Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Reverse (-)

15729168 .. 15731290

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAAAGGTCTGGCCGTAGCTCGAAGCCTATATAAGGCTTCCCCTTTTCTCTCTAACCAGAAACTTCTCTCACCCAACTCCTCTGTCCACACAAATTTTCAATTTCTTTCACCCATTTCCTCACTTCCCAAACAGCAAGCAATCTTGAATCCCATGGCTGCCTGTATTGACACTTCAAGAACTGGCTCACCCCAAAACAAGCCACTTTCTCGGGATCCAAACAGGTCCAAAACGGACGAAGATCCGTACCAGTTCATGAGATTCTGCCGTGGCAATTTCTCAGATCAAGTTTCTTGCCTACCCATTTGCCAGAATCGCACAAAAACCACACATACACGCAGAATCCTGGACGATCTTGAGCAAGATGAAGACAAGGGCGATGGGCTATGGCTGAAAATGCAAGATGAAGCTCGGGCAGATATTAATCAAGAACCCATGTTGTCAAATTTCATTTACGCTTCAATTTTGGCACATGCATCTCTAGAAAGTGCCTTAGCCAATCATCTGTCTGTCAAACTGAGCAATTCTAGTCTCTCTCTTGGTACTCTAGTTGATATTTTCATGGGGGTGCTCACAGAGGATCAAGAAGTCATCAAGGCCGTGAAGGATGATCTAAGGGCAGTGAAAGAGAGGGACCCAGCTTGCGTAAGCTATACTCACTGTTTCTTGAATTTCAAGGGTTTCCTTGCATGCCAATCGCATAGGATTGCACATAAATTGTGGTCACAGGGCAGGACGGTCTTGGCCTTGTTGATCCAGAACAGGGTATCTGAGGTTTTTGCTGTGGATATTCATCCCGGGGCGAAAATCGGACATGGGATTTTGCTCGATCACGCTACTGGAGTTGTTGTCGGCGAGACGGCGGTGATCGGAAACAATGTGTCAATTTTGCACAATGTGACCTTGGGAGGGACTGGAAAGGCCTCAGGGGACAGGCACCCAAAGATTGGTGATGGGGTGCTTATTGGGGCAGGGACTTGTATTTTGGGGAACATCAAAATTGGTGAAGGGGCAAAGATTGGGGCTTGTTCTGTGGTTCTAAAGGAAGTGCCTCCAAGGACTACTGCAGTTGGGAACCCAGCTAGGCTGCTTGGAGGGAAAGAAAATCCAATCAAGCACGACAAGATTCCTAGTTACACCATGGACCATACTTACAACATGTCTGAGTGGTCTGATTATGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

396

Amino Acids

43.03

Weight (kDa)

8.3

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	936
AccB7I	CCANNNNNTGG	1 cut(s)	947
AciI	CCGC	1 cut(s)	863
AclWI	GGATC	5 cut(s)	209, 222, 236, 588, 748
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	94, 445, 670
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	2 cut(s)	248, 544
AfiI	CCNNNNNNNGG	4 cut(s)	34, 763, 909, 947
AflIII	ACRYGT	1 cut(s)	1158
AgsI	TTSAA	6 cut(s)	101, 148, 177, 462, 670, 676
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	20, 410, 641, 651, 1082
AluI	AGCT	5 cut(s)	20, 410, 641, 651, 1082
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	536, 851
AlwI	GGATC	5 cut(s)	209, 222, 236, 588, 748
Ama87I	CYCGRG	3 cut(s)	210, 411, 797
AoxI	GGCC	4 cut(s)	12, 597, 744, 921
ApeKI	GCWGC	2 cut(s)	158, 1087
ApoI	RAATTY	3 cut(s)	94, 445, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	967, 999
AseI	ATTAAT	1 cut(s)	423
AspS9I	GGNCC	3 cut(s)	225, 634, 1144
AsuC2I	CCSGG	2 cut(s)	798, 799
AsuHPI	GGTGA	6 cut(s)	63, 102, 180, 877, 962, 1016
AvaI	CYCGRG	3 cut(s)	210, 411, 797
AvaII	GGWCC	3 cut(s)	225, 634, 1144
AxyI	CCTNAGG	1 cut(s)	925
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	936
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	145, 1074
BccI	CCATC	2 cut(s)	374, 947
BceAI	ACGGC	3 cut(s)	252, 584, 876
BcgI	CGANNNNNNTGC	2 cut(s)	678, 712
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	2 cut(s)	798, 799
BcoDI	GTCTC	2 cut(s)	536, 851
BfaI	CTAG	5 cut(s)	482, 528, 548, 1083, 1131
BfmI	CTRYAG	1 cut(s)	1065
BisI	GCNGC	2 cut(s)	159, 1088
BlsI	GCNGC	2 cut(s)	160, 1089
Bme1390I	CCNGG	3 cut(s)	347, 798, 799
Bme18I	GGWCC	3 cut(s)	225, 634, 1144
BmeT110I	CYCGRG	3 cut(s)	210, 411, 797
BmgT120I	GGNCC	3 cut(s)	225, 634, 1144
BmiI	GGNNCC	5 cut(s)	216, 635, 636, 938, 1076
BmrFI	CCNGG	3 cut(s)	347, 798, 799
BmsI	GCATC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	861
Bpu10I	CCTNAGC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	798, 799
BsaBI	GATNNNNATC	2 cut(s)	423, 792
BsaJI	CCNNGG	7 cut(s)	153, 268, 797, 798, 903, 1055, 1140
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 763, 909, 947
Bse1I	ACTGG	4 cut(s)	187, 250, 844, 919
Bse21I	CCTNAGG	1 cut(s)	925
Bse8I	GATNNNNATC	2 cut(s)	423, 792
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	7 cut(s)	153, 268, 797, 798, 903, 1055, 1140
BseGI	GGATG	2 cut(s)	613, 793
BseJI	GATNNNNATC	2 cut(s)	423, 792
BseLI	CCNNNNNNNGG	4 cut(s)	34, 763, 909, 947
BseMII	CTCAG	5 cut(s)	294, 509, 762, 939, 1155
BseNI	ACTGG	4 cut(s)	187, 250, 844, 919
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	145, 1074
BseYI	CCCAGC	2 cut(s)	637, 1078
BshFI	GGCC	4 cut(s)	14, 599, 746, 923
BshNI	GGYRCC	1 cut(s)	936
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	3 cut(s)	210, 411, 797
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	4 cut(s)	647, 925, 944, 988
BslI	CCNNNNNNNGG	4 cut(s)	34, 763, 909, 947
BsmAI	GTCTC	2 cut(s)	536, 851
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	4 cut(s)	647, 925, 944, 988
BsnI	GGCC	4 cut(s)	14, 599, 746, 923
BsoBI	CYCGRG	3 cut(s)	210, 411, 797
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
Bsp19I	CCATGG	2 cut(s)	153, 1140
BspACI	CCGC	1 cut(s)	863
BspANI	GGCC	4 cut(s)	14, 599, 746, 923
BspCNI	CTCAG	5 cut(s)	293, 510, 763, 938, 1156
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	216, 635, 636, 938, 1076
BspMAI	CTGCAG	1 cut(s)	1069
BspPI	GGATC	5 cut(s)	209, 222, 236, 588, 748
BspT107I	GGYRCC	1 cut(s)	936
BsrI	ACTGG	4 cut(s)	187, 250, 844, 919
BssECI	CCNNGG	7 cut(s)	153, 268, 797, 798, 903, 1055, 1140
BssMI	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
BssT1I	CCWWGG	4 cut(s)	153, 903, 1055, 1140
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	662, 739
BstC8I	GCNNGC	3 cut(s)	138, 643, 691
BstDEI	CTNAG	7 cut(s)	280, 493, 518, 614, 771, 925, 1164
BstDSI	CCRYGG	3 cut(s)	153, 268, 1140
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	613, 793
BstKTI	GATC	9 cut(s)	217, 244, 286, 355, 583, 613, 756, 832, 870
BstMAI	GTCTC	2 cut(s)	536, 851
BstMBI	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 397
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	3 cut(s)	476, 693, 1162
BstSCI	CCNGG	3 cut(s)	345, 796, 797
BstSFI	CTRYAG	1 cut(s)	1065
BstV1I	GCAGC	2 cut(s)	145, 1074
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	214, 241
BstYI	RGATCY	2 cut(s)	214, 241
Bsu36I	CCTNAGG	1 cut(s)	925
BsuRI	GGCC	4 cut(s)	14, 599, 746, 923
BtgI	CCRYGG	3 cut(s)	153, 268, 1140
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	613, 793
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	627, 658
Cac8I	GCNNGC	3 cut(s)	138, 643, 691
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	225, 634, 1144
Cfr9I	CCCGGG	1 cut(s)	797
Csp6I	GTAC	2 cut(s)	247, 543
CviAII	CATG	9 cut(s)	154, 256, 436, 473, 562, 690, 815, 1141, 1159
CviQI	GTAC	2 cut(s)	247, 543
DdeI	CTNAG	7 cut(s)	280, 493, 518, 614, 771, 925, 1164
DpnI	GATC	9 cut(s)	216, 243, 285, 354, 582, 612, 755, 831, 869
DpnII	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
DraIII	CACNNNGTG	1 cut(s)	898
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	4 cut(s)	153, 903, 1055, 1140
Eco147I	AGGCCT	1 cut(s)	923
Eco47I	GGWCC	3 cut(s)	225, 634, 1144
Eco81I	CCTNAGG	1 cut(s)	925
Eco88I	CYCGRG	3 cut(s)	210, 411, 797
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	4 cut(s)	153, 903, 1055, 1140
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	4 cut(s)	153, 903, 1055, 1140
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	9 cut(s)	157, 259, 439, 476, 565, 693, 818, 1144, 1162
FaqI	GGGAC	4 cut(s)	647, 925, 944, 988
FatI	CATG	9 cut(s)	153, 255, 435, 472, 561, 689, 814, 1140, 1158
Fnu4HI	GCNGC	2 cut(s)	159, 1088
FokI	GGATG	2 cut(s)	620, 780
Fsp4HI	GCNGC	2 cut(s)	159, 1088
FspBI	CTAG	5 cut(s)	482, 528, 548, 1083, 1131
GluI	GCNGC	2 cut(s)	159, 1088
GsaI	CCCAGC	2 cut(s)	641, 1082
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	4 cut(s)	14, 599, 746, 923
HapII	CCGG	1 cut(s)	798
Hin1II	CATG	9 cut(s)	157, 259, 439, 476, 565, 693, 818, 1144, 1162
HinfI	GANTC	5 cut(s)	148, 261, 313, 342, 1126
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	6 cut(s)	63, 102, 180, 877, 962, 1016
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	6 cut(s)	283, 772, 812, 872, 1165, 1174
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	598, 1001
HpyCH4III	ACNGT	2 cut(s)	662, 739
HpyCH4V	TGCA	6 cut(s)	400, 476, 689, 710, 892, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 397
HpyF3I	CTNAG	7 cut(s)	280, 493, 518, 614, 771, 925, 1164
Hsp92II	CATG	9 cut(s)	157, 259, 439, 476, 565, 693, 818, 1144, 1162
KflI	GGGWCCC	1 cut(s)	634
Kzo9I	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
Lsp1109I	GCAGC	2 cut(s)	145, 1074
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	5 cut(s)	482, 528, 548, 1083, 1131
MaeIII	GTNAC	3 cut(s)	723, 898, 1133
MalI	GATC	9 cut(s)	216, 243, 285, 354, 582, 612, 755, 831, 869
MboI	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
MboII	GAAGA	2 cut(s)	251, 380
MflI	RGATCY	2 cut(s)	214, 241
MhlI	GDGCHC	1 cut(s)	573
MnlI	CCTC	9 cut(s)	91, 130, 571, 624, 766, 902, 934, 1062, 1088
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	566
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	3 cut(s)	347, 798, 799
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	315, 397
NciI	CCSGG	2 cut(s)	798, 799
NcoI	CCATGG	2 cut(s)	153, 1140
NdeII	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
NlaIII	CATG	9 cut(s)	157, 259, 439, 476, 565, 693, 818, 1144, 1162
NlaIV	GGNNCC	5 cut(s)	216, 635, 636, 938, 1076
NmuCI	GTSAC	2 cut(s)	723, 898
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	3 cut(s)	476, 693, 1162
PaeI	GCATGC	1 cut(s)	693
PagI	TCATGA	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	923
PciI	ACATGT	1 cut(s)	1158
PfeI	GAWTC	5 cut(s)	148, 261, 313, 342, 1126
PflMI	CCANNNNNTGG	1 cut(s)	947
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	160, 1089
PpuMI	RGGWCCY	1 cut(s)	634
PscI	ACATGT	1 cut(s)	1158
PshBI	ATTAAT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	2 cut(s)	637, 1078
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	5 cut(s)	216, 635, 636, 938, 1076
PspPI	GGNCC	3 cut(s)	225, 634, 1144
PspPPI	RGGWCCY	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	1069
PsuI	RGATCY	2 cut(s)	214, 241
RsaI	GTAC	2 cut(s)	248, 544
RsaNI	GTAC	2 cut(s)	247, 543
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	159, 1088
Sau3AI	GATC	9 cut(s)	214, 241, 283, 352, 580, 610, 753, 829, 867
Sau96I	GGNCC	3 cut(s)	225, 634, 1144
ScrFI	CCNGG	3 cut(s)	347, 798, 799
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	9 cut(s)	10, 22, 227, 412, 643, 653, 777, 905, 1084
SfaNI	GCATC	1 cut(s)	485
SfcI	CTRYAG	1 cut(s)	1065
SinI	GGWCC	3 cut(s)	225, 634, 1144
SmaI	CCCGGG	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	693
SseBI	AGGCCT	1 cut(s)	923
SsiI	CCGC	1 cut(s)	863
SspMI	CTAG	5 cut(s)	482, 528, 548, 1083, 1131
StuI	AGGCCT	1 cut(s)	923
StyD4I	CCNGG	3 cut(s)	345, 796, 797
StyI	CCWWGG	4 cut(s)	153, 903, 1055, 1140
TaaI	ACNGT	2 cut(s)	662, 739
TaqI	TCGA	2 cut(s)	22, 828
TfiI	GAWTC	5 cut(s)	148, 261, 313, 342, 1126
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	627, 665
TseFI	GTSAC	2 cut(s)	723, 898
TseI	GCWGC	2 cut(s)	158, 1087
Tsp45I	GTSAC	2 cut(s)	723, 898
TspDTI	ATGAA	7 cut(s)	17, 244, 381, 420, 439, 550, 782
TspGWI	ACGGA	2 cut(s)	234, 248
TspMI	CCCGGG	1 cut(s)	797
TspRI	CASTG	2 cut(s)	627, 665
Van91I	CCANNNNNTGG	1 cut(s)	947
VpaK11BI	GGWCC	3 cut(s)	225, 634, 1144
VspI	ATTAAT	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	3 cut(s)	94, 445, 670
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	3 cut(s)	476, 693, 1162
XmaI	CCCGGG	1 cut(s)	797
XspI	CTAG	5 cut(s)	482, 528, 548, 1083, 1131
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.