GANTC	4 cut(s)	109, 271, 691, 1042
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	2 cut(s)	814, 899
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	7 cut(s)	220, 355, 696, 709, 749, 879, 1111
Hpy188III	TCNNGA	6 cut(s)	106, 173, 199, 293, 365, 604
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	4 cut(s)	556, 667, 850, 1030
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	126, 337, 582, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 632
HpyF3I	CTNAG	3 cut(s)	594, 951, 1101
Hsp92II	CATG	6 cut(s)	10, 118, 202, 502, 755, 773
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	220, 289, 361, 766
LmnI	GCTCC	2 cut(s)	35, 947
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	3 cut(s)	135, 307, 883
MaeI	CTAG	4 cut(s)	381, 465, 1020, 1068
MaeIII	GTNAC	2 cut(s)	660, 835
MalI	GATC	4 cut(s)	222, 291, 363, 768
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	4 cut(s)	220, 289, 361, 766
MboII	GAAGA	2 cut(s)	317, 527
MluCI	AATT	7 cut(s)	83, 193, 460, 607, 822, 882, 936
MlyI	GAGTC	1 cut(s)	265
MseI	TTAA	1 cut(s)	551
MslI	CAYNNNNRTG	1 cut(s)	503
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	5 cut(s)	419, 485, 632, 735, 736
MvaI	CCWGG	3 cut(s)	419, 485, 632
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	334, 632
NciI	CCSGG	2 cut(s)	735, 736
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	4 cut(s)	220, 289, 361, 766
NheI	GCTAGC	1 cut(s)	1067
NlaIII	CATG	6 cut(s)	10, 118, 202, 502, 755, 773
NlaIV	GGNNCC	4 cut(s)	176, 297, 369, 1013
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	2 cut(s)	660, 835
PagI	TCATGA	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	109, 691, 1042
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	3 cut(s)	417, 483, 630
PspFI	CCCAGC	2 cut(s)	574, 1015
PspGI	CCWGG	3 cut(s)	417, 483, 630
PspN4I	GGNNCC	4 cut(s)	176, 297, 369, 1013
PspPI	GGNCC	3 cut(s)	175, 295, 1081
PstI	CTGCAG	1 cut(s)	1006
RsaI	GTAC	2 cut(s)	206, 481
RsaNI	GTAC	2 cut(s)	205, 480
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	220, 289, 361, 766
Sau96I	GGNCC	3 cut(s)	175, 295, 1081
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	5 cut(s)	419, 485, 632, 735, 736
SfaNI	GCATC	3 cut(s)	135, 307, 883
SfcI	CTRYAG	2 cut(s)	475, 1002
SinI	GGWCC	3 cut(s)	175, 295, 1081
SmaI	CCCGGG	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	7 cut(s)	83, 193, 460, 607, 822, 882, 936
SsiI	CCGC	2 cut(s)	349, 800
SspMI	CTAG	4 cut(s)	381, 465, 1020, 1068
StyD4I	CCNGG	5 cut(s)	417, 483, 630, 733, 734
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	209
TasI	AATT	7 cut(s)	83, 193, 460, 607, 822, 882, 936
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	109, 691, 1042
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	2 cut(s)	564, 602
TseFI	GTSAC	2 cut(s)	660, 835
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	660, 835
TspDTI	ATGAA	4 cut(s)	23, 187, 487, 719
TspGWI	ACGGA	1 cut(s)	267
TspMI	CCCGGG	1 cut(s)	734
TspRI	CASTG	2 cut(s)	564, 602
VpaK11BI	GGWCC	3 cut(s)	175, 295, 1081
XapI	RAATTY	2 cut(s)	83, 607
XmaI	CCCGGG	1 cut(s)	734
XspI	CTAG	4 cut(s)	381, 465, 1020, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.