AT1G57600

Belongs to the membrane-bound acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004143
Physical Location & Seq
Reverse (-)
21330017 .. 21334790
4774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57600.1

Sequence Viewer

Length: 1602 bp
ATGAACACTCACAATAATCGATACGCAAAATGGAAACAGAGAGAGCTTGTTCTTATACTCCTATACGCCATCGCTTTCTATGCTTATGTCGTATGGAGATCGCTTCGTCTCTCCCACGATCATTACTTCAAGCTCCATGGTTTAGCTTCTGGCTGGCTCATTCCTAATCGACGTAATGATGTTTCTGATGCTCAATGGAGGAACTTTCGTGGAAATTTGCCAATTCTTAGCTTTGTTTTCGCTGTTTTCACTGTGATTGCAAATGGGGTTAGGTCGTTTTTCCATTTAAGAGCTAAAGGAATGGCTATCTTGTGGCTTTCAATGTCGTTAATATACTTGATATACTTACATGGAGCTTGCGTCATTTACATTCTCTCGATTGCAACAGCCAATTTCCTTCTTGTTAAGGTTTTTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGGCAACAGTTTGAATTCCTGGATAACTTTCGGGGCACATTTAGATGGCATATATGCTTCAACTTTGTTGTTTTGCGCATGTTAAGTTTTGGATATGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCAGGAGAAACACGTAATGCGCTGTTCCTTATGTAAGTTGGGGAAGACTTGCTACGTAGTGCGACAGGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGCTAGATATGCCACAGAATACTCTTTCATTCAAAGATGTTGCTTGGTATGGAGTGCGTTGGTTATTCAGCTTCTTGCTGATTGAACTCATGACACACTTATTTTATTACAATGCCTTCGTGATCAGTGGTCTGTGGAGAGAACTATCTCCTGTGGAAATATTTATTGTCGGATACGGAGTACTAAACTTTATGTGGCTTAAGTTCCTTCTTTTATGGAGATATTTCCGCTTTTGGTCTCTGGTGAATGGCATTGAAACTGTTGAGAACATGCCGAATTGCATTAACAATTGCTACAGCCTAGAACTATTCTGGAAAACCTGGCATGCCTCATTTAATAGGTGGCTTATCAGGTATATGTATATTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATGGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCTTCATGCCAGAAATGTTACTGAAATCAGCATCCAGTGCATATAAGGTTGAGAGTGCTTTTGGAGAATTCCTCCTTCGTGAACTCAAGGCGTTGTCTGGTGCCGTCACAATCACATGCCTCATGATTGCAAATCTTGCTGGCTATGTCATTGGACCATCTGGTATAAACTGGATGGTCTCCAGCTTTCTCAAAAGAGAAGGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGGGTACAAAGCTGATGTTCCACATCCAAGACTTAAGAAGTGTGGCGCATAGCCCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT

Protein Analysis

533

Amino Acids

62.79

Weight (kDa)

9.38

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT PF03062 227 - 448 1.5e-37 MBOAT, membrane-bound O-acyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 797
Acc16I TGCGCA 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 1400
AciI CCGC 3 cut(s) 785, 1048, 1518
AclWI GGATC 1 cut(s) 1204
AcsI RAATTY 4 cut(s) 214, 524, 1208, 1367
AfaI GTAC 5 cut(s) 779, 1002, 1506, 1538, 1546
AfiI CCNNNNNNNGG 3 cut(s) 510, 1193, 1514
AflII CTTAAG 2 cut(s) 1019, 1573
AflIII ACRYGT 2 cut(s) 652, 1292
AgsI TTSAA 8 cut(s) 130, 321, 454, 524, 571, 853, 905, 1076
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 2 cut(s) 528, 1139
AloI GAACNNNNNNTCC 2 cut(s) 1494, 1526
Alw26I GTCTC 3 cut(s) 113, 1062, 1483
AlwI GGATC 1 cut(s) 1204
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 1 cut(s) 732
ApoI RAATTY 4 cut(s) 214, 524, 1208, 1367
AspLEI GCGC 3 cut(s) 588, 663, 1588
AspS9I GGNCC 2 cut(s) 788, 1454
AsuHPI GGTGA 1 cut(s) 1075
AvaII GGWCC 1 cut(s) 1454
BaeGI GKGCMC 1 cut(s) 548
BaeI ACNNNNGTAYC 2 cut(s) 761, 794
BanI GGYRCC 1 cut(s) 1400
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
BbsI GAAGAC 1 cut(s) 692
BbvI GCAGC 1 cut(s) 719
BccI CCATC 4 cut(s) 77, 549, 1465, 1468
BceAI ACGGC 1 cut(s) 1388
BciT130I CCWGG 2 cut(s) 530, 1141
BciVI GTATCC 1 cut(s) 986
BclI TGATCA 2 cut(s) 640, 942
BcoDI GTCTC 3 cut(s) 113, 1062, 1483
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 5 cut(s) 423, 719, 824, 1121, 1190
BfmI CTRYAG 2 cut(s) 733, 1114
BfrI CTTAAG 2 cut(s) 1019, 1573
BfuI GTATCC 1 cut(s) 986
BisI GCNGC 2 cut(s) 733, 1519
BlsI GCNGC 2 cut(s) 734, 1520
BmcAI AGTACT 1 cut(s) 1002
Bme1390I CCNGG 2 cut(s) 530, 1141
Bme18I GGWCC 1 cut(s) 1454
BmgT120I GGNCC 2 cut(s) 788, 1454
BmiI GGNNCC 3 cut(s) 620, 789, 1402
BmrFI CCNGG 2 cut(s) 530, 1141
BmsI GCATC 2 cut(s) 178, 1340
BpiI GAAGAC 1 cut(s) 692
BplI GAGNNNNNCTC 2 cut(s) 1356, 1388
BpmI CTGGAG 2 cut(s) 637, 1465
BpuEI CTTGAG 1 cut(s) 1370
Bsa29I ATCGAT 1 cut(s) 19
BsaAI YACGTR 3 cut(s) 655, 697, 1540
BsaI GGTCTC 2 cut(s) 1062, 1483
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 1494, 1524
Bsc4I CCNNNNNNNGG 3 cut(s) 510, 1193, 1514
Bse1I ACTGG 4 cut(s) 620, 630, 1335, 1475
BseBI CCWGG 2 cut(s) 530, 1141
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 3 cut(s) 1331, 1479, 1563
BseLI CCNNNNNNNGG 3 cut(s) 510, 1193, 1514
BseMII CTCAG 1 cut(s) 833
BseNI ACTGG 4 cut(s) 620, 630, 1335, 1475
BseSI GKGCMC 1 cut(s) 548
BseXI GCAGC 1 cut(s) 719
BshFI GGCC 1 cut(s) 790
BshNI GGYRCC 1 cut(s) 1400
BshVI ATCGAT 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 510, 1193, 1514
BsmAI GTCTC 3 cut(s) 113, 1062, 1483
BsmBI CGTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 790
Bso31I GGTCTC 2 cut(s) 1062, 1483
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 5 cut(s) 98, 118, 640, 942, 1196
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 3 cut(s) 785, 1048, 1518
BspANI GGCC 1 cut(s) 790
BspCNI CTCAG 1 cut(s) 832
BspDI ATCGAT 1 cut(s) 19
BspHI TCATGA 2 cut(s) 909, 1422
BspLI GGNNCC 3 cut(s) 620, 789, 1402
BspMAI CTGCAG 1 cut(s) 737
BspPI GGATC 1 cut(s) 1204
BspT107I GGYRCC 1 cut(s) 1400
BspTI CTTAAG 2 cut(s) 1019, 1573
BspTNI GGTCTC 2 cut(s) 1062, 1483
BsrI ACTGG 4 cut(s) 620, 630, 1335, 1475
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 5 cut(s) 98, 118, 640, 942, 1196
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 530, 1141
Bst4CI ACNGT 3 cut(s) 253, 519, 1081
Bst6I CTCTTC 1 cut(s) 473
BstAFI CTTAAG 2 cut(s) 1019, 1573
BstAPI GCANNNNNTGC 2 cut(s) 1337, 1436
BstBAI YACGTR 3 cut(s) 655, 697, 1540
BstC8I GCNNGC 4 cut(s) 155, 358, 1146, 1441
BstDEI CTNAG 2 cut(s) 227, 819
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 3 cut(s) 1331, 1479, 1563
BstHHI GCGC 3 cut(s) 588, 663, 1588
BstKTI GATC 5 cut(s) 101, 121, 643, 945, 1199
BstMAI GTCTC 3 cut(s) 113, 1062, 1483
BstMBI GATC 5 cut(s) 98, 118, 640, 942, 1196
BstMWI GCNNNNNNNGC 4 cut(s) 80, 829, 1337, 1436
BstNI CCWGG 2 cut(s) 530, 1141
BstNSI RCATGY 6 cut(s) 442, 592, 1093, 1148, 1296, 1419
BstSCI CCNGG 2 cut(s) 528, 1139
BstSFI CTRYAG 2 cut(s) 733, 1114
BstSLI GKGCMC 1 cut(s) 548
BstSNI TACGTA 1 cut(s) 697
BstV1I GCAGC 1 cut(s) 719
BstV2I GAAGAC 1 cut(s) 692
Bsu15I ATCGAT 1 cut(s) 19
BsuI GTATCC 1 cut(s) 986
BsuRI GGCC 1 cut(s) 790
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 3 cut(s) 1331, 1479, 1563
BtsIMutI CAGTG 4 cut(s) 249, 613, 952, 1342
Cac8I GCNNGC 4 cut(s) 155, 358, 1146, 1441
CciI TCATGA 2 cut(s) 909, 1422
CfoI GCGC 3 cut(s) 588, 663, 1588
Cfr13I GGNCC 2 cut(s) 788, 1454
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 1 cut(s) 349
Csp6I GTAC 5 cut(s) 778, 1001, 1505, 1537, 1545
CviQI GTAC 5 cut(s) 778, 1001, 1505, 1537, 1545
DdeI CTNAG 2 cut(s) 227, 819
DpnI GATC 5 cut(s) 100, 120, 642, 944, 1198
DpnII GATC 5 cut(s) 98, 118, 640, 942, 1196
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
Eco105I TACGTA 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 136
Eco31I GGTCTC 2 cut(s) 1062, 1483
Eco47I GGWCC 1 cut(s) 1454
EcoRI GAATTC 2 cut(s) 524, 1367
EcoRII CCWGG 2 cut(s) 528, 1139
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 113
FauI CCCGC 1 cut(s) 778
FbaI TGATCA 2 cut(s) 640, 942
Fnu4HI GCNGC 2 cut(s) 733, 1519
FokI GGATG 3 cut(s) 1318, 1486, 1550
Fsp4HI GCNGC 2 cut(s) 733, 1519
FspBI CTAG 5 cut(s) 423, 719, 824, 1121, 1190
FspI TGCGCA 1 cut(s) 587
GlaI GCGC 3 cut(s) 587, 662, 1587
GluI GCNGC 2 cut(s) 733, 1519
GsuI CTGGAG 2 cut(s) 637, 1465
HaeIII GGCC 1 cut(s) 790
HgaI GACGC 1 cut(s) 349
HhaI GCGC 3 cut(s) 588, 663, 1588
Hin6I GCGC 3 cut(s) 586, 661, 1586
HinP1I GCGC 3 cut(s) 586, 661, 1586
HincII GTYRAC 1 cut(s) 1290
HindII GTYRAC 1 cut(s) 1290
HindIII AAGCTT 2 cut(s) 799, 1268
HinfI GANTC 1 cut(s) 629
HpaI GTTAAC 1 cut(s) 1290
HphI GGTGA 1 cut(s) 1075
Hpy166II GTNNAC 3 cut(s) 447, 1290, 1382
Hpy188I TCNGA 3 cut(s) 187, 992, 1215
Hpy188III TCNNGA 8 cut(s) 376, 644, 910, 940, 1132, 1200, 1379, 1423
Hpy8I GTNNAC 3 cut(s) 447, 1290, 1382
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 6 cut(s) 407, 482, 946, 1037, 1385, 1493
HpyCH4III ACNGT 3 cut(s) 253, 519, 1081
HpyCH4IV ACGT 4 cut(s) 172, 654, 696, 1539
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 829, 1337, 1436
HpyF3I CTNAG 2 cut(s) 227, 819
HpySE526I ACGT 4 cut(s) 172, 654, 696, 1539
HspAI GCGC 3 cut(s) 586, 661, 1586
Ksp22I TGATCA 2 cut(s) 640, 942
KspAI GTTAAC 1 cut(s) 1290
Kzo9I GATC 5 cut(s) 98, 118, 640, 942, 1196
LmnI GCTCC 3 cut(s) 138, 353, 618
Lsp1109I GCAGC 1 cut(s) 719
LweI GCATC 2 cut(s) 178, 1340
MaeI CTAG 5 cut(s) 423, 719, 824, 1121, 1190
MaeII ACGT 4 cut(s) 172, 654, 696, 1539
MaeIII GTNAC 3 cut(s) 425, 1317, 1405
MalI GATC 5 cut(s) 100, 120, 642, 944, 1198
MboI GATC 5 cut(s) 98, 118, 640, 942, 1196
MboII GAAGA 4 cut(s) 460, 697, 1215, 1294
MfeI CAATTG 1 cut(s) 1108
MhlI GDGCHC 1 cut(s) 548
MluCI AATT 9 cut(s) 214, 222, 391, 524, 792, 1096, 1108, 1208, 1367
MmeI TCCRAC 1 cut(s) 970
MnlI CCTC 6 cut(s) 192, 707, 1159, 1197, 1382, 1430
Mph1103I ATGCAT 1 cut(s) 811
MslI CAYNNNNRTG 2 cut(s) 553, 1282
MspCI CTTAAG 2 cut(s) 1019, 1573
MspR9I CCNGG 2 cut(s) 530, 1141
MunI CAATTG 1 cut(s) 1108
MvaI CCWGG 2 cut(s) 530, 1141
MwoI GCNNNNNNNGC 4 cut(s) 80, 829, 1337, 1436
NcoI CCATGG 1 cut(s) 136
NdeII GATC 5 cut(s) 98, 118, 640, 942, 1196
NlaIV GGNNCC 3 cut(s) 620, 789, 1402
NmuCI GTSAC 1 cut(s) 1405
NsbI TGCGCA 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 6 cut(s) 442, 592, 1093, 1148, 1296, 1419
PaeI GCATGC 1 cut(s) 1148
PagI TCATGA 2 cut(s) 909, 1422
PciI ACATGT 1 cut(s) 1292
PfeI GAWTC 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 528
PkrI GCNGC 2 cut(s) 734, 1520
Ppu21I YACGTR 3 cut(s) 655, 697, 1540
PscI ACATGT 1 cut(s) 1292
PsiI TTATAA 1 cut(s) 797
Psp6I CCWGG 2 cut(s) 528, 1139
PspGI CCWGG 2 cut(s) 528, 1139
PspN4I GGNNCC 3 cut(s) 620, 789, 1402
PspPI GGNCC 2 cut(s) 788, 1454
PstI CTGCAG 1 cut(s) 737
RsaI GTAC 5 cut(s) 779, 1002, 1506, 1538, 1546
RsaNI GTAC 5 cut(s) 778, 1001, 1505, 1537, 1545
RseI CAYNNNNRTG 2 cut(s) 553, 1282
SatI GCNGC 2 cut(s) 733, 1519
Sau3AI GATC 5 cut(s) 98, 118, 640, 942, 1196
Sau96I GGNCC 2 cut(s) 788, 1454
ScaI AGTACT 1 cut(s) 1002
ScrFI CCNGG 2 cut(s) 530, 1141
SduI GDGCHC 1 cut(s) 548
SfaNI GCATC 2 cut(s) 178, 1340
SfcI CTRYAG 2 cut(s) 733, 1114
SinI GGWCC 1 cut(s) 1454
SmiMI CAYNNNNRTG 2 cut(s) 553, 1282
SmlI CTYRAG 3 cut(s) 1019, 1385, 1573
SmoI CTYRAG 3 cut(s) 1019, 1385, 1573
SnaBI TACGTA 1 cut(s) 697
SpeI ACTAGT 1 cut(s) 422
SphI GCATGC 1 cut(s) 1148
Sse9I AATT 9 cut(s) 214, 222, 391, 524, 792, 1096, 1108, 1208, 1367
SsiI CCGC 3 cut(s) 785, 1048, 1518
SspI AATATT 1 cut(s) 981
SspMI CTAG 5 cut(s) 423, 719, 824, 1121, 1190
StyD4I CCNGG 2 cut(s) 528, 1139
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 3 cut(s) 253, 519, 1081
TaiI ACGT 4 cut(s) 175, 657, 699, 1542
TaqI TCGA 3 cut(s) 19, 169, 377
TasI AATT 9 cut(s) 214, 222, 391, 524, 792, 1096, 1108, 1208, 1367
TatI WGTACW 1 cut(s) 1000
TauI GCSGC 1 cut(s) 1521
TfiI GAWTC 1 cut(s) 629
TscAI CASTG 4 cut(s) 256, 620, 952, 1342
TseFI GTSAC 1 cut(s) 1405
TseI GCWGC 1 cut(s) 732
Tsp45I GTSAC 1 cut(s) 1405
TspDTI ATGAA 5 cut(s) 17, 501, 837, 1266, 1294
TspGWI ACGGA 2 cut(s) 433, 1011
TspRI CASTG 4 cut(s) 256, 620, 952, 1342
Vha464I CTTAAG 2 cut(s) 1019, 1573
VpaK11BI GGWCC 1 cut(s) 1454
XapI RAATTY 4 cut(s) 214, 524, 1208, 1367
XceI RCATGY 6 cut(s) 442, 592, 1093, 1148, 1296, 1419
XspI CTAG 5 cut(s) 423, 719, 824, 1121, 1190
ZrmI AGTACT 1 cut(s) 1002
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.