Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8509939.1

Orthogroup ID

OG0012200

Physical Location & Seq

Genomic Coordinates Reverse (-)

2841 .. 3467

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8509939.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgggggtgtttctagaagatggagaagtcattagggctgtgagggatgatttaagagcagtgaaggagagagacccagcttgcattagttatactcagtgcttcttgaatttcaagggctttttggcttgccaggcacatagggtggcacataagttgtggtcacagggcaggaaggtgttggccttgttgattcagaacagggtttcggaggttttcgctgtggatattcatcccggggcgaaaattggacatgggttgttgctggatcatgctactggtttagtggtgggggagacggcggtgattgggaacaatgtgtcaattttgcataatgtgacattgggagggactgggaaggtgtgtggggataggcatccgaaaattggtgatggggtgcttataggggcagggacttgtattttggggaacattagaattggggagggagctaagattggggcttgttctgtggtgctgaaagatgtgccagcaagaactactgcagttgggaacccagctaggttgattggagggaaggagaatccaaagaagcttgacaagatggctagcttcactatggaccacacttcccacataactgagtggtctgattatgttatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

208

Amino Acids

22.21

Weight (kDa)

8.76

Isoelectric Point (pI)

20.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55920 AT3G13110
fragaria_vesca	FvH4_3g29510
malus_domestica	MD03G1187100.v1.1 MD11G1202100.v1.1
prunus_persica	Prupe.4G239400_v2.0.a1
pyrus_communis	pycom03g13940 pycom111g05080 pycom11g17480
rosa_chinensis	RchiOBHm_Chr5g0054471
rosa_laevigata	RLG00000034934
rosa_multiflora	Rmu_co8509939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026410
rosa_rugosa	Rorug05G0286500
rosa_samantha	Rh5AG356900 Rh5BG368700 Rh5CG391900 Rh5DG382700
rosa_wichuraiana	Rw5G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	109, 115
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	5 cut(s)	80, 452, 521, 556, 573
AluI	AGCT	5 cut(s)	80, 452, 521, 556, 573
Alw26I	GTCTC	2 cut(s)	66, 290
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	2 cut(s)	237, 238
AsuHPI	GGTGA	2 cut(s)	316, 401
AsuNHI	GCTAGC	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	583
BccI	CCATC	3 cut(s)	14, 386, 559
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	2 cut(s)	237, 238
BcoDI	GTCTC	2 cut(s)	66, 290
BfaI	CTAG	3 cut(s)	14, 522, 570
BfmI	CTRYAG	1 cut(s)	504
Bme1390I	CCNGG	3 cut(s)	134, 237, 238
Bme18I	GGWCC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	1 cut(s)	515
BmrFI	CCNGG	3 cut(s)	134, 237, 238
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	385
BmtI	GCTAGC	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	363
BpuMI	CCSGG	2 cut(s)	237, 238
BsaBI	GATNNNNATC	2 cut(s)	231, 375
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	236, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	283, 358
Bse8I	GATNNNNATC	2 cut(s)	231, 375
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	236, 237
BseGI	GGATG	3 cut(s)	52, 232, 376
BseJI	GATNNNNATC	2 cut(s)	231, 375
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	110, 594
BseNI	ACTGG	2 cut(s)	283, 358
BseYI	CCCAGC	2 cut(s)	76, 517
BshFI	GGCC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	364, 427
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	66, 290
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	364, 427
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	109, 595
BspLI	GGNNCC	1 cut(s)	515
BspMAI	CTGCAG	1 cut(s)	508
BspOI	GCTAGC	1 cut(s)	573
BspPI	GGATC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	283, 358
BssECI	CCNNGG	2 cut(s)	236, 237
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	82, 130, 492, 571
BstDEI	CTNAG	3 cut(s)	96, 453, 603
BstF5I	GGATG	3 cut(s)	52, 232, 376
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	66, 290
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	132, 235, 236
BstSFI	CTRYAG	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	52, 232, 376
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 104
Cac8I	GCNNGC	4 cut(s)	82, 130, 492, 571
Cfr13I	GGNCC	1 cut(s)	583
Cfr9I	CCCGGG	1 cut(s)	236
CviAII	CATG	2 cut(s)	254, 272
DdeI	CTNAG	3 cut(s)	96, 453, 603
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	2 cut(s)	257, 275
FaqI	GGGAC	2 cut(s)	364, 427
FatI	CATG	2 cut(s)	253, 271
FokI	GGATG	3 cut(s)	59, 219, 363
FspBI	CTAG	3 cut(s)	14, 522, 570
GsaI	CCCAGC	2 cut(s)	80, 521
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	2 cut(s)	257, 275
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	2 cut(s)	193, 544
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	316, 401
Hpy188I	TCNGA	4 cut(s)	198, 211, 381, 613
Hpy188III	TCNNGA	2 cut(s)	14, 106
HpyAV	CCTTC	4 cut(s)	58, 169, 352, 532
HpyCH4V	TGCA	3 cut(s)	84, 331, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	3 cut(s)	96, 453, 603
Hsp92II	CATG	2 cut(s)	257, 275
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	449
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	3 cut(s)	14, 522, 570
MaeIII	GTNAC	2 cut(s)	162, 337
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	29
MluCI	AATT	5 cut(s)	109, 246, 324, 384, 438
MnlI	CCTC	5 cut(s)	36, 205, 341, 439, 527
MseI	TTAA	1 cut(s)	53
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	3 cut(s)	134, 237, 238
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	2 cut(s)	237, 238
NdeII	GATC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	569
NlaIII	CATG	2 cut(s)	257, 275
NlaIV	GGNNCC	1 cut(s)	515
NmuCI	GTSAC	2 cut(s)	162, 337
PfeI	GAWTC	2 cut(s)	193, 544
Psp6I	CCWGG	1 cut(s)	132
PspFI	CCCAGC	2 cut(s)	76, 517
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	515
PspPI	GGNCC	1 cut(s)	583
PstI	CTGCAG	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	583
ScrFI	CCNGG	3 cut(s)	134, 237, 238
SetI	ASST	9 cut(s)	82, 180, 216, 363, 454, 523, 527, 558, 575
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	583
SmaI	CCCGGG	1 cut(s)	238
Sse9I	AATT	5 cut(s)	109, 246, 324, 384, 438
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	3 cut(s)	14, 522, 570
StyD4I	CCNGG	3 cut(s)	132, 235, 236
TasI	AATT	5 cut(s)	109, 246, 324, 384, 438
TfiI	GAWTC	2 cut(s)	193, 544
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	2 cut(s)	66, 104
TseFI	GTSAC	2 cut(s)	162, 337
Tsp45I	GTSAC	2 cut(s)	162, 337
TspDTI	ATGAA	1 cut(s)	221
TspMI	CCCGGG	1 cut(s)	236
TspRI	CASTG	2 cut(s)	66, 104
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	13
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	3 cut(s)	14, 522, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.