RchiOBHm_Chr4g0445211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001018
Physical Location & Seq
Reverse (-)
65731241 .. 65732298
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41281

Sequence Viewer

Length: 258 bp
ATGCTAGAGGTCAGCGGGCGAAAGGCTGTGGACAAGAAGTCCCGGCTAGTCTCTGGGCCGAAGACTGCGCCTAGGGAAGGGACTGGGTTGAAGGCAAGAACTGGGCCTTTTTGGCTTAAAGCTGAAAATGGGGGCTATATGTTGCAGACCCTCAAGAATAGCTGGAGGAGCAACCTGATGTTAGGGTTGTTGGCTATTGAGAAGGTTGCAGATGGTGCTGGTTCTGACCCTACGAGGAAGGGACTCGCGCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.08

Weight (kDa)

10.34

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 91
AhdI GACNNNNNGTC 1 cut(s) 37
AluBI AGCT 2 cut(s) 122, 162
AluI AGCT 2 cut(s) 122, 162
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 2 cut(s) 56, 104
AspA2I CCTAGG 1 cut(s) 71
AspLEI GCGC 2 cut(s) 70, 250
AspS9I GGNCC 2 cut(s) 56, 104
AsuC2I CCSGG 1 cut(s) 43
AvrII CCTAGG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 68
BccI CCATC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 3 cut(s) 5, 47, 72
BglI GCCNNNNNGGC 1 cut(s) 112
BlnI CCTAGG 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 43
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 56, 104
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 2 cut(s) 93, 111
BmuI ACTGGG 2 cut(s) 93, 111
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 88, 106
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 88, 106
BseRI GAGGAG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 58, 106
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 25, 94
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 25, 94
BsnI GGCC 2 cut(s) 58, 106
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 58, 106
BspFNI CGCG 1 cut(s) 248
BsrI ACTGG 2 cut(s) 88, 106
BssECI CCNNGG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 70, 250
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 112, 168, 215
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 68
BsuRI GGCC 2 cut(s) 58, 106
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 2 cut(s) 70, 250
Cfr13I GGNCC 2 cut(s) 56, 104
CviJI RGCY 9 cut(s) 26, 46, 58, 106, 115, 122, 135, 162, 194
CviKI_1 RGCY 9 cut(s) 26, 46, 58, 106, 115, 122, 135, 162, 194
DriI GACNNNNNGTC 1 cut(s) 37
Eam1105I GACNNNNNGTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaiI YATR 2 cut(s) 138, 140
FaqI GGGAC 2 cut(s) 25, 94
FauI CCCGC 1 cut(s) 8
FspBI CTAG 3 cut(s) 5, 47, 72
GlaI GCGC 2 cut(s) 69, 249
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 2 cut(s) 58, 106
HapII CCGG 1 cut(s) 43
HhaI GCGC 2 cut(s) 70, 250
Hin6I GCGC 2 cut(s) 68, 248
HinP1I GCGC 2 cut(s) 68, 248
HinfI GANTC 1 cut(s) 243
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 4 cut(s) 71, 85, 196, 232
HpyCH4V TGCA 2 cut(s) 145, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 168, 215
HspAI GCGC 2 cut(s) 68, 248
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 7 cut(s) 39, 56, 69, 87, 148, 188, 204
MaeI CTAG 3 cut(s) 5, 47, 72
MboII GAAGA 1 cut(s) 73
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 3 cut(s) 159, 161, 228
MseI TTAA 2 cut(s) 117, 256
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 112, 168, 215
NciI CCSGG 1 cut(s) 43
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 56, 104
SaqAI TTAA 2 cut(s) 117, 256
Sau96I GGNCC 2 cut(s) 56, 104
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 43
SetI ASST 5 cut(s) 12, 124, 164, 177, 207
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SsiI CCGC 1 cut(s) 15
SspMI CTAG 3 cut(s) 5, 47, 72
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 71
Tru1I TTAA 2 cut(s) 117, 256
Tru9I TTAA 2 cut(s) 117, 256
XagI CCTNNNNNAGG 1 cut(s) 75
XmaJI CCTAGG 1 cut(s) 71
XspI CTAG 3 cut(s) 5, 47, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.