Rorug01G0105200

Belongs to the membrane-bound acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001018
Physical Location & Seq
Forward (+)
18825403 .. 18830234
4832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0105200.1

Sequence Viewer

Length: 558 bp
ATGGAAAAAAATCCAGAAGCACAAGAGACATTGGATGAGACTAGAGAAGCGTGCTGCAAAGGCGCATGCGAATCAAGTTCAAGAAAGCGTCTTGCTGATGACATAATTCCTCACATTCTCAATCTATATGGGTCTCGTGCAACACCTTCCGACTTTGAAATTTATGCTCCAAATGCTTCATTTGAGGACCCACTGATGCGTGCTCAAGGGTTGAAGCAGATCAAGTCAGCATTTTATTCACTATCCAAGGTTTTCAGTGAATCAAGAATTGTGGAATACAACATCCAAGAAAATATGCTTTCTCCCGAAAATCATGAGATATTGATCGATAACAAACAATACTACAAATTCTTCGGAAGAGACATAAATGTGACGTCACTCATCAAGTTGTATGCCTTGGAAGGAAAAATTGTTCGTCACGAAGATTGGTGGGACAAGAAGCCTCTTTTGAACAGAGAAACAGTTAAATTACCACTGATGGGCCGAATTATGGAACTGAGTCGTAGAGGTTCAATGCTGGCAACTCATGTTATGATGGGGTTTGGGAAGGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT

Protein Analysis

185

Amino Acids

21.34

Weight (kDa)

6.45

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 377
AcsI RAATTY 2 cut(s) 159, 347
AcyI GRCGYC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 479, 490
AgsI TTSAA 5 cut(s) 81, 158, 214, 451, 513
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 4 cut(s) 20, 32, 138, 354
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 2 cut(s) 159, 347
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 187, 481, 550
AvaII GGWCC 2 cut(s) 187, 550
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 41
BccI CCATC 2 cut(s) 472, 529
BcoDI GTCTC 4 cut(s) 20, 32, 138, 354
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme18I GGWCC 2 cut(s) 187, 550
BmgT120I GGNCC 3 cut(s) 187, 481, 550
BmiI GGNNCC 2 cut(s) 189, 552
BmsI GCATC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 246, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 490
Bse8I GATNNNNATC 1 cut(s) 323
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 246, 396
BseGI GGATG 2 cut(s) 40, 282
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 479, 490
BseMII CTCAG 1 cut(s) 488
BseXI GCAGC 1 cut(s) 41
BshFI GGCC 1 cut(s) 483
BshVI ATCGAT 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 205
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 479, 490
BsmAI GTCTC 4 cut(s) 20, 32, 138, 354
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 1 cut(s) 483
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 219, 324
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 489
BspDI ATCGAT 1 cut(s) 327
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 189, 552
BspTNI GGTCTC 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 246, 396
BssMI GATC 2 cut(s) 219, 324
BssNI GRCGYC 1 cut(s) 374
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 246, 396
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 4 cut(s) 52, 67, 201, 519
BstDEI CTNAG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 40, 282
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 222, 327
BstMAI GTCTC 4 cut(s) 20, 32, 138, 354
BstMBI GATC 2 cut(s) 219, 324
BstMWI GCNNNNNNNGC 2 cut(s) 60, 173
BstNSI RCATGY 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 1 cut(s) 483
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 2 cut(s) 40, 282
BtsIMutI CAGTG 3 cut(s) 191, 262, 473
Cac8I GCNNGC 4 cut(s) 52, 67, 201, 519
CciI TCATGA 1 cut(s) 313
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 187, 481, 550
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 3 cut(s) 66, 314, 527
CviJI RGCY 2 cut(s) 442, 483
CviKI_1 RGCY 2 cut(s) 442, 483
DdeI CTNAG 1 cut(s) 497
DpnI GATC 2 cut(s) 221, 326
DpnII GATC 2 cut(s) 219, 324
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 246, 396
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 187, 550
EcoO109I RGGNCCY 2 cut(s) 187, 550
EcoT14I CCWWGG 2 cut(s) 246, 396
ErhI CCWWGG 2 cut(s) 246, 396
FaeI CATG 3 cut(s) 69, 317, 530
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 65, 313, 526
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 47, 269
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 483
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 3 cut(s) 69, 317, 530
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 3 cut(s) 71, 260, 499
Hpy188I TCNGA 2 cut(s) 151, 356
Hpy188III TCNNGA 6 cut(s) 14, 81, 264, 305, 314, 419
HpyAV CCTTC 3 cut(s) 156, 395, 541
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 57, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 173
HpyF3I CTNAG 1 cut(s) 497
HpySE526I ACGT 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 3 cut(s) 69, 317, 530
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 219, 324
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 2 cut(s) 27, 503
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 3 cut(s) 370, 375, 416
MalI GATC 2 cut(s) 221, 326
MboI GATC 2 cut(s) 219, 324
MboII GAAGA 3 cut(s) 343, 369, 434
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 7 cut(s) 105, 159, 267, 347, 408, 467, 486
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 4 cut(s) 120, 178, 453, 500
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 60, 173
NdeII GATC 2 cut(s) 219, 324
NlaIII CATG 3 cut(s) 69, 317, 530
NlaIV GGNNCC 2 cut(s) 189, 552
NmuCI GTSAC 3 cut(s) 370, 375, 416
NspI RCATGY 1 cut(s) 69
PaeI GCATGC 1 cut(s) 69
PagI TCATGA 1 cut(s) 313
PfeI GAWTC 2 cut(s) 71, 260
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 507
PpuMI RGGWCCY 2 cut(s) 187, 550
Psp5II RGGWCCY 2 cut(s) 187, 550
PspN4I GGNNCC 2 cut(s) 189, 552
PspPI GGNCC 3 cut(s) 187, 481, 550
PspPPI RGGWCCY 2 cut(s) 187, 550
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 219, 324
Sau96I GGNCC 3 cut(s) 187, 481, 550
SchI GAGTC 1 cut(s) 508
SduI GDGCHC 1 cut(s) 205
SetI ASST 4 cut(s) 148, 252, 377, 511
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 2 cut(s) 187, 550
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SphI GCATGC 1 cut(s) 69
Sse9I AATT 7 cut(s) 105, 159, 267, 347, 408, 467, 486
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 2 cut(s) 246, 396
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 1 cut(s) 377
TaqI TCGA 1 cut(s) 327
TasI AATT 7 cut(s) 105, 159, 267, 347, 408, 467, 486
TfiI GAWTC 2 cut(s) 71, 260
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 3 cut(s) 198, 262, 480
TseFI GTSAC 3 cut(s) 370, 375, 416
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 3 cut(s) 370, 375, 416
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 3 cut(s) 198, 262, 480
VpaK11BI GGWCC 2 cut(s) 187, 550
XapI RAATTY 2 cut(s) 159, 347
XceI RCATGY 1 cut(s) 69
XspI CTAG 1 cut(s) 42
ZraI GACGTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.