Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Forward (+)

29200496 .. 29201920

Gene Structure 1425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G307200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATACATCACAGAATGCAACCGGTGGGAGTGGTGGAAATGGGGTTTTGGTCCCTCAAGCCAATGATACAGCTGGAGCAACAATGGTGGATGATCCAAAGCAAAACCTGAACGAGGTCATTAACTCTATTCAGAAAACTTTAGGGCTCATTCACCAGCTCTACCTCACTGTCTCTTCGTTCAACGACGCCTCTCAGCTCCCCCTCCTCCAACGCCTAAATGCTCTTGTTATCGAGCTTGACAACATGGCTAAGCTGTCCGAAAAATGCAATATCCAGGTTCCTATGGAAGTTTTTAATTTGATTGACGATGGGAAGAATCCTGATGAATTTACAAGGGATGTCATAAACAGTTGCATTGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTACGCAAACATCTTCTGGAAGAACTTGAACAGACATTTCCTGATGAAGTTGAATCTTACAGAGAAATACGTGCTGCATCTGCTGCTGAAACAAAACGGCTTGCACAAGCACAGAGCATATTACAGAATGGTGATGTGAAAGTCAAACCCGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

188

Amino Acids

20.54

Weight (kDa)

4.89

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	184, 400, 434, 458
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	5 cut(s)	74, 160, 199, 238, 256
AluI	AGCT	5 cut(s)	74, 160, 199, 238, 256
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	479, 488
ApoI	RAATTY	1 cut(s)	329
AsiGI	ACCGGT	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	146, 548
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	466, 475
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	480, 489
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	2 cut(s)	481, 490
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	54, 282
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	2 cut(s)	97, 346
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	466, 475
BshTI	ACCGGT	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	94, 372
Bsp1720I	GCTNAGC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	54, 282
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	2 cut(s)	94, 372
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	172, 353
Bst6I	CTCTTC	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	195, 252
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	97, 346
BstKTI	GATC	2 cut(s)	97, 375
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	94, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 488
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	466, 475
BtsCI	GGATG	2 cut(s)	97, 346
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	195, 252
DpnI	GATC	2 cut(s)	96, 374
DpnII	GATC	2 cut(s)	94, 372
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	554
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	250
FaiI	YATR	4 cut(s)	248, 287, 347, 524
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	480, 489
FokI	GGATG	2 cut(s)	104, 353
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	480, 489
GluI	GCNGC	2 cut(s)	480, 489
GsuI	CTGGAG	1 cut(s)	96
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	250
HinfI	GANTC	2 cut(s)	319, 458
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	146, 548
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	3 cut(s)	135, 262, 372
Hpy188III	TCNNGA	4 cut(s)	323, 400, 422, 446
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	172, 353
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	5 cut(s)	20, 270, 357, 482, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 488
HpyF3I	CTNAG	2 cut(s)	195, 252
HpySE526I	ACGT	1 cut(s)	475
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	94, 372
LmnI	GCTCC	2 cut(s)	77, 204
LpnPI	CCDG	9 cut(s)	37, 60, 122, 170, 263, 290, 336, 407, 459
Lsp1109I	GCAGC	2 cut(s)	466, 475
LweI	GCATC	1 cut(s)	491
MaeII	ACGT	1 cut(s)	475
MalI	GATC	2 cut(s)	96, 374
MboI	GATC	2 cut(s)	94, 372
MboII	GAAGA	4 cut(s)	168, 328, 410, 437
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	298, 329
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	66, 109, 176, 202, 215, 218
MseI	TTAA	3 cut(s)	123, 297, 562
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	485, 488
NdeII	GATC	2 cut(s)	94, 372
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	54, 282
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	319, 458
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	481, 490
Ppu21I	YACGTR	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	54, 282
PspPI	GGNCC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	123, 297, 562
SatI	GCNGC	2 cut(s)	480, 489
Sau3AI	GATC	2 cut(s)	94, 372
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	491
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	298, 329
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	172, 353
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	298, 329
TfiI	GAWTC	2 cut(s)	319, 458
Tru1I	TTAA	3 cut(s)	123, 297, 562
Tru9I	TTAA	3 cut(s)	123, 297, 562
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	479, 488
TspDTI	ATGAA	2 cut(s)	342, 465
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.