Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001018

Physical Location & Seq

Genomic Coordinates Reverse (-)

34814389 .. 34815617

Gene Structure 1229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATGCATCGATGAATGCAAATGCTGGGATTGGTGGGAGTGGTGGCAATGGGATATTGGTCCCTCAAACCAATGATACAGCAGGAACAACAGGGGTGGATGATCCAAAGCAAGACCTGAAACAGGTCATTAACTCTATTCAGAAGACCTTAGGGCTAATTCACCAGCTCTACCTCACTGTCTCTTCATTCAATGCCAGCTCTCAGCTCCCCCTTCTCCAGCGCCTAAATGCTCTTGTTATGGAGCTTGACAATATGGCTAAGTTGTCTGACAAATGCAATATCCAGGTTCCTATGGAGGTTTTTAATTTGATTGACGATGGAAAGAATCCTGATGAATTTACAAGGGATGTCATAAACAGCTGTATTGCCAAAAATCAGATCATTAAAGGCAAAACTGATACCTTCAAGAGTTTGCGCAAACATCTTCTCGACGAACTTGAACAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGCTGCTTCAGCTGCTGCTGTAAACTCTTCTCATTTGATACAGGAAACGAAACGGCTTGCACAAGCACAAAGCGCACTGCCAAATGGAGATGTGAAGGTCAAACTCGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0016591 GO:0016592 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0055029 GO:0061695 GO:0070013 GO:0070847 GO:0090575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med10

Protein Analysis

200

Amino Acids

21.67

Weight (kDa)

5.21

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med10	PF09748	46 - 159	1.4e-34	Transcription factor subunit Med10 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26665 AT1G26665 AT5G41910 AT5G41910 AT5G41910
fragaria_vesca	FvH4_4g11450 FvH4_4g11450 FvH4_4g11450 FvH4_5g19692
malus_domestica	MD06G1119500.v1.1 MD14G1136300.v1.1
prunus_persica	Prupe.2G307200_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1 Prupe.5G130000_v2.0.a1
pyrus_communis	pycom06g11060 pycom14g11180
rosa_chinensis	RchiOBHm_Chr1g0332661 RchiOBHm_Chr2g0098501 RchiOBHm_Chr2g0150181 RchiOBHm_Chr4g0445211 RchiOBHm_Chr5g0055281 RchiOBHm_Chr6g0273561 RchiOBHm_Chr7g0187021
rosa_laevigata	RLG00000004802 RLG00000008677 RLG00000013244 RLG00000014162 RLG00000025254 RLG00000027890 RLG00000028830 RLG00000029648
rosa_multiflora	Rmu_sc0001758.1_g000044 Rmu_sc0004208.1_g000016 Rmu_sc0004413.1_g000043 Rmu_sc0004556.1_g000013 Rmu_sc0021893.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123680 Rroxscaffold_3G00246910 Rroxscaffold_4G00318070 Rroxscaffold_5G00352610 Rroxscaffold_7G00174890 Rroxscaffold_7G00176820
rosa_rugosa	Rorug01G0105200 Rorug04G0104200.1 Rorug06G0478600 Rorug06G0478600
rosa_samantha	Rh1AG127200 Rh1BG096800 Rh1CG121100 Rh1DG132300 Rh3AG205400 Rh4BG130700 Rh4CG154700 Rh6CG194000 Rh6DG185900 Rh7AG084100 Rh7BG078800 Rh7CG085200 Rh7DG086100
rosa_wichuraiana	Rw1G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	193, 409, 443, 467
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	6 cut(s)	169, 201, 208, 247, 363, 497
AluI	AGCT	6 cut(s)	169, 201, 208, 247, 363, 497
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	590
ApeKI	GCWGC	3 cut(s)	488, 497, 500
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	3 cut(s)	225, 420, 560
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	475, 484, 487
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	3 cut(s)	489, 498, 501
BlsI	GCNGC	3 cut(s)	490, 499, 502
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	63, 291
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse21I	CCTNAGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	11
BseGI	GGATG	3 cut(s)	10, 106, 355
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	475, 484, 487
BseYI	CCCAGC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	590
Bsp143I	GATC	2 cut(s)	103, 381
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	63, 291
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	55
BssMI	GATC	2 cut(s)	103, 381
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	190, 517
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	199, 543
BstDEI	CTNAG	3 cut(s)	151, 204, 261
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	10, 106, 355
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	3 cut(s)	225, 420, 560
BstKTI	GATC	2 cut(s)	106, 384
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	103, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 497, 557
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	3 cut(s)	475, 484, 487
BstV2I	GAAGAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	151
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	10, 106, 355
BtsI	GCAGTG	1 cut(s)	560
BtsIMutI	CAGTG	2 cut(s)	177, 560
Cac8I	GCNNGC	2 cut(s)	199, 543
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	3 cut(s)	225, 420, 560
Cfr13I	GGNCC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviJI	RGCY	9 cut(s)	157, 169, 201, 208, 247, 260, 363, 497, 541
CviKI_1	RGCY	9 cut(s)	157, 169, 201, 208, 247, 260, 363, 497, 541
DdeI	CTNAG	3 cut(s)	151, 204, 261
DpnI	GATC	2 cut(s)	105, 383
DpnII	GATC	2 cut(s)	103, 381
Eam1104I	CTCTTC	2 cut(s)	190, 517
EarI	CTCTTC	2 cut(s)	190, 517
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	10
FaiI	YATR	6 cut(s)	242, 257, 296, 356, 472, 474
FaqI	GGGAC	1 cut(s)	47
Fnu4HI	GCNGC	3 cut(s)	489, 498, 501
FokI	GGATG	3 cut(s)	17, 113, 362
Fsp4HI	GCNGC	3 cut(s)	489, 498, 501
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	3 cut(s)	224, 419, 559
GluI	GCNGC	3 cut(s)	489, 498, 501
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	226
HhaI	GCGC	3 cut(s)	225, 420, 560
Hin6I	GCGC	3 cut(s)	223, 418, 558
HinP1I	GCGC	3 cut(s)	223, 418, 558
HinfI	GANTC	2 cut(s)	328, 467
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	144, 271, 381
Hpy188III	TCNNGA	4 cut(s)	332, 409, 431, 455
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	3 cut(s)	224, 415, 574
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	8, 20, 279, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 497, 557
HpyF3I	CTNAG	3 cut(s)	151, 204, 261
HpySE526I	ACGT	1 cut(s)	484
HspAI	GCGC	3 cut(s)	223, 418, 558
Kzo9I	GATC	2 cut(s)	103, 381
LmnI	GCTCC	2 cut(s)	213, 244
Lsp1109I	GCAGC	3 cut(s)	475, 484, 487
LweI	GCATC	1 cut(s)	17
MaeII	ACGT	1 cut(s)	484
MalI	GATC	2 cut(s)	105, 383
MboI	GATC	2 cut(s)	103, 381
MboII	GAAGA	4 cut(s)	157, 177, 419, 504
MluCI	AATT	3 cut(s)	159, 307, 338
MnlI	CCTC	3 cut(s)	75, 185, 292
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	4 cut(s)	132, 306, 387, 598
MspA1I	CMGCKG	2 cut(s)	363, 497
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	494, 497, 557
NdeII	GATC	2 cut(s)	103, 381
NlaIV	GGNNCC	2 cut(s)	63, 291
NsbI	TGCGCA	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	590
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	328, 467
PkrI	GCNGC	3 cut(s)	490, 499, 502
Ppu21I	YACGTR	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	63, 291
PspPI	GGNCC	1 cut(s)	61
PspXI	VCTCGAGB	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	500
PvuII	CAGCTG	2 cut(s)	363, 497
SaqAI	TTAA	4 cut(s)	132, 306, 387, 598
SatI	GCNGC	3 cut(s)	489, 498, 501
Sau3AI	GATC	2 cut(s)	103, 381
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	287
SfaNI	GCATC	1 cut(s)	17
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	3 cut(s)	159, 307, 338
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	3 cut(s)	11, 432, 591
TasI	AATT	3 cut(s)	159, 307, 338
TfiI	GAWTC	2 cut(s)	328, 467
Tru1I	TTAA	4 cut(s)	132, 306, 387, 598
Tru9I	TTAA	4 cut(s)	132, 306, 387, 598
TscAI	CASTG	2 cut(s)	184, 567
TseI	GCWGC	3 cut(s)	488, 497, 500
TspDTI	ATGAA	4 cut(s)	29, 177, 351, 474
TspRI	CASTG	2 cut(s)	184, 567
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	590
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.