Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Forward (+)

3279400 .. 3279732

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTACCTGCATCGATACTCAGACCAACCAACTTTCTCAGGATCCCAACATGTCCAGTTCTGACGAAGACCGTTACCAATTCATGAACTTCTGCCGCCGTAGCTTCTCCGATCAAGTTTTCTGCGCACTCATTTGCCAGAACCGCACGAAAACCACTCAGACGTGCAGAATCGTGGAGGATCTCGACCCAGATGAAGATCTATGGCTCATAATGCAGGACAAAGCTCGCTCAGATATTGATGATGAACCTATCTTGTCAAATTATTATCACTCGCTGACTCGAGAGGTACCCACTTGGTTTTTCCCATCAATTTGTTCGAAATCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

111

Amino Acids

12.89

Weight (kDa)

4.37

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AciI	CCGC	2 cut(s)	97, 145
AclWI	GGATC	3 cut(s)	38, 51, 189
AfaI	GTAC	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	51
AjiI	CACGTC	1 cut(s)	165
AluBI	AGCT	2 cut(s)	105, 227
AluI	AGCT	2 cut(s)	105, 227
AlwI	GGATC	3 cut(s)	38, 51, 189
Ama87I	CYCGRG	1 cut(s)	282
Asp718I	GGTACC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	75
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	45, 291
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	15
BseJI	GATNNNNATC	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	35, 53, 173, 246
BseNI	ACTGG	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	43, 112, 181, 199
BspACI	CCGC	2 cut(s)	97, 145
BspCNI	CTCAG	4 cut(s)	34, 52, 172, 245
BspDI	ATCGAT	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	45, 291
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	3 cut(s)	38, 51, 189
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	4 cut(s)	43, 112, 181, 199
Bst4CI	ACNGT	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	4 cut(s)	21, 39, 159, 232
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	4 cut(s)	46, 115, 184, 202
BstMBI	GATC	4 cut(s)	43, 112, 181, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 144, 214
BstNSI	RCATGY	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	3 cut(s)	43, 181, 199
BstYI	RGATCY	3 cut(s)	43, 181, 199
Bsu15I	ATCGAT	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	229
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	2 cut(s)	52, 85
CviJI	RGCY	4 cut(s)	5, 105, 208, 227
CviKI_1	RGCY	4 cut(s)	5, 105, 208, 227
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	4 cut(s)	21, 39, 159, 232
DpnI	GATC	4 cut(s)	45, 114, 183, 201
DpnII	GATC	4 cut(s)	43, 112, 181, 199
Eco88I	CYCGRG	1 cut(s)	282
FaeI	CATG	2 cut(s)	55, 88
FaiI	YATR	4 cut(s)	53, 86, 205, 212
FatI	CATG	2 cut(s)	51, 84
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
FspI	TGCGCA	1 cut(s)	127
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	55, 88
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	171, 280
Hpy188I	TCNGA	5 cut(s)	24, 64, 112, 162, 235
Hpy188III	TCNNGA	4 cut(s)	41, 85, 185, 284
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	12, 168, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 144, 214
HpyF3I	CTNAG	4 cut(s)	21, 39, 159, 232
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	55, 88
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	293
Kzo9I	GATC	4 cut(s)	43, 112, 181, 199
LpnPI	CCDG	6 cut(s)	22, 26, 70, 152, 203, 204
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	4 cut(s)	45, 114, 183, 201
MboI	GATC	4 cut(s)	43, 112, 181, 199
MboII	GAAGA	2 cut(s)	80, 209
MflI	RGATCY	3 cut(s)	43, 181, 199
MluCI	AATT	3 cut(s)	80, 262, 312
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	2 cut(s)	172, 280
MwoI	GCNNNNNNNGC	3 cut(s)	102, 144, 214
NdeII	GATC	4 cut(s)	43, 112, 181, 199
NlaIII	CATG	2 cut(s)	55, 88
NlaIV	GGNNCC	2 cut(s)	45, 291
NsbI	TGCGCA	1 cut(s)	127
NspI	RCATGY	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	282
PagI	TCATGA	1 cut(s)	84
PciI	ACATGT	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PscI	ACATGT	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	45, 291
PsuI	RGATCY	3 cut(s)	43, 181, 199
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	4 cut(s)	43, 112, 181, 199
SchI	GAGTC	1 cut(s)	274
SetI	ASST	6 cut(s)	11, 107, 167, 229, 253, 291
SfaNI	GCATC	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	80, 262, 312
SsiI	CCGC	2 cut(s)	97, 145
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	4 cut(s)	15, 186, 283, 320
TasI	AATT	3 cut(s)	80, 262, 312
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	171
TspDTI	ATGAA	4 cut(s)	73, 101, 210, 261
XceI	RCATGY	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.